Literature DB >> 21583200

(2S)-Methyl 2-(4-chloro-benzene-sulfon-amido)-4-(methyl-sulfan-yl)butanoate.

Tayyaba Syed, Shahid Hameed, Peter G Jones.   

Abstract

The enanti-omerically pure title compound, C(12)H(16)ClNO(4)S(2), contains a pyramidal N atom with an S-N bond length of 1.6306 (15) Å. Mol-ecules are linked to form chains parallel to the a axis by classical N-H⋯O hydrogen bonding involving a sulfonyl O atom, supported by three weak C-H⋯X inter-actions. (X = S, O).

Entities:  

Year:  2009        PMID: 21583200      PMCID: PMC2969768          DOI: 10.1107/S1600536809018297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of esters in industry and as inter­mediates in the synthesis of heterocycles, see: Akhtar et al. (2007 ▶, 2008 ▶); Kashif et al. (2008 ▶); Serwar et al. (2009 ▶); Syed et al. (2009 ▶).

Experimental

Crystal data

C12H16ClNO4S2 M = 337.83 Orthorhombic, a = 5.1814 (3) Å b = 12.6089 (8) Å c = 23.2137 (13) Å V = 1516.59 (16) Å3 Z = 4 Cu Kα radiation μ = 4.92 mm−1 T = 100 K 0.20 × 0.12 × 0.06 mm

