Literature DB >> 21583182

5-Benzyl-2-phenyl-6,8-dihydro-5H-1,2,4-triazolo[3,4-c][1,4]oxazin-2-ium hexa-fluoridophosphate.

Yumin Huang, Siping Wei, Zhen Wang, Zhihua Mao, Xiaoyu Su.   

Abstract

The title compound, C(18)H(18)N(3)O(+)·PF(6) (-), is a chiral bicyclic 1,2,4-triazolium salt which contains four rings, viz. a triazolium, a morpholine and two phenyl rings. Analysis of bond lengths shows that the N-CH-N group in the triazolium ring conforms to a typical three-center/four-electron bond (also known as the Pimentel-Rundle three-center model). The structure is completed by a disordered PF(6) (-) counter-ion [occupancies of F atoms 0.678 (8):0.322 (8)], which inter-acts with the main mol-ecule through weak inter-molecular P-F⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583182      PMCID: PMC2969544          DOI: 10.1107/S1600536809018005

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of different C—C bond-formation reactions, see: Fisher et al. (2006 ▶); Kerr et al. (2002 ▶); Knight & Leeper (1998 ▶); Readde Alaniz & Rovis (2005 ▶); Ma et al. (2008 ▶).

Experimental

Crystal data

C18H18N3OPF6 M = 437.32 Monoclinic, a = 11.4054 (13) Å b = 8.1243 (9) Å c = 11.8593 (14) Å β = 118.678 (2)° V = 964.09 (19) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 297 K 0.53 × 0.42 × 0.32 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.89, T max = 0.93 5505 measured reflections 3406 independent reflections 2984 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.114 S = 1.11 3406 reflections 318 parