Literature DB >> 21583262

r-2,c-6-Bis(4-methoxy-phenyl)-c-3,t-3-dimethyl-1-nitro-sopiperidin-4-one.

T Kavitha, S Ponnuswamy, P Sakthivel, K Karthik, M N Ponnuswamy.   

Abstract

In the title compound, C(21)H(24)N(2)O(4), the piperidine ring adopts a distorted boat conformation. The crystal structure is stabilized by C-H⋯π inter-actions involving one of the methoxy-phenyl rings.

Entities:  

Year:  2009        PMID: 21583262      PMCID: PMC2969687          DOI: 10.1107/S1600536809019357

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperidones, see: Dimmock et al. (1990 ▶); Mutus et al. (1989 ▶); Perumal et al. (2001 ▶). For ring conformations, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C21H24N2O4 M = 368.42 Orthorhombic, a = 7.2540 (3) Å b = 15.0469 (6) Å c = 17.0741 (7) Å V = 1863.64 (13) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.973, T max = 0.982 24656 measured reflections 3211 independent reflections 2595 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.03 3211 reflections 244 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PARST (Nardelli, 1983 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809019357/ci2805sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019357/ci2805Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H24N2O4F(000) = 784
Mr = 368.42Dx = 1.313 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3211 reflections
a = 7.2540 (3) Åθ = 2.4–30.5°
b = 15.0469 (6) ŵ = 0.09 mm1
c = 17.0741 (7) ÅT = 293 K
V = 1863.64 (13) Å3Block, colourless
Z = 40.30 × 0.25 × 0.20 mm
Bruker Kappa-APEXII CCD area-detector diffractometer3211 independent reflections
Radiation source: fine-focus sealed tube2595 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 30.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −10→10
Tmin = 0.973, Tmax = 0.982k = −21→21
24656 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0532P)2 + 0.2754P] where P = (Fo2 + 2Fc2)/3
3211 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.0483 (2)0.52808 (12)0.21105 (9)0.0433 (4)
C20.1305 (2)0.58054 (13)0.27489 (10)0.0417 (4)
H20.02760.60150.30720.050*
C30.2206 (3)0.66398 (14)0.23982 (11)0.0453 (4)
C40.3709 (3)0.63719 (14)0.18259 (11)0.0478 (4)
C50.3450 (3)0.54846 (14)0.14164 (11)0.0464 (4)
H5A0.42350.50540.16750.056*
H5B0.38980.55470.08840.056*
C60.1494 (3)0.50917 (13)0.13767 (10)0.0419 (4)
H60.08400.53920.09500.050*
N7−0.1331 (2)0.51769 (14)0.21570 (12)0.0589 (5)
C80.2461 (3)0.52025 (13)0.32719 (10)0.0413 (4)
C90.4369 (3)0.51945 (15)0.33242 (11)0.0461 (4)
H90.50480.55890.30200.055*
C100.5290 (3)0.46138 (15)0.38177 (12)0.0500 (5)
H100.65710.46200.38370.060*
C110.4317 (3)0.40259 (13)0.42807 (12)0.0484 (4)
C120.2405 (3)0.40122 (16)0.42284 (13)0.0562 (5)
H120.17300.36110.45280.067*
C130.1513 (3)0.45897 (15)0.37357 (12)0.0517 (5)
H130.02330.45730.37100.062*
C150.2886 (4)0.72672 (16)0.30428 (13)0.0581 (5)
H15A0.34450.77810.28090.087*
H15B0.37770.69650.33620.087*
H15C0.18630.74490.33610.087*
C140.0774 (3)0.71461 (16)0.18933 (14)0.0578 (5)
H14A0.13370.76660.16730.087*
H14B−0.02510.73190.22150.087*
H14C0.03470.67670.14790.087*
C160.1535 (2)0.41093 (12)0.11881 (10)0.0393 (4)
C170.2309 (3)0.34891 (14)0.16965 (10)0.0449 (4)
H170.27930.36770.21730.054*
C180.2366 (3)0.26016 (14)0.15030 (11)0.0443 (4)
H180.28890.21950.18480.053*
C190.1647 (2)0.23100 (12)0.07945 (10)0.0402 (4)
C200.0887 (3)0.29189 (13)0.02797 (11)0.0430 (4)
H200.04140.2731−0.01990.052*
C210.0838 (3)0.38045 (14)0.04814 (10)0.0431 (4)
H210.03220.42100.01340.052*
C220.7010 (4)0.34767 (19)0.49303 (17)0.0719 (7)
H22A0.73490.30450.53180.108*
H22B0.73580.40590.51070.108*
H22C0.76320.33460.44480.108*
C230.1004 (4)0.10995 (15)−0.00595 (14)0.0605 (6)
H23A0.11520.0466−0.00890.091*
H23B0.16380.1374−0.04900.091*
H23C−0.02830.1245−0.00850.091*
O10.5033 (3)0.68301 (12)0.16938 (12)0.0732 (5)
O2−0.2050 (2)0.48520 (14)0.15739 (11)0.0753 (5)
O30.5071 (3)0.34479 (11)0.48087 (10)0.0640 (4)
O40.1751 (2)0.14144 (9)0.06582 (8)0.0509 (3)
U11U22U33U12U13U23
N10.0311 (6)0.0576 (9)0.0412 (7)0.0002 (7)0.0008 (6)−0.0093 (7)
C20.0358 (8)0.0543 (10)0.0348 (8)−0.0009 (8)0.0034 (7)−0.0084 (7)
C30.0446 (9)0.0519 (10)0.0393 (8)0.0004 (8)0.0037 (8)−0.0051 (8)
C40.0461 (10)0.0531 (11)0.0442 (9)−0.0003 (9)0.0077 (8)0.0035 (8)
C50.0432 (9)0.0573 (11)0.0387 (8)0.0012 (9)0.0088 (8)−0.0034 (8)
C60.0403 (8)0.0522 (10)0.0331 (8)0.0041 (8)−0.0015 (7)−0.0029 (7)
N70.0347 (8)0.0767 (12)0.0654 (11)−0.0027 (8)−0.0038 (8)−0.0179 (10)
C80.0390 (8)0.0525 (11)0.0323 (7)−0.0055 (8)0.0015 (7)−0.0049 (8)
C90.0401 (9)0.0592 (11)0.0389 (9)−0.0079 (9)0.0024 (7)0.0025 (9)
C100.0432 (9)0.0621 (12)0.0449 (10)−0.0046 (9)−0.0008 (9)−0.0002 (9)
C110.0600 (12)0.0453 (10)0.0400 (9)−0.0028 (9)0.0003 (9)−0.0036 (8)
C120.0600 (12)0.0569 (12)0.0516 (11)−0.0158 (10)0.0075 (10)0.0059 (10)
C130.0410 (9)0.0638 (13)0.0504 (10)−0.0121 (10)0.0056 (9)0.0009 (10)
C150.0579 (12)0.0581 (12)0.0582 (12)−0.0077 (10)0.0029 (11)−0.0143 (10)
C140.0607 (13)0.0600 (12)0.0527 (11)0.0116 (11)−0.0001 (11)−0.0026 (10)
C160.0356 (8)0.0494 (9)0.0329 (7)0.0046 (8)−0.0010 (7)−0.0024 (7)
C170.0425 (9)0.0604 (11)0.0319 (8)0.0043 (9)−0.0063 (7)−0.0014 (8)
C180.0390 (9)0.0555 (11)0.0383 (8)0.0070 (8)−0.0033 (7)0.0074 (8)
C190.0324 (8)0.0480 (9)0.0403 (8)0.0009 (7)0.0050 (7)0.0008 (7)
C200.0420 (9)0.0533 (10)0.0336 (8)0.0022 (8)−0.0047 (7)−0.0021 (8)
