Literature DB >> 21583251

3,3'-[(tert-Butoxy-carbon-yl)aza-nedi-yl]dipropanoic acid.

Yuan Tao, Yu-Feng Liang, Xiao-Qiang Guo, Zhi-Hua Mao, Qing-Rong Qi.   

Abstract

The title compound, C(11)H(19)NO(6), is an important inter-mediate for the synthesis of cephalosporin derivatives. The N atom is in a planar configuration. In the crystal, mol-ecules are linked into zigzag layers parallel to (100) by O-H⋯O n class="Chemical">hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583251      PMCID: PMC2969698          DOI: 10.1107/S1600536809018911

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The condensation of the title compound with cephalosporin may improve the pharmacokinetics, see: Sakagami et al. (1990 ▶, 1991 ▶); Uhrich & Frechet (1992 ▶).

Experimental

Crystal data

C11H19NO6 M = 261.27 Orthorhombic, a = 10.632 (2) Å b = 14.559 (3) Å c = 18.257 (4) Å V = 2826.1 (11) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 292 K 0.60 × 0.50 × 0.44 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 2979 measured reflections 2601 independent reflections 1050 reflections with I > 2σ(I) R int = 0.008 3 standard reflections every 200 reflections intensity decay: 1.3%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.171 S = 1.09 2601 reflections 175 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.25 e Å−3 Data collection: DIFRAC (Gabe & White, 1993 ▶); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809018911/ci2799sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018911/ci2799Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H19NO6F(000) = 1120
Mr = 261.27Dx = 1.228 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 20 reflections
a = 10.632 (2) Åθ = 5.7–6.8°
b = 14.559 (3) ŵ = 0.10 mm1
c = 18.257 (4) ÅT = 292 K
V = 2826.1 (11) Å3Block, colourless
Z = 80.60 × 0.50 × 0.44 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.008
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 2.2°
graphiteh = −1→12
ω/2–θ scansk = −3→17
2979 measured reflectionsl = −10→22
2601 independent reflections3 standard reflections every 200 reflections
1050 reflections with I > 2σ(I) intensity decay: 1.3%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.171w = 1/[σ2(Fo2) + (0.0701P)2] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2601 reflectionsΔρmax = 0.22 e Å3
175 parametersΔρmin = −0.25 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0127 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1690 (2)0.18631 (13)0.36711 (10)0.0709 (7)
O20.0153 (3)0.10681 (16)0.31021 (11)0.0841 (8)
O30.0720 (3)−0.04162 (19)0.08342 (15)0.0995 (10)
H3O0.031 (4)−0.058 (3)0.037 (3)0.129 (16)*