Data collection

Oxford Diffraction Xcalibur Nova A diffractometer Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2008 ▶) T min = 0.548, T max = 1.000 (expected range = 0.408–0.744) 14469 measured reflections 3093 independent reflections 3027 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.062 S = 1.04 3093 reflections 187 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983 ▶), 1250 Friedel pairs Flack parameter: 0.005 (12) Data collection: CrysAlis Pro (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Siemens, 1994 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809018297/bt2959sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018297/bt2959Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16ClNO4S2Dx = 1.480 Mg m3
Mr = 337.83Melting point = 331–333 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
a = 5.1814 (3) ÅCell parameters from 10903 reflections
b = 12.6089 (8) Åθ = 3.5–75.6°
c = 23.2137 (13) ŵ = 4.92 mm1
V = 1516.59 (16) Å3T = 100 K
Z = 4Tablet, colourless
F(000) = 7040.20 × 0.12 × 0.06 mm
Oxford Diffraction Xcalibur Nova A diffractometer3093 independent reflections
Radiation source: Nova (Cu) X-ray Source3027 reflections with I > 2σ(I)
mirrorRint = 0.033
Detector resolution: 10.3543 pixels mm-1θmax = 75.7°, θmin = 3.8°
ω scansh = −6→5
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2008)k = −15→15
Tmin = 0.548, Tmax = 1.000l = −29→27
14469 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.062w = 1/[σ2(Fo2) + (0.0339P)2 + 0.6444P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
3093 reflectionsΔρmax = 0.20 e Å3
187 parametersΔρmin = −0.35 e Å3
0 restraintsAbsolute structure: Flack (1983), 1250 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.005 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6060 (3)0.70856 (13)0.30125 (7)0.0157 (3)
C20.7658 (3)0.64578 (13)0.25767 (7)0.0149 (3)
H20.95290.65270.26760.018*
C30.7198 (3)0.69178 (13)0.19720 (7)0.0157 (3)
H3A0.53990.67700.18530.019*
H3B0.74270.76970.19840.019*
C40.9040 (3)0.64498 (13)0.15292 (7)0.0175 (3)
H4A0.87240.56770.15010.021*
H4B1.08340.65520.16650.021*
C50.5616 (4)0.65296 (18)0.06022 (8)0.0279 (4)
H5A0.55650.57610.06620.042*
H5B0.53340.66870.01940.042*
H5C0.42610.68680.08330.042*
C60.5679 (4)0.87023 (14)0.34955 (8)0.0267 (4)
H6A0.39490.87910.33320.040*
H6B0.65290.93950.35220.040*
H6C0.55410.83900.38810.040*
C110.7949 (3)0.48637 (13)0.37042 (7)0.0166 (3)
C120.9359 (3)0.56678 (13)0.39648 (7)0.0194 (3)
H121.08010.59720.37740.023*
C130.8635 (4)0.60215 (14)0.45083 (8)0.0230 (3)
H130.95760.65700.46940.028*
C140.6511 (4)0.55597 (14)0.47751 (7)0.0225 (3)
C150.5128 (4)0.47418 (15)0.45226 (8)0.0224 (4)
H150.37160.44250.47190.027*
C160.5837 (3)0.43950 (13)0.39798 (7)0.0192 (3)
H160.48980.38430.37960.023*
O10.4034 (3)0.67950 (10)0.32058 (5)0.0225 (3)
O20.7177 (2)0.80112 (10)0.31298 (5)0.0202 (3)
O31.1274 (2)0.47165 (9)0.28709 (5)0.0187 (2)
O40.7538 (2)0.34783 (10)0.28792 (5)0.0199 (3)
S10.87182 (9)0.70331 (3)0.081959 (17)0.02100 (10)
S20.86006 (8)0.45109 (3)0.298219 (16)0.01470 (9)
Cl0.55423 (10)0.60320 (4)0.54465 (2)0.03195 (12)
N0.6935 (3)0.53293 (11)0.25852 (6)0.0151 (3)
H010.540 (6)0.521 (2)0.2616 (12)0.041 (7)*
U11U22U33U12U13U23
C10.0189 (8)0.0141 (7)0.0140 (7)0.0002 (7)−0.0010 (7)0.0023 (6)
C20.0149 (7)0.0120 (7)0.0176 (8)−0.0009 (6)−0.0006 (6)−0.0011 (6)
C30.0160 (7)0.0143 (7)0.0168 (8)0.0003 (6)−0.0005 (6)0.0005 (6)
C40.0157 (8)0.0201 (8)0.0168 (7)0.0025 (6)0.0004 (6)0.0016 (6)
C50.0225 (9)0.0396 (10)0.0216 (9)0.0020 (8)−0.0013 (7)0.0023 (8)
C60.0365 (11)0.0214 (8)0.0223 (8)0.0063 (8)0.0019 (8)−0.0074 (7)
C110.0165 (8)0.0140 (7)0.0192 (8)0.0022 (6)−0.0011 (6)0.0035 (6)
C120.0187 (8)0.0184 (8)0.0212 (8)−0.0017 (6)0.0012 (6)0.0032 (6)
