Literature DB >> 21583275

1-Hydr-oxy-2-meth-oxy-6-methyl-9,10-anthraquinone from Rennellia elliptica Korth.

Nor Hadiani Ismail, Che Puteh Osman, Rohaya Ahmad, Khalijah Awang, Seik Weng Ng.   

Abstract

The title compound, C(16)H(12)O(4), exists as planar molecules in the solid state (r.m.s. deviation of 0.02 Å in one mol-ecule and 0.07 Å in the second independent mol-ecule comprising the asymmetric unit). In each mol-ecule, the 1-hydr-oxy group forms an intra-molecular hydrogen bond to the adjacent carbonyl O atom.

Entities:  

Year:  2009        PMID: 21583275      PMCID: PMC2969574          DOI: 10.1107/S1600536809017619

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The existence of the title natural product has only been reported for Crucianella maritima L. (El-Lakany et al., 2004 ▶). For another anthraquinone isolated from Rennellia elliptica Korth., see: Ismail et al. (2009 ▶).

Experimental

Crystal data

C16H12O4 M = 268.26 Triclinic, a = 7.1755 (3) Å b = 11.9082 (5) Å c = 14.9683 (7) Å α = 91.409 (3)° β = 100.603 (3)° γ = 105.666 (3)° V = 1206.73 (9) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.25 × 0.20 × 0.01 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 6750 measured reflections 4142 independent reflections 2248 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.082 wR(F 2) = 0.267 S = 1.08 4142 reflections 367 parameters H-atom parameters constrained Δρmax = 0.59 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809017619/tk2448sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017619/tk2448Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12O4Z = 4
Mr = 268.26F(000) = 560
Triclinic, P1Dx = 1.477 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1755 (3) ÅCell parameters from 1159 reflections
b = 11.9082 (5) Åθ = 2.8–26.8°
c = 14.9683 (7) ŵ = 0.11 mm1
α = 91.409 (3)°T = 100 K
β = 100.603 (3)°Plate, yellow
γ = 105.666 (3)°0.25 × 0.20 × 0.01 mm
V = 1206.73 (9) Å3
Bruker SMART APEX diffractometer2248 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.051
graphiteθmax = 25.0°, θmin = 1.8°
ω scansh = −8→8
6750 measured reflectionsk = −14→13
4142 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.082Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.267H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.1397P)2 + 0.3435P] where P = (Fo2 + 2Fc2)/3
4142 reflections(Δ/σ)max = 0.001
367 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.35 e Å3
xyzUiso*/Ueq
O10.2331 (5)0.2601 (3)0.5314 (2)0.0207 (8)
O20.2924 (5)0.7172 (3)0.4917 (2)0.0219 (9)
O30.3202 (5)0.6932 (3)0.3261 (2)0.0205 (8)
H30.30840.72720.37370.031*
O40.3344 (5)0.5601 (3)0.1875 (2)0.0207 (8)
O50.9299 (6)1.2275 (3)1.0962 (2)0.0327 (10)
