| Literature DB >> 21583257 |
Abstract
The title compound, C(12)H(12)N(2)O(2)S, was obtained by the reaction of 2-mercaptopyridine and benzyl-amine. The dihedral angle between the benzene and pyridine rings is 75.75 (9)°. In the crystal, mol-ecules are linked into chains along the c axis by N-H⋯O and N-H⋯N hydrogen bonds; the chains are cross-linked into a two-dimensional network parallel to the bc plane via C-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21583257 PMCID: PMC2969775 DOI: 10.1107/S1600536809018054
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H12N2O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4484 reflections |
| θ = 2.6–28.2° | |
| µ = 0.28 mm−1 | |
| β = 91.893 (4)° | Needle, colourless |
| 0.50 × 0.20 × 0.18 mm | |
| Bruker SMART APEX area-detector diffractometer | 2195 independent reflections |
| Radiation source: fine-focus sealed tube | 2078 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 5922 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2195 reflections | (Δ/σ)max = 0.001 |
| 157 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.29480 (4) | 0.35956 (4) | −0.07138 (4) | 0.02300 (15) | |
| O1 | 0.23235 (11) | 0.37287 (12) | −0.20382 (13) | 0.0297 (3) | |
| O2 | 0.35175 (11) | 0.46543 (11) | −0.00687 (13) | 0.0303 (3) | |
| N1 | 0.20157 (13) | 0.30466 (14) | 0.03864 (16) | 0.0247 (3) | |
| H1 | 0.2331 (19) | 0.299 (2) | 0.118 (2) | 0.030* | |
| N2 | 0.37751 (14) | 0.15428 (14) | −0.18353 (16) | 0.0288 (3) | |
| C1 | 0.40853 (15) | 0.24506 (16) | −0.09461 (17) | 0.0242 (4) | |
| C2 | 0.51786 (16) | 0.25414 (18) | −0.02210 (19) | 0.0296 (4) | |
| H2 | 0.5353 | 0.3219 | 0.0397 | 0.036* | |
| C3 | 0.60085 (17) | 0.16046 (19) | −0.0433 (2) | 0.0336 (4) | |
| H3 | 0.6775 | 0.1622 | 0.0041 | 0.040* | |
| C4 | 0.57087 (17) | 0.06477 (18) | −0.13383 (19) | 0.0332 (4) | |
| H4 | 0.6264 | −0.0009 | −0.1497 | 0.040* | |
| C5 | 0.45909 (17) | 0.06519 (18) | −0.20149 (19) | 0.0329 (4) | |
| H5 | 0.4393 | −0.0014 | −0.2640 | 0.039* | |
| C6 | 0.11909 (16) | 0.20325 (17) | −0.00404 (19) | 0.0297 (4) | |
| H6A | 0.1627 | 0.1226 | 0.0006 | 0.036* | |
| H6B | 0.0903 | 0.2166 | −0.1025 | 0.036* | |
| C7 | 0.01310 (15) | 0.19830 (16) | 0.09002 (17) | 0.0240 (4) | |
| C8 | −0.01617 (16) | 0.08823 (16) | 0.15529 (19) | 0.0274 (4) | |
| H8 | 0.0322 | 0.0162 | 0.1424 | 0.033* | |
| C9 | −0.11535 (16) | 0.08132 (18) | 0.23949 (19) | 0.0321 (4) | |
| H9 | −0.1354 | 0.0046 | 0.2830 | 0.039* | |
