Literature DB >> 21583257

N-Benzyl-pyridine-2-sulfonamide.

Xiao-Ping Chen1, Shou-Fa Han.   

Abstract

The title compound, C(12)H(12)N(2)O(2)S, was obtained by the reaction of 2-mercaptopyridine and benzyl-amine. The dihedral angle between the benzene and pyridine rings is 75.75 (9)°. In the crystal, mol-ecules are linked into chains along the c axis by N-H⋯O and N-H⋯N hydrogen bonds; the chains are cross-linked into a two-dimensional network parallel to the bc plane via C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583257      PMCID: PMC2969775          DOI: 10.1107/S1600536809018054

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Wright et al. (2006 ▶). For applications of sulfonamides, see: Connor (1998 ▶). For the structure of N-benzyl­quinoline-8-sulfonamide, see: Andrighetti-Fröhner et al. (2006 ▶).

Experimental

Crystal data

C12H12N2O2S M = 248.30 Monoclinic, a = 11.099 (2) Å b = 10.709 (2) Å c = 9.513 (2) Å β = 91.893 (4)° V = 1130.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 173 K 0.50 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.823, T max = 1.00 (expected range = 0.783–0.951) 5922 measured reflections 2195 independent reflections 2078 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.101 S = 1.00 2195 reflections 157 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.40 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018054/ci2800sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018054/ci2800Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2O2SF(000) = 520
Mr = 248.30Dx = 1.459 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4484 reflections
a = 11.099 (2) Åθ = 2.6–28.2°
b = 10.709 (2) ŵ = 0.28 mm1
c = 9.513 (2) ÅT = 173 K
β = 91.893 (4)°Needle, colourless
V = 1130.1 (4) Å30.50 × 0.20 × 0.18 mm
Z = 4
Bruker SMART APEX area-detector diffractometer2195 independent reflections
Radiation source: fine-focus sealed tube2078 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −12→13
Tmin = 0.823, Tmax = 1.00k = −11→13
5922 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0567P)2 + 0.7208P] where P = (Fo2 + 2Fc2)/3
2195 reflections(Δ/σ)max = 0.001
157 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.29480 (4)0.35956 (4)−0.07138 (4)0.02300 (15)
O10.23235 (11)0.37287 (12)−0.20382 (13)0.0297 (3)
O20.35175 (11)0.46543 (11)−0.00687 (13)0.0303 (3)
N10.20157 (13)0.30466 (14)0.03864 (16)0.0247 (3)
H10.2331 (19)0.299 (2)0.118 (2)0.030*
N20.37751 (14)0.15428 (14)−0.18353 (16)0.0288 (3)
C10.40853 (15)0.24506 (16)−0.09461 (17)0.0242 (4)
C20.51786 (16)0.25414 (18)−0.02210 (19)0.0296 (4)
H20.53530.32190.03970.036*
C30.60085 (17)0.16046 (19)−0.0433 (2)0.0336 (4)
H30.67750.16220.00410.040*
C40.57087 (17)0.06477 (18)−0.13383 (19)0.0332 (4)
H40.6264−0.0009−0.14970.040*
C50.45909 (17)0.06519 (18)−0.20149 (19)0.0329 (4)
H50.4393−0.0014−0.26400.039*
C60.11909 (16)0.20325 (17)−0.00404 (19)0.0297 (4)
H6A0.16270.12260.00060.036*
H6B0.09030.2166−0.10250.036*
C70.01310 (15)0.19830 (16)0.09002 (17)0.0240 (4)
C8−0.01617 (16)0.08823 (16)0.15529 (19)0.0274 (4)
H80.03220.01620.14240.033*
C9−0.11535 (16)0.08132 (18)0.23949 (19)0.0321 (4)
H9−0.13540.00460.28300.039*
C10−0.18463 (17)0.18527 (19)0.2601 (2)0.0345 (4)
H10−0.25230.18090.31850.041*
C11−0.15598 (17)0.29609 (18)0.1958 (2)0.0353 (4)
H11−0.20370.36830.21040.042*
C12−0.05840 (17)0.30255 (17)0.1105 (2)0.0301 (4)
H12−0.03990.37900.06530.036*
U11U22U33U12U13U23
S10.0240 (2)0.0224 (2)0.0226 (2)−0.00314 (15)0.00148 (16)0.00164 (15)
O10.0300 (6)0.0336 (7)0.0254 (7)−0.0023 (5)−0.0006 (5)0.0055 (5)