C130.0266 (9)0.0195 (8)0.0228 (8)−0.0008 (8)−0.0022 (8)−0.0008 (7)
C140.0259 (9)0.0222 (8)0.0194 (8)0.0043 (8)0.0005 (7)0.0026 (6)
C150.0211 (8)0.0249 (8)0.0211 (8)−0.0006 (7)0.0031 (7)0.0068 (7)
C160.0189 (8)0.0168 (8)0.0219 (8)−0.0030 (7)−0.0019 (7)0.0025 (6)
O10.0205 (7)0.0197 (6)0.0272 (6)−0.0006 (5)0.0076 (5)−0.0008 (5)
O20.0254 (6)0.0149 (6)0.0204 (6)−0.0018 (5)0.0014 (5)−0.0049 (5)
O30.0154 (5)0.0161 (5)0.0246 (6)0.0007 (5)0.0006 (5)−0.0021 (4)
O40.0214 (6)0.0126 (6)0.0256 (6)−0.0028 (5)0.0000 (5)−0.0004 (5)
S10.01868 (19)0.0276 (2)0.01674 (19)0.00114 (18)0.00273 (16)0.00482 (15)
S20.01470 (18)0.01144 (17)0.01797 (18)−0.00017 (15)0.00043 (15)0.00026 (13)
Cl0.0416 (3)0.0336 (2)0.0206 (2)0.0050 (2)0.00561 (18)−0.00285 (18)
N0.0140 (6)0.0128 (6)0.0186 (7)−0.0027 (5)−0.0002 (5)0.0000 (5)
C1—O11.199 (2)O4—S21.4337 (13)
C1—O21.331 (2)S2—N1.6306 (15)
C1—C21.528 (2)C2—H21.0000
C2—N1.472 (2)C3—H3A0.9900
C2—C31.538 (2)C3—H3B0.9900
C3—C41.522 (2)C4—H4A0.9900
C4—S11.8117 (17)C4—H4B0.9900
C5—S11.800 (2)C5—H5A0.9800
C6—O21.443 (2)C5—H5B0.9800
C11—C121.388 (2)C5—H5C0.9800
C11—C161.398 (2)C6—H6A0.9800
C11—S21.7667 (18)C6—H6B0.9800
C12—C131.390 (2)C6—H6C0.9800
C13—C141.391 (3)C12—H120.9500
C14—C151.386 (3)C13—H130.9500
C14—Cl1.7422 (18)C15—H150.9500
C15—C161.384 (2)C16—H160.9500
O3—S21.4327 (13)N—H010.81 (3)
O1—C1—O2124.89 (16)C2—C3—H3A109.2
O1—C1—C2124.31 (15)C4—C3—H3B109.2
O2—C1—C2110.75 (14)C2—C3—H3B109.2
N—C2—C1110.74 (13)H3A—C3—H3B107.9
N—C2—C3109.73 (13)C3—C4—H4A108.9
C1—C2—C3108.97 (13)S1—C4—H4A108.9
C4—C3—C2111.92 (14)C3—C4—H4B108.9
C3—C4—S1113.52 (11)S1—C4—H4B108.9
C12—C11—C16121.41 (16)H4A—C4—H4B107.7
C12—C11—S2119.77 (13)S1—C5—H5A109.5
C16—C11—S2118.50 (13)S1—C5—H5B109.5
C11—C12—C13119.20 (17)H5A—C5—H5B109.5
C12—C13—C14118.92 (17)S1—C5—H5C109.5
C15—C14—C13122.17 (17)H5A—C5—H5C109.5
C15—C14—Cl118.93 (14)H5B—C5—H5C109.5
C13—C14—Cl118.90 (14)O2—C6—H6A109.5
C16—C15—C14118.88 (17)O2—C6—H6B109.5
C15—C16—C11119.40 (16)H6A—C6—H6B109.5
C1—O2—C6114.59 (14)O2—C6—H6C109.5
C5—S1—C4101.18 (9)H6A—C6—H6C109.5
O3—S2—O4120.36 (7)H6B—C6—H6C109.5
O3—S2—N107.18 (7)C11—C12—H12120.4
O4—S2—N106.09 (7)C13—C12—H12120.4
O3—S2—C11108.08 (8)C12—C13—H13120.5
O4—S2—C11108.27 (8)C14—C13—H13120.5
N—S2—C11106.00 (7)C16—C15—H15120.6
C2—N—S2118.99 (11)C14—C15—H15120.6
N—C2—H2109.1C15—C16—H16120.3
C1—C2—H2109.1C11—C16—H16120.3
C3—C2—H2109.1C2—N—H01115.6 (19)
C4—C3—H3A109.2S2—N—H01110.5 (19)
O1—C1—C2—N−20.6 (2)S2—C11—C16—C15−173.17 (13)
O2—C1—C2—N161.73 (13)O1—C1—O2—C6−3.3 (2)
O1—C1—C2—C3100.19 (18)C2—C1—O2—C6174.33 (14)
O2—C1—C2—C3−77.48 (16)C3—C4—S1—C5−69.77 (14)
N—C2—C3—C4−67.63 (17)C12—C11—S2—O329.75 (15)
C1—C2—C3—C4170.97 (14)C16—C11—S2—O3−156.70 (13)
C2—C3—C4—S1−176.06 (11)C12—C11—S2—O4161.63 (13)
C16—C11—C12—C13−0.7 (3)C16—C11—S2—O4−24.82 (15)
S2—C11—C12—C13172.62 (13)C12—C11—S2—N−84.90 (15)
C11—C12—C13—C14−0.1 (3)C16—C11—S2—N88.66 (14)
C12—C13—C14—C151.5 (3)C1—C2—N—S2−94.83 (15)
C12—C13—C14—Cl−177.99 (13)C3—C2—N—S2144.83 (12)
C13—C14—C15—C16−2.0 (3)O3—S2—N—C2−47.30 (14)
Cl—C14—C15—C16177.52 (14)O4—S2—N—C2−177.08 (12)
C14—C15—C16—C111.1 (3)C11—S2—N—C267.96 (14)
C12—C11—C16—C150.3 (3)
D—H···AD—HH···AD···AD—H···A
N—H01···O3i0.81 (3)2.30 (3)3.1048 (18)169 (3)
C2—H2···O1ii1.002.663.637 (2)166
C12—H12···O1ii0.952.373.315 (2)173
C3—H3B···O3iii0.992.663.635 (2)170
C5—H5B···S1iv0.982.973.892 (2)157
C5—H5C···S1i0.982.883.665 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H01⋯O3i0.81 (3)2.30 (3)3.1048 (18)169 (3)
C2—H2⋯O1ii1.002.663.637 (2)166
C12—H12⋯O1ii0.952.373.315 (2)173
C3—H3B⋯O3iii0.992.663.635 (2)170
C5—H5B⋯S1iv0.982.973.892 (2)157
C5—H5C⋯S1i0.982.883.665 (2)138

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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