O60.5739 (6)0.7665 (3)1.0100 (2)0.0281 (9)
O70.5636 (6)0.7944 (3)0.8409 (2)0.0297 (10)
H70.53650.75870.88660.045*
O80.6524 (5)0.9285 (3)0.7122 (2)0.0279 (9)
C10.1303 (8)0.4169 (5)0.8389 (3)0.0247 (13)
H1A0.20630.36080.85550.037*
H1B−0.01100.37730.83160.037*
H1C0.16820.48060.88720.037*
C20.1725 (7)0.4662 (4)0.7505 (3)0.0188 (11)
C30.1867 (7)0.3958 (4)0.6786 (3)0.0186 (11)
H3A0.17460.31530.68580.022*
C40.2183 (7)0.4406 (4)0.5959 (3)0.0163 (11)
C50.2389 (7)0.3634 (4)0.5212 (3)0.0158 (11)
C60.2613 (7)0.4126 (4)0.4328 (3)0.0155 (11)
C70.2703 (7)0.3443 (4)0.3595 (3)0.0146 (11)
H7A0.26150.26400.36620.017*
C80.2921 (7)0.3884 (4)0.2752 (3)0.0187 (12)
H80.29510.33850.22530.022*
C90.3092 (7)0.5067 (4)0.2654 (3)0.0179 (11)
C100.3034 (7)0.5792 (4)0.3390 (3)0.0160 (11)
C110.2798 (7)0.5340 (4)0.4234 (3)0.0153 (11)
C120.2727 (7)0.6111 (4)0.4991 (3)0.0176 (11)
C130.2400 (7)0.5601 (4)0.5865 (3)0.0143 (11)
C140.2299 (7)0.6314 (4)0.6590 (3)0.0184 (11)
H140.24620.71250.65270.022*
C150.1964 (7)0.5858 (4)0.7401 (3)0.0195 (12)
H150.18940.63550.78930.023*
C160.3257 (8)0.4888 (5)0.1080 (4)0.0295 (14)
H16A0.33290.53670.05580.044*
H16B0.20140.42610.09590.044*
H16C0.43700.45460.11790.044*
C170.8428 (9)1.0596 (5)1.4057 (3)0.0262 (13)
H17A0.97191.11821.41930.039*
H17B0.84500.99501.44490.039*
H17C0.74091.09571.41710.039*
C180.7980 (7)1.0137 (5)1.3075 (3)0.0204 (12)
C190.8440 (7)1.0856 (5)1.2383 (3)0.0204 (12)
H190.90841.16641.25370.024*
C200.7990 (7)1.0432 (4)1.1479 (3)0.0167 (11)
C210.8479 (8)1.1216 (5)1.0761 (3)0.0221 (12)
C220.7990 (7)1.0732 (4)0.9807 (3)0.0206 (12)
C230.8403 (8)1.1438 (5)0.9115 (3)0.0230 (12)
H230.90191.22510.92590.028*
C240.7944 (8)1.0992 (5)0.8208 (3)0.0236 (12)
H240.82611.15000.77450.028*
C250.7032 (8)0.9821 (5)0.7979 (3)0.0236 (13)
C260.6581 (7)0.9084 (4)0.8672 (4)0.0218 (12)
C270.7028 (7)0.9509 (4)0.9582 (3)0.0193 (12)
C280.6543 (7)0.8737 (4)1.0285 (3)0.0196 (12)
C290.7021 (7)0.9217 (4)1.1244 (3)0.0196 (12)
C300.6537 (7)0.8511 (5)1.1930 (3)0.0221 (12)
H300.58690.77051.17810.027*
C310.7009 (8)0.8955 (4)1.2837 (3)0.0224 (12)
H310.66660.84491.32990.027*
C320.6916 (9)0.9996 (6)0.6386 (4)0.0317 (14)
H32A0.64610.95080.58090.047*
H32B0.83381.03700.64710.047*
H32C0.62161.06000.63740.047*
U11U22U33U12U13U23
O10.025 (2)0.0202 (19)0.0184 (19)0.0103 (16)0.0018 (15)0.0029 (15)
O20.027 (2)0.0162 (19)0.023 (2)0.0089 (16)0.0025 (16)0.0009 (15)
O30.026 (2)0.0153 (18)0.020 (2)0.0053 (16)0.0048 (16)0.0001 (15)
O40.023 (2)0.025 (2)0.0140 (19)0.0080 (16)0.0030 (15)−0.0005 (15)
O50.048 (3)0.018 (2)0.025 (2)−0.0013 (19)0.0036 (19)−0.0023 (16)
O60.035 (2)0.018 (2)0.028 (2)0.0044 (18)0.0015 (17)−0.0022 (16)
O70.037 (2)0.026 (2)0.024 (2)0.0076 (19)0.0049 (18)−0.0012 (17)