C210.0432 (9)0.0523 (10)0.0337 (8)0.0060 (8)−0.0065 (7)0.0020 (8)
C220.0729 (16)0.0707 (16)0.0723 (15)0.0205 (14)−0.0010 (14)0.0133 (13)
C230.0649 (13)0.0527 (12)0.0638 (13)−0.0002 (11)−0.0052 (12)−0.0134 (11)
O10.0684 (10)0.0652 (10)0.0858 (13)−0.0185 (9)0.0299 (10)−0.0047 (9)
O20.0420 (8)0.1026 (14)0.0812 (11)0.0025 (9)−0.0132 (8)−0.0327 (11)
O30.0740 (11)0.0592 (9)0.0589 (9)−0.0050 (9)−0.0057 (9)0.0118 (8)
O40.0543 (8)0.0467 (7)0.0516 (7)0.0036 (6)−0.0011 (7)0.0001 (6)
N1—N71.328 (2)C13—H130.93
N1—C21.472 (2)C15—H15A0.96
N1—C61.479 (2)C15—H15B0.96
C2—C81.524 (3)C15—H15C0.96
C2—C31.537 (3)C14—H14A0.96
C2—H20.98C14—H14B0.96
C3—C41.519 (3)C14—H14C0.96
C3—C151.532 (3)C16—C211.386 (2)
C3—C141.550 (3)C16—C171.393 (3)
C4—O11.204 (2)C17—C181.376 (3)
C4—C51.519 (3)C17—H170.93
C5—C61.539 (3)C18—C191.389 (3)
C5—H5A0.97C18—H180.93
C5—H5B0.97C19—O41.370 (2)
C6—C161.513 (3)C19—C201.384 (3)
C6—H60.98C20—C211.377 (3)
N7—O21.225 (2)C20—H200.93
C8—C91.387 (3)C21—H210.93
C8—C131.396 (3)C22—O31.423 (3)
C9—C101.385 (3)C22—H22A0.96
C9—H90.93C22—H22B0.96
C10—C111.380 (3)C22—H22C0.96
C10—H100.93C23—O41.421 (3)
C11—O31.367 (3)C23—H23A0.96
C11—C121.390 (3)C23—H23B0.96
C12—C131.372 (3)C23—H23C0.96
C12—H120.93
N7—N1—C2114.87 (16)C12—C13—H13118.9
N7—N1—C6121.28 (17)C8—C13—H13118.9
C2—N1—C6121.97 (14)C3—C15—H15A109.5
N1—C2—C8109.72 (15)C3—C15—H15B109.5
N1—C2—C3108.78 (15)H15A—C15—H15B109.5
C8—C2—C3118.74 (16)C3—C15—H15C109.5
N1—C2—H2106.3H15A—C15—H15C109.5
C8—C2—H2106.3H15B—C15—H15C109.5
C3—C2—H2106.3C3—C14—H14A109.5
C4—C3—C15113.24 (18)C3—C14—H14B109.5
C4—C3—C2109.81 (16)H14A—C14—H14B109.5
C15—C3—C2111.14 (16)C3—C14—H14C109.5
C4—C3—C14104.71 (16)H14A—C14—H14C109.5
C15—C3—C14108.22 (18)H14B—C14—H14C109.5
C2—C3—C14109.47 (17)C21—C16—C17117.90 (17)
O1—C4—C5121.09 (19)C21—C16—C6120.07 (16)
O1—C4—C3122.78 (19)C17—C16—C6122.00 (16)
C5—C4—C3116.13 (17)C18—C17—C16120.84 (17)
C4—C5—C6118.19 (17)C18—C17—H17119.6
C4—C5—H5A107.8C16—C17—H17119.6
C6—C5—H5A107.8C17—C18—C19120.29 (18)
C4—C5—H5B107.8C17—C18—H18119.9
C6—C5—H5B107.8C19—C18—H18119.9
H5A—C5—H5B107.1O4—C19—C20124.43 (17)
N1—C6—C16112.22 (16)O4—C19—C18115.98 (17)
N1—C6—C5110.23 (15)C20—C19—C18119.58 (18)
C16—C6—C5111.48 (16)C21—C20—C19119.48 (17)
N1—C6—H6107.6C21—C20—H20120.3
C16—C6—H6107.6C19—C20—H20120.3
C5—C6—H6107.6C20—C21—C16121.90 (17)
O2—N7—N1114.82 (19)C20—C21—H21119.1
C9—C8—C13116.69 (19)C16—C21—H21119.1
C9—C8—C2126.27 (18)O3—C22—H22A109.5
C13—C8—C2117.03 (17)O3—C22—H22B109.5
C10—C9—C8121.70 (19)H22A—C22—H22B109.5
C10—C9—H9119.2O3—C22—H22C109.5
C8—C9—H9119.2H22A—C22—H22C109.5
C11—C10—C9120.41 (19)H22B—C22—H22C109.5
C11—C10—H10119.8O4—C23—H23A109.5
C9—C10—H10119.8O4—C23—H23B109.5