O40.0484 (3)0.09467 (16)0.03663 (14)0.1078 (11)
O50.1228 (3)0.49187 (18)0.26626 (13)0.0833 (8)
H5O0.066 (5)0.526 (3)0.238 (2)0.137 (18)*
O60.1031 (3)0.39281 (16)0.17583 (15)0.1142 (11)
N10.1433 (3)0.20065 (16)0.24663 (13)0.0669 (8)
C10.2392 (4)0.1974 (2)0.48679 (17)0.0898 (12)
H1A0.32230.18490.46870.135*
H1B0.23280.17720.53670.135*
H1C0.22330.26220.48430.135*
C20.1697 (4)0.0451 (2)0.4391 (2)0.0981 (14)
H2A0.10550.01460.41120.147*
H2B0.17000.02170.48820.147*
H2C0.25010.03420.41690.147*
C30.0128 (4)0.1701 (3)0.4649 (2)0.1067 (14)
H3A−0.00260.23430.45710.160*
H3B0.00380.15600.51600.160*
H3C−0.04670.13470.43710.160*
C40.1436 (4)0.1469 (2)0.44047 (16)0.0686 (10)
C50.1046 (4)0.1604 (2)0.30812 (18)0.0623 (9)
C60.0904 (4)0.1711 (2)0.17744 (16)0.0688 (10)
H6A0.10420.21850.14090.083*
H6B0.00030.16290.18290.083*
C70.1484 (3)0.0821 (2)0.15127 (17)0.0747 (11)
H7A0.23650.09220.14000.090*
H7B0.14370.03680.19020.090*
C80.0838 (4)0.0459 (3)0.08533 (19)0.0719 (10)
C90.2554 (4)0.2605 (2)0.24626 (18)0.0762 (10)
H9A0.28440.26750.19620.091*
H9B0.32200.23080.27380.091*
C100.2318 (4)0.3548 (2)0.27853 (18)0.0762 (11)
H10A0.19700.34750.32730.091*
H10B0.31160.38650.28330.091*
C110.1451 (4)0.4125 (2)0.2344 (2)0.0732 (11)
U11U22U33U12U13U23
O10.0897 (19)0.0642 (13)0.0588 (12)−0.0127 (13)−0.0146 (12)−0.0004 (10)
O20.097 (2)0.0806 (16)0.0750 (16)−0.0276 (16)−0.0109 (14)−0.0061 (12)
O30.152 (3)0.0724 (19)0.0737 (17)0.0156 (18)−0.0244 (17)−0.0096 (14)
O40.164 (3)0.0759 (17)0.0831 (17)0.0102 (17)−0.0439 (18)−0.0010 (15)
O50.094 (2)0.0750 (17)0.0803 (16)0.0181 (15)−0.0104 (14)0.0071 (14)
O60.153 (3)0.0836 (18)0.106 (2)0.0274 (18)−0.053 (2)−0.0026 (16)
N10.078 (2)0.0626 (15)0.0595 (16)−0.0032 (16)−0.0056 (15)0.0027 (14)
C10.094 (3)0.103 (3)0.073 (2)0.004 (2)−0.017 (2)−0.012 (2)
C20.132 (4)0.072 (3)0.090 (3)0.002 (3)−0.012 (3)0.015 (2)
C30.091 (4)0.132 (3)0.097 (3)0.009 (3)0.013 (3)−0.017 (3)
C40.080 (3)0.069 (2)0.0572 (18)0.002 (2)−0.0009 (18)−0.0036 (17)
C50.066 (3)0.054 (2)0.067 (2)−0.0066 (19)−0.0100 (19)−0.0035 (17)
C60.080 (3)0.065 (2)0.060 (2)0.011 (2)−0.0078 (17)−0.0011 (16)
C70.073 (3)0.082 (2)0.069 (2)0.014 (2)−0.0123 (18)−0.0100 (18)
C80.081 (3)0.071 (3)0.064 (2)0.025 (2)−0.0029 (19)−0.009 (2)
C90.069 (3)0.075 (2)0.084 (2)0.005 (2)−0.0019 (19)0.014 (2)
C100.078 (3)0.064 (2)0.087 (2)−0.010 (2)−0.023 (2)0.0155 (17)
C110.087 (3)0.062 (2)0.071 (2)−0.006 (2)−0.011 (2)0.0116 (19)
O1—C51.331 (4)C2—H2B0.96
O1—C41.482 (3)C2—H2C0.96
O2—C51.229 (4)C3—C41.499 (5)
O3—C81.281 (4)C3—H3A0.96
O3—H3O0.98 (5)C3—H3B0.96
O4—C81.199 (4)C3—H3C0.96
O5—C111.315 (4)C6—C71.513 (4)
O5—H5O0.94 (5)C6—H6A0.97
O6—C111.193 (4)C6—H6B0.97
N1—C51.331 (4)C7—C81.482 (5)