O80.033 (2)0.038 (2)0.014 (2)0.0150 (19)−0.0003 (16)−0.0025 (17)
C10.021 (3)0.033 (3)0.024 (3)0.010 (3)0.011 (2)0.007 (2)
C20.011 (3)0.028 (3)0.017 (3)0.007 (2)−0.001 (2)0.003 (2)
C30.012 (3)0.020 (3)0.023 (3)0.005 (2)0.000 (2)0.005 (2)
C40.006 (2)0.025 (3)0.017 (3)0.005 (2)−0.002 (2)−0.004 (2)
C50.008 (3)0.020 (3)0.019 (3)0.005 (2)0.000 (2)0.000 (2)
C60.008 (3)0.022 (3)0.015 (3)0.005 (2)−0.003 (2)0.000 (2)
C70.010 (3)0.013 (2)0.020 (3)0.002 (2)0.004 (2)0.001 (2)
C80.016 (3)0.023 (3)0.016 (3)0.008 (2)−0.001 (2)−0.005 (2)
C90.013 (3)0.025 (3)0.016 (3)0.005 (2)0.002 (2)0.004 (2)
C100.010 (3)0.022 (3)0.015 (3)0.004 (2)−0.001 (2)0.004 (2)
C110.011 (3)0.018 (3)0.015 (3)0.007 (2)−0.004 (2)−0.001 (2)
C120.010 (3)0.022 (3)0.019 (3)0.004 (2)−0.002 (2)0.000 (2)
C130.007 (2)0.021 (3)0.016 (3)0.007 (2)0.0013 (19)0.002 (2)
C140.017 (3)0.019 (3)0.018 (3)0.007 (2)−0.002 (2)−0.001 (2)
C150.015 (3)0.027 (3)0.014 (3)0.006 (2)−0.003 (2)−0.005 (2)
C160.031 (3)0.034 (3)0.020 (3)0.003 (3)0.005 (2)0.000 (2)
C170.034 (3)0.027 (3)0.018 (3)0.011 (3)−0.001 (2)0.002 (2)
C180.017 (3)0.028 (3)0.018 (3)0.013 (2)0.000 (2)0.002 (2)
C190.020 (3)0.022 (3)0.019 (3)0.009 (2)−0.003 (2)−0.002 (2)
C200.017 (3)0.023 (3)0.014 (3)0.013 (2)0.003 (2)0.000 (2)
C210.019 (3)0.025 (3)0.024 (3)0.011 (3)0.001 (2)0.004 (2)
C220.022 (3)0.025 (3)0.017 (3)0.012 (2)0.003 (2)0.004 (2)
C230.021 (3)0.026 (3)0.021 (3)0.005 (2)0.005 (2)0.000 (2)
C240.028 (3)0.031 (3)0.013 (3)0.010 (3)0.003 (2)0.005 (2)
C250.019 (3)0.042 (3)0.015 (3)0.015 (3)0.006 (2)−0.002 (2)
C260.015 (3)0.022 (3)0.030 (3)0.010 (2)0.004 (2)0.000 (2)
C270.013 (3)0.025 (3)0.022 (3)0.010 (2)0.003 (2)0.002 (2)
C280.009 (3)0.026 (3)0.025 (3)0.008 (2)0.000 (2)0.000 (2)
C290.014 (3)0.020 (3)0.026 (3)0.010 (2)−0.001 (2)−0.002 (2)
C300.020 (3)0.025 (3)0.027 (3)0.012 (2)0.007 (2)0.007 (2)
C310.027 (3)0.022 (3)0.022 (3)0.012 (2)0.008 (2)0.010 (2)
C320.030 (3)0.056 (4)0.013 (3)0.017 (3)0.008 (2)0.005 (3)
O1—C51.235 (6)C14—C151.377 (7)
O2—C121.243 (6)C14—H140.9500
O3—C101.351 (6)C15—H150.9500
O3—H30.8400C16—H16A0.9800
O4—C91.360 (6)C16—H16B0.9800
O4—C161.426 (6)C16—H16C0.9800
O5—C211.242 (6)C17—C181.502 (7)
O6—C281.251 (6)C17—H17A0.9800
O7—C261.356 (6)C17—H17B0.9800
O7—H70.8400C17—H17C0.9800
O8—C251.359 (6)C18—C191.390 (7)
O8—C321.429 (6)C18—C311.396 (7)
C1—C21.509 (7)C19—C201.382 (7)
C1—H1A0.9800C19—H190.9500
C1—H1B0.9800C20—C291.429 (7)
C1—H1C0.9800C20—C211.469 (7)
C2—C31.383 (7)C21—C221.470 (7)
C2—C151.404 (7)C22—C231.375 (7)
C3—C41.394 (7)C22—C271.434 (7)
C3—H3A0.9500C23—C241.392 (7)
C4—C131.402 (7)C23—H230.9500
C4—C51.483 (7)C24—C251.376 (8)
C5—C61.478 (7)C24—H240.9500
C6—C71.372 (7)C25—C261.402 (7)