O20.0312 (6)0.0233 (6)0.0364 (7)−0.0054 (5)−0.0001 (5)0.0000 (5)
N10.0253 (7)0.0274 (8)0.0215 (7)−0.0047 (6)0.0020 (6)−0.0024 (6)
N20.0323 (8)0.0296 (8)0.0245 (8)−0.0012 (6)0.0005 (6)−0.0012 (6)
C10.0248 (8)0.0264 (8)0.0215 (8)−0.0040 (7)0.0046 (6)0.0024 (6)
C20.0260 (9)0.0326 (9)0.0303 (9)−0.0045 (7)0.0012 (7)0.0000 (7)
C30.0259 (9)0.0405 (10)0.0346 (10)−0.0009 (8)0.0040 (7)0.0058 (8)
C40.0355 (10)0.0352 (10)0.0295 (9)0.0068 (8)0.0098 (7)0.0040 (8)
C50.0415 (10)0.0307 (9)0.0266 (9)0.0020 (8)0.0039 (8)−0.0030 (7)
C60.0315 (9)0.0287 (9)0.0293 (9)−0.0085 (7)0.0084 (7)−0.0066 (7)
C70.0233 (8)0.0270 (8)0.0217 (8)−0.0053 (7)0.0000 (6)−0.0029 (6)
C80.0276 (8)0.0240 (8)0.0306 (9)−0.0019 (7)0.0003 (7)−0.0022 (7)
C90.0340 (9)0.0310 (9)0.0315 (9)−0.0079 (8)0.0042 (7)0.0035 (8)
C100.0275 (9)0.0421 (11)0.0343 (10)−0.0065 (8)0.0088 (7)−0.0059 (8)
C110.0292 (9)0.0331 (10)0.0438 (11)0.0038 (8)0.0020 (8)−0.0049 (8)
C120.0329 (9)0.0251 (9)0.0323 (9)−0.0015 (7)−0.0008 (7)0.0022 (7)
S1—O11.4249 (13)C5—H50.95
S1—O21.4268 (13)C6—C71.502 (2)
S1—N11.6073 (15)C6—H6A0.99
S1—C11.7787 (18)C6—H6B0.99
N1—C61.469 (2)C7—C81.376 (2)
N1—H10.82 (2)C7—C121.387 (3)
N2—C11.327 (2)C8—C91.385 (3)
N2—C51.330 (2)C8—H80.95
C1—C21.379 (2)C9—C101.371 (3)
C2—C31.381 (3)C9—H90.95
C2—H20.95C10—C111.377 (3)
C3—C41.373 (3)C10—H100.95
C3—H30.95C11—C121.376 (3)
C4—C51.379 (3)C11—H110.95
C4—H40.95C12—H120.95
O1—S1—O2119.76 (8)N1—C6—C7110.77 (14)
O1—S1—N1107.91 (8)N1—C6—H6A109.5
O2—S1—N1107.23 (8)C7—C6—H6A109.5
O1—S1—C1106.59 (8)N1—C6—H6B109.5
O2—S1—C1107.16 (8)C7—C6—H6B109.5
N1—S1—C1107.67 (8)H6A—C6—H6B108.1
C6—N1—S1119.95 (12)C8—C7—C12118.78 (16)
C6—N1—H1116.0 (15)C8—C7—C6120.01 (16)
S1—N1—H1111.2 (15)C12—C7—C6121.20 (16)
C1—N2—C5116.37 (15)C7—C8—C9120.72 (17)
N2—C1—C2125.17 (17)C7—C8—H8119.6
N2—C1—S1114.46 (13)C9—C8—H8119.6
C2—C1—S1120.36 (14)C10—C9—C8119.98 (17)
C1—C2—C3117.12 (17)C10—C9—H9120.0
C1—C2—H2121.4C8—C9—H9120.0
C3—C2—H2121.4C9—C10—C11119.85 (18)
C4—C3—C2119.00 (18)C9—C10—H10120.1
C4—C3—H3120.5C11—C10—H10120.1
C2—C3—H3120.5C12—C11—C10120.18 (18)
C3—C4—C5119.10 (18)C12—C11—H11119.9
C3—C4—H4120.5C10—C11—H11119.9
C5—C4—H4120.5C11—C12—C7120.48 (17)
N2—C5—C4123.24 (17)C11—C12—H12119.8
N2—C5—H5118.4C7—C12—H12119.8
C4—C5—H5118.4
O1—S1—N1—C642.85 (16)C2—C3—C4—C50.3 (3)
O2—S1—N1—C6173.12 (13)C1—N2—C5—C4−0.4 (3)
C1—S1—N1—C6−71.85 (15)C3—C4—C5—N2−0.1 (3)
C5—N2—C1—C20.8 (3)S1—N1—C6—C7−159.20 (13)
C5—N2—C1—S1−178.54 (13)N1—C6—C7—C8−126.83 (17)
O1—S1—C1—N2−34.71 (14)N1—C6—C7—C1254.6 (2)
O2—S1—C1—N2−164.06 (12)C12—C7—C8—C90.2 (3)
N1—S1—C1—N280.87 (14)C6—C7—C8—C9−178.38 (16)
O1—S1—C1—C2145.94 (14)C7—C8—C9—C10−0.9 (3)
O2—S1—C1—C216.58 (16)C8—C9—C10—C110.6 (3)
N1—S1—C1—C2−98.49 (15)C9—C10—C11—C120.3 (3)
N2—C1—C2—C3−0.6 (3)C10—C11—C12—C7−1.0 (3)
S1—C1—C2—C3178.71 (13)C8—C7—C12—C110.7 (3)
C1—C2—C3—C40.0 (3)C6—C7—C12—C11179.29 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.82 (2)2.49 (2)3.264 (2)157 (2)
N1—H1···O1i0.82 (2)2.50 (2)3.111 (2)132 (2)
C4—H4···O1ii0.952.523.406 (2)154
C5—H5···O2iii0.952.513.121 (2)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N2i0.82 (2)2.49 (2)3.264 (2)157 (2)
N1—H1⋯O1i0.82 (2)2.50 (2)3.111 (2)132 (2)
C4—H4⋯O1ii0.952.523.406 (2)154
C5—H5⋯O2iii0.952.513.121 (2)122

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A convenient preparation of heteroaryl sulfonamides and sulfonyl fluorides from heteroaryl thiols.

Authors:  Stephen W Wright; Kelly N Hallstrom
Journal:  J Org Chem       Date:  2006-02-03       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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