N1—C61.448 (4)C7—H7A0.97
N1—C91.477 (4)C7—H7B0.97
C1—C41.514 (5)C9—C101.515 (4)
C1—H1A0.96C9—H9A0.97
C1—H1B0.96C9—H9B0.97
C1—H1C0.96C10—C111.486 (5)
C2—C41.508 (4)C10—H10A0.97
C2—H2A0.96C10—H10B0.97
C5—O1—C4121.8 (3)O1—C5—N1113.5 (3)
C8—O3—H3O108 (2)N1—C6—C7111.8 (3)
C11—O5—H5O110 (3)N1—C6—H6A109.3
C5—N1—C6119.0 (3)C7—C6—H6A109.3
C5—N1—C9120.9 (3)N1—C6—H6B109.3
C6—N1—C9119.0 (3)C7—C6—H6B109.3
C4—C1—H1A109.5H6A—C6—H6B107.9
C4—C1—H1B109.5C8—C7—C6111.8 (3)
H1A—C1—H1B109.5C8—C7—H7A109.2
C4—C1—H1C109.5C6—C7—H7A109.2
H1A—C1—H1C109.5C8—C7—H7B109.2
H1B—C1—H1C109.5C6—C7—H7B109.2
C4—C2—H2A109.5H7A—C7—H7B107.9
C4—C2—H2B109.5O4—C8—O3122.6 (3)
H2A—C2—H2B109.5O4—C8—C7122.5 (4)
C4—C2—H2C109.5O3—C8—C7114.9 (3)
H2A—C2—H2C109.5N1—C9—C10113.5 (3)
H2B—C2—H2C109.5N1—C9—H9A108.9
C4—C3—H3A109.5C10—C9—H9A108.9
C4—C3—H3B109.5N1—C9—H9B108.9
H3A—C3—H3B109.5C10—C9—H9B108.9
C4—C3—H3C109.5H9A—C9—H9B107.7
H3A—C3—H3C109.5C11—C10—C9113.9 (3)
H3B—C3—H3C109.5C11—C10—H10A108.8
O1—C4—C3110.5 (3)C9—C10—H10A108.8
O1—C4—C2109.4 (3)C11—C10—H10B108.8
C3—C4—C2113.4 (3)C9—C10—H10B108.8
O1—C4—C1101.2 (3)H10A—C10—H10B107.7
C3—C4—C1110.4 (3)O6—C11—O5122.7 (3)
C2—C4—C1111.3 (3)O6—C11—C10125.6 (3)
O2—C5—O1123.5 (3)O5—C11—C10111.6 (3)
O2—C5—N1123.0 (3)
C5—O1—C4—C3−63.2 (4)C9—N1—C6—C789.6 (3)
C5—O1—C4—C262.3 (4)N1—C6—C7—C8173.1 (3)
C5—O1—C4—C1179.9 (3)C6—C7—C8—O439.8 (5)
C4—O1—C5—O24.4 (5)C6—C7—C8—O3−142.1 (3)
C4—O1—C5—N1−177.7 (3)C5—N1—C9—C10−76.4 (4)
C6—N1—C5—O2−8.8 (5)C6—N1—C9—C10115.9 (3)
C9—N1—C5—O2−176.5 (3)N1—C9—C10—C11−67.1 (4)
C6—N1—C5—O1173.3 (3)C9—C10—C11—O6−5.7 (6)
C9—N1—C5—O15.6 (4)C9—C10—C11—O5177.0 (3)
C5—N1—C6—C7−78.3 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O4i0.98 (5)1.68 (5)2.653 (4)174 (4)
O5—H5O···O2ii0.94 (5)1.70 (5)2.628 (3)168 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O4i0.98 (5)1.68 (5)2.653 (4)174 (4)
O5—H5O⋯O2ii0.94 (5)1.70 (5)2.628 (3)168 (4)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Synthesis and oral activity of ME1207, a new orally active cephalosporin.

Authors:  K Sakagami; K Atsumi; A Tamura; T Yoshida; K Nishihata; S Fukatsu
Journal:  J Antibiot (Tokyo)       Date:  1990-08       Impact factor: 2.649

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and oral activity of pivaloyloxymethyl 7-[(Z)-2-(2-aminothiazol-4-yl)-2-methoxyiminoacetamido]-3(Z)- (4-methylthiazol-5-yl)vinyl-3-cephem-4-carboxylate (ME1207) and its related compound.

Authors:  K Sakagami; K Atsumi; Y Yamamoto; A Tamura; T Yoshida; K Nishihata; S Fukatsu
Journal:  Chem Pharm Bull (Tokyo)       Date:  1991-09       Impact factor: 1.645

  3 in total

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