C6—C111.428 (7)C26—C271.390 (7)
C7—C81.397 (7)C27—C281.443 (7)
C7—H7A0.9500C28—C291.476 (7)
C8—C91.395 (7)C29—C301.377 (7)
C8—H80.9500C30—C311.392 (7)
C9—C101.397 (7)C30—H300.9500
C10—C111.406 (7)C31—H310.9500
C11—C121.459 (7)C32—H32A0.9800
C12—C131.487 (7)C32—H32B0.9800
C13—C141.386 (7)C32—H32C0.9800
C10—O3—H3109.5H16A—C16—H16C109.5
C9—O4—C16117.9 (4)H16B—C16—H16C109.5
C26—O7—H7109.5C18—C17—H17A109.5
C25—O8—C32117.7 (4)C18—C17—H17B109.5
C2—C1—H1A109.5H17A—C17—H17B109.5
C2—C1—H1B109.5C18—C17—H17C109.5
H1A—C1—H1B109.5H17A—C17—H17C109.5
C2—C1—H1C109.5H17B—C17—H17C109.5
H1A—C1—H1C109.5C19—C18—C31118.3 (5)
H1B—C1—H1C109.5C19—C18—C17122.3 (5)
C3—C2—C15118.9 (5)C31—C18—C17119.3 (5)
C3—C2—C1121.5 (5)C20—C19—C18122.1 (5)
C15—C2—C1119.7 (5)C20—C19—H19119.0
C2—C3—C4121.4 (5)C18—C19—H19119.0
C2—C3—H3A119.3C19—C20—C29119.1 (5)
C4—C3—H3A119.3C19—C20—C21120.8 (5)
C3—C4—C13118.9 (5)C29—C20—C21120.0 (4)
C3—C4—C5119.9 (4)O5—C21—C22120.6 (5)
C13—C4—C5121.1 (4)O5—C21—C20120.1 (5)
O1—C5—C6120.5 (4)C22—C21—C20119.2 (5)
O1—C5—C4121.3 (4)C23—C22—C27118.8 (5)
C6—C5—C4118.2 (4)C23—C22—C21121.1 (5)
C7—C6—C11118.8 (4)C27—C22—C21120.1 (4)
C7—C6—C5121.2 (4)C22—C23—C24121.7 (5)
C11—C6—C5120.0 (4)C22—C23—H23119.1
C6—C7—C8122.5 (4)C24—C23—H23119.1
C6—C7—H7A118.8C25—C24—C23120.4 (5)
C8—C7—H7A118.8C25—C24—H24119.8
C9—C8—C7119.0 (5)C23—C24—H24119.8
C9—C8—H8120.5O8—C25—C24125.8 (5)
C7—C8—H8120.5O8—C25—C26115.3 (5)
O4—C9—C10115.4 (4)C24—C25—C26119.0 (5)
O4—C9—C8124.5 (5)O7—C26—C27121.6 (5)
C10—C9—C8120.1 (4)O7—C26—C25116.7 (5)
O3—C10—C9117.9 (4)C27—C26—C25121.7 (5)
O3—C10—C11121.6 (4)C26—C27—C22118.5 (5)
C9—C10—C11120.5 (4)C26—C27—C28120.8 (5)
C10—C11—C6119.1 (4)C22—C27—C28120.7 (5)
C10—C11—C12119.6 (4)O6—C28—C27121.4 (5)
C6—C11—C12121.3 (4)O6—C28—C29119.1 (5)
O2—C12—C11121.5 (4)C27—C28—C29119.5 (5)
O2—C12—C13120.0 (4)C30—C29—C20118.6 (5)
C11—C12—C13118.5 (4)C30—C29—C28121.0 (5)
C14—C13—C4119.9 (4)C20—C29—C28120.3 (5)
C14—C13—C12119.5 (4)C29—C30—C31121.3 (5)
C4—C13—C12120.6 (4)C29—C30—H30119.3
C15—C14—C13120.6 (5)C31—C30—H30119.3
C15—C14—H14119.7C30—C31—C18120.5 (5)
C13—C14—H14119.7C30—C31—H31119.7
C14—C15—C2120.3 (5)C18—C31—H31119.7
C14—C15—H15119.8O8—C32—H32A109.5
C2—C15—H15119.8O8—C32—H32B109.5
O4—C16—H16A109.5H32A—C32—H32B109.5
O4—C16—H16B109.5O8—C32—H32C109.5
H16A—C16—H16B109.5H32A—C32—H32C109.5
O4—C16—H16C109.5H32B—C32—H32C109.5
C15—C2—C3—C4−1.8 (7)C31—C18—C19—C20−0.9 (7)
C1—C2—C3—C4177.5 (4)C17—C18—C19—C20−178.7 (5)
C2—C3—C4—C131.3 (7)C18—C19—C20—C290.0 (7)
C2—C3—C4—C5178.1 (4)C18—C19—C20—C21179.4 (4)
C3—C4—C5—O1−1.6 (7)C19—C20—C21—O5−0.3 (7)
C13—C4—C5—O1175.1 (5)C29—C20—C21—O5179.1 (5)
C3—C4—C5—C6176.7 (4)C19—C20—C21—C22179.6 (4)
C13—C4—C5—C6−6.6 (6)C29—C20—C21—C22−1.0 (7)