| C10 | −0.18463 (17) | 0.18527 (19) | 0.2601 (2) | 0.0345 (4) | |
| H10 | −0.2523 | 0.1809 | 0.3185 | 0.041* | |
| C11 | −0.15598 (17) | 0.29609 (18) | 0.1958 (2) | 0.0353 (4) | |
| H11 | −0.2037 | 0.3683 | 0.2104 | 0.042* | |
| C12 | −0.05840 (17) | 0.30255 (17) | 0.1105 (2) | 0.0301 (4) | |
| H12 | −0.0399 | 0.3790 | 0.0653 | 0.036* |
| S1 | 0.0240 (2) | 0.0224 (2) | 0.0226 (2) | −0.00314 (15) | 0.00148 (16) | 0.00164 (15) |
| O1 | 0.0300 (6) | 0.0336 (7) | 0.0254 (7) | −0.0023 (5) | −0.0006 (5) | 0.0055 (5) |
| O2 | 0.0312 (6) | 0.0233 (6) | 0.0364 (7) | −0.0054 (5) | −0.0001 (5) | 0.0000 (5) |
| N1 | 0.0253 (7) | 0.0274 (8) | 0.0215 (7) | −0.0047 (6) | 0.0020 (6) | −0.0024 (6) |
| N2 | 0.0323 (8) | 0.0296 (8) | 0.0245 (8) | −0.0012 (6) | 0.0005 (6) | −0.0012 (6) |
| C1 | 0.0248 (8) | 0.0264 (8) | 0.0215 (8) | −0.0040 (7) | 0.0046 (6) | 0.0024 (6) |
| C2 | 0.0260 (9) | 0.0326 (9) | 0.0303 (9) | −0.0045 (7) | 0.0012 (7) | 0.0000 (7) |
| C3 | 0.0259 (9) | 0.0405 (10) | 0.0346 (10) | −0.0009 (8) | 0.0040 (7) | 0.0058 (8) |
| C4 | 0.0355 (10) | 0.0352 (10) | 0.0295 (9) | 0.0068 (8) | 0.0098 (7) | 0.0040 (8) |
| C5 | 0.0415 (10) | 0.0307 (9) | 0.0266 (9) | 0.0020 (8) | 0.0039 (8) | −0.0030 (7) |
| C6 | 0.0315 (9) | 0.0287 (9) | 0.0293 (9) | −0.0085 (7) | 0.0084 (7) | −0.0066 (7) |
| C7 | 0.0233 (8) | 0.0270 (8) | 0.0217 (8) | −0.0053 (7) | 0.0000 (6) | −0.0029 (6) |
| C8 | 0.0276 (8) | 0.0240 (8) | 0.0306 (9) | −0.0019 (7) | 0.0003 (7) | −0.0022 (7) |
| C9 | 0.0340 (9) | 0.0310 (9) | 0.0315 (9) | −0.0079 (8) | 0.0042 (7) | 0.0035 (8) |
| C10 | 0.0275 (9) | 0.0421 (11) | 0.0343 (10) | −0.0065 (8) | 0.0088 (7) | −0.0059 (8) |
| C11 | 0.0292 (9) | 0.0331 (10) | 0.0438 (11) | 0.0038 (8) | 0.0020 (8) | −0.0049 (8) |
| C12 | 0.0329 (9) | 0.0251 (9) | 0.0323 (9) | −0.0015 (7) | −0.0008 (7) | 0.0022 (7) |
| S1—O1 | 1.4249 (13) | C5—H5 | 0.95 |
| S1—O2 | 1.4268 (13) | C6—C7 | 1.502 (2) |
| S1—N1 | 1.6073 (15) | C6—H6A | 0.99 |
| S1—C1 | 1.7787 (18) | C6—H6B | 0.99 |
| N1—C6 | 1.469 (2) | C7—C8 | 1.376 (2) |
| N1—H1 | 0.82 (2) | C7—C12 | 1.387 (3) |
| N2—C1 | 1.327 (2) | C8—C9 | 1.385 (3) |
| N2—C5 | 1.330 (2) | C8—H8 | 0.95 |
| C1—C2 | 1.379 (2) | C9—C10 | 1.371 (3) |
| C2—C3 | 1.381 (3) | C9—H9 | 0.95 |
| C2—H2 | 0.95 | C10—C11 | 1.377 (3) |
| C3—C4 | 1.373 (3) | C10—H10 | 0.95 |
| C3—H3 | 0.95 | C11—C12 | 1.376 (3) |
| C4—C5 | 1.379 (3) | C11—H11 | 0.95 |
| C4—H4 | 0.95 | C12—H12 | 0.95 |
| O1—S1—O2 | 119.76 (8) | N1—C6—C7 | 110.77 (14) |
| O1—S1—N1 | 107.91 (8) | N1—C6—H6A | 109.5 |
| O2—S1—N1 | 107.23 (8) | C7—C6—H6A | 109.5 |
| O1—S1—C1 | 106.59 (8) | N1—C6—H6B | 109.5 |
| O2—S1—C1 | 107.16 (8) | C7—C6—H6B | 109.5 |
| N1—S1—C1 | 107.67 (8) | H6A—C6—H6B | 108.1 |
| C6—N1—S1 | 119.95 (12) | C8—C7—C12 | 118.78 (16) |
| C6—N1—H1 | 116.0 (15) | C8—C7—C6 | 120.01 (16) |
| S1—N1—H1 | 111.2 (15) | C12—C7—C6 | 121.20 (16) |
| C1—N2—C5 | 116.37 (15) | C7—C8—C9 | 120.72 (17) |
| N2—C1—C2 | 125.17 (17) | C7—C8—H8 | 119.6 |
| N2—C1—S1 | 114.46 (13) | C9—C8—H8 | 119.6 |
| C2—C1—S1 | 120.36 (14) | C10—C9—C8 | 119.98 (17) |
| C1—C2—C3 | 117.12 (17) | C10—C9—H9 | 120.0 |
| C1—C2—H2 | 121.4 | C8—C9—H9 | 120.0 |
| C3—C2—H2 | 121.4 | C9—C10—C11 | 119.85 (18) |
| C4—C3—C2 | 119.00 (18) | C9—C10—H10 | 120.1 |
| C4—C3—H3 | 120.5 | C11—C10—H10 | 120.1 |
| C2—C3—H3 | 120.5 | C12—C11—C10 | 120.18 (18) |
| C3—C4—C5 | 119.10 (18) | C12—C11—H11 | 119.9 |
| C3—C4—H4 | 120.5 | C10—C11—H11 | 119.9 |
| C5—C4—H4 | 120.5 | C11—C12—C7 | 120.48 (17) |
| N2—C5—C4 | 123.24 (17) | C11—C12—H12 | 119.8 |
| N2—C5—H5 | 118.4 | C7—C12—H12 | 119.8 |
| C4—C5—H5 | 118.4 | ||
| O1—S1—N1—C6 | 42.85 (16) | C2—C3—C4—C5 | 0.3 (3) |
| O2—S1—N1—C6 | 173.12 (13) | C1—N2—C5—C4 | −0.4 (3) |
| C1—S1—N1—C6 | −71.85 (15) | C3—C4—C5—N2 | −0.1 (3) |
| C5—N2—C1—C2 | 0.8 (3) | S1—N1—C6—C7 | −159.20 (13) |
| C5—N2—C1—S1 | −178.54 (13) | N1—C6—C7—C8 | −126.83 (17) |
| O1—S1—C1—N2 | −34.71 (14) | N1—C6—C7—C12 | 54.6 (2) |
| O2—S1—C1—N2 | −164.06 (12) | C12—C7—C8—C9 | 0.2 (3) |
| N1—S1—C1—N2 | 80.87 (14) | C6—C7—C8—C9 | −178.38 (16) |
| O1—S1—C1—C2 | 145.94 (14) | C7—C8—C9—C10 | −0.9 (3) |
| O2—S1—C1—C2 | 16.58 (16) | C8—C9—C10—C11 | 0.6 (3) |
| N1—S1—C1—C2 | −98.49 (15) | C9—C10—C11—C12 | 0.3 (3) |
| N2—C1—C2—C3 | −0.6 (3) | C10—C11—C12—C7 | −1.0 (3) |
| S1—C1—C2—C3 | 178.71 (13) | C8—C7—C12—C11 | 0.7 (3) |
| C1—C2—C3—C4 | 0.0 (3) | C6—C7—C12—C11 | 179.29 (17) |
| H··· | ||||
| N1—H1···N2i | 0.82 (2) | 2.49 (2) | 3.264 (2) | 157 (2) |
| N1—H1···O1i | 0.82 (2) | 2.50 (2) | 3.111 (2) | 132 (2) |
| C4—H4···O1ii | 0.95 | 2.52 | 3.406 (2) | 154 |
| C5—H5···O2iii | 0.95 | 2.51 | 3.121 (2) | 122 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯N2i | 0.82 (2) | 2.49 (2) | 3.264 (2) | 157 (2) |
| N1—H1⋯O1i | 0.82 (2) | 2.50 (2) | 3.111 (2) | 132 (2) |
| C4—H4⋯O1ii | 0.95 | 2.52 | 3.406 (2) | 154 |
| C5—H5⋯O2iii | 0.95 | 2.51 | 3.121 (2) | 122 |
Symmetry codes: (i) ; (ii) ; (iii) .