O3—C11—C10125.5 (2)H23A—C23—H23B109.5
O3—C11—C12115.6 (2)O4—C23—H23C109.5
C10—C11—C12118.9 (2)H23A—C23—H23C109.5
C13—C12—C11120.0 (2)H23B—C23—H23C109.5
C13—C12—H12120.0C11—O3—C22118.20 (19)
C11—C12—H12120.0C19—O4—C23116.96 (16)
C12—C13—C8122.26 (19)
N7—N1—C2—C8110.4 (2)C3—C2—C8—C13164.11 (17)
C6—N1—C2—C8−85.0 (2)C13—C8—C9—C10−0.6 (3)
N7—N1—C2—C3−118.2 (2)C2—C8—C9—C10−179.66 (17)
C6—N1—C2—C346.4 (2)C8—C9—C10—C11−0.6 (3)
N1—C2—C3—C4−60.6 (2)C9—C10—C11—O3−177.43 (19)
C8—C2—C3—C465.7 (2)C9—C10—C11—C121.6 (3)
N1—C2—C3—C15173.29 (16)O3—C11—C12—C13177.69 (18)
C8—C2—C3—C15−60.3 (2)C10—C11—C12—C13−1.4 (3)
N1—C2—C3—C1453.80 (19)C11—C12—C13—C80.2 (3)
C8—C2—C3—C14−179.83 (16)C9—C8—C13—C120.8 (3)
C15—C3—C4—O1−26.9 (3)C2—C8—C13—C12179.92 (19)
C2—C3—C4—O1−151.7 (2)N1—C6—C16—C21122.51 (18)
C14—C3—C4—O190.8 (3)C5—C6—C16—C21−113.29 (19)
C15—C3—C4—C5153.57 (19)N1—C6—C16—C17−59.4 (2)
C2—C3—C4—C528.7 (2)C5—C6—C16—C1764.8 (2)
C14—C3—C4—C5−88.7 (2)C21—C16—C17—C18−0.4 (3)
O1—C4—C5—C6−158.8 (2)C6—C16—C17—C18−178.54 (18)
C3—C4—C5—C620.8 (3)C16—C17—C18—C19−0.1 (3)
N7—N1—C6—C16−69.4 (2)C17—C18—C19—O4−179.38 (18)
C2—N1—C6—C16127.05 (19)C17—C18—C19—C200.6 (3)
N7—N1—C6—C5165.7 (2)O4—C19—C20—C21179.33 (18)
C2—N1—C6—C52.1 (2)C18—C19—C20—C21−0.7 (3)
C4—C5—C6—N1−37.0 (2)C19—C20—C21—C160.2 (3)
C4—C5—C6—C16−162.27 (16)C17—C16—C21—C200.3 (3)
C2—N1—N7—O2170.12 (19)C6—C16—C21—C20178.52 (18)
C6—N1—N7—O25.4 (3)C10—C11—O3—C223.6 (3)
N1—C2—C8—C9109.0 (2)C12—C11—O3—C22−175.5 (2)
C3—C2—C8—C9−16.9 (3)C20—C19—O4—C23−0.7 (3)
N1—C2—C8—C13−70.0 (2)C18—C19—O4—C23179.28 (18)
D—H···AD—HH···AD···AD—H···A
C15—H15C···Cg1i0.962.973.9108 (26)167
C23—H23C···Cg1ii0.962.863.7201 (27)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C16–C21 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15CCg1i0.962.973.9108 (26)167
C23—H23CCg1ii0.962.863.7201 (27)149

Symmetry codes: (i) ; (ii) .

  4 in total

1.  3,5-Bis-benzylidene-4-piperidones and related compounds with high activity towards P388 leukemia cells.

Authors:  J R Dimmock; V K Arora; S L Wonko; N W Hamon; J W Quail; Z Jia; R C Warrington; W D Fang; J S Lee
Journal:  Drug Des Deliv       Date:  1990-09

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1-p-chlorophenyl-4,4-dimethyl-5-diethylamino-1-penten-3-one hydrobromide, a sulfhydryl-specific compound which reacts irreversibly with protein thiols but reversibly with small molecular weight thiols.

Authors:  B Mutus; J D Wagner; C J Talpas; J R Dimmock; O A Phillips; R S Reid
Journal:  Anal Biochem       Date:  1989-03       Impact factor: 3.365

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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