O1—C5—C6—C71.9 (7)O5—C21—C22—C23−0.8 (8)
C4—C5—C6—C7−176.5 (4)C20—C21—C22—C23179.3 (4)
O1—C5—C6—C11−176.2 (4)O5—C21—C22—C27−179.5 (5)
C4—C5—C6—C115.4 (6)C20—C21—C22—C270.6 (7)
C11—C6—C7—C8−1.7 (7)C27—C22—C23—C24−1.1 (7)
C5—C6—C7—C8−179.8 (4)C21—C22—C23—C24−179.8 (5)
C6—C7—C8—C91.3 (7)C22—C23—C24—C250.7 (8)
C16—O4—C9—C10−175.1 (4)C32—O8—C25—C24−1.8 (7)
C16—O4—C9—C85.6 (7)C32—O8—C25—C26178.9 (4)
C7—C8—C9—O4178.8 (4)C23—C24—C25—O8−179.5 (5)
C7—C8—C9—C10−0.4 (7)C23—C24—C25—C26−0.2 (7)
O4—C9—C10—O30.8 (6)O8—C25—C26—O7−2.4 (7)
C8—C9—C10—O3−179.9 (4)C24—C25—C26—O7178.3 (4)
O4—C9—C10—C11−179.4 (4)O8—C25—C26—C27179.5 (4)
C8—C9—C10—C11−0.1 (7)C24—C25—C26—C270.2 (7)
O3—C10—C11—C6179.5 (4)O7—C26—C27—C22−178.6 (4)
C9—C10—C11—C6−0.2 (7)C25—C26—C27—C22−0.5 (7)
O3—C10—C11—C120.1 (7)O7—C26—C27—C281.7 (7)
C9—C10—C11—C12−179.6 (4)C25—C26—C27—C28179.7 (4)
C7—C6—C11—C101.1 (7)C23—C22—C27—C261.0 (7)
C5—C6—C11—C10179.2 (4)C21—C22—C27—C26179.7 (4)
C7—C6—C11—C12−179.6 (4)C23—C22—C27—C28−179.2 (4)
C5—C6—C11—C12−1.4 (7)C21—C22—C27—C28−0.5 (7)
C10—C11—C12—O2−2.0 (7)C26—C27—C28—O61.1 (7)
C6—C11—C12—O2178.7 (4)C22—C27—C28—O6−178.6 (5)
C10—C11—C12—C13177.7 (4)C26—C27—C28—C29−179.5 (4)
C6—C11—C12—C13−1.7 (7)C22—C27—C28—C290.8 (7)
C3—C4—C13—C140.0 (7)C19—C20—C29—C301.1 (7)
C5—C4—C13—C14−176.7 (4)C21—C20—C29—C30−178.3 (4)
C3—C4—C13—C12−179.6 (4)C19—C20—C29—C28−179.3 (4)
C5—C4—C13—C123.6 (7)C21—C20—C29—C281.3 (7)
O2—C12—C13—C140.6 (7)O6—C28—C29—C30−2.1 (7)
C11—C12—C13—C14−179.1 (4)C27—C28—C29—C30178.4 (4)
O2—C12—C13—C4−179.7 (4)O6—C28—C29—C20178.3 (4)
C11—C12—C13—C40.6 (6)C27—C28—C29—C20−1.2 (7)
C4—C13—C14—C15−0.8 (7)C20—C29—C30—C31−1.3 (7)
C12—C13—C14—C15178.9 (4)C28—C29—C30—C31179.1 (4)
C13—C14—C15—C20.2 (7)C29—C30—C31—C180.4 (7)
C3—C2—C15—C141.1 (7)C19—C18—C31—C300.7 (7)
C1—C2—C15—C14−178.3 (4)C17—C18—C31—C30178.6 (5)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.841.802.538 (4)147
O7—H7···O60.841.812.551 (5)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.841.802.538 (4)147
O7—H7⋯O60.841.812.551 (5)146
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,3-Dihydr-oxy-2-methoxy-methyl-9,10-anthraquinone from Rennellia elliptica Korth.

Authors:  Nor Hadiani Ismail; Che Puteh Osman; Rohaya Ahmad; Khalijah Awang; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29
  2 in total
  1 in total

1.  Anthraquinones with antiplasmodial activity from the roots of Rennellia elliptica Korth. (Rubiaceae).

Authors:  Che Puteh Osman; Nor Hadiani Ismail; Rohaya Ahmad; Norizan Ahmat; Khalijah Awang; Faridahanim Mohd Jaafar
Journal:  Molecules       Date:  2010-10-20       Impact factor: 4.411

  1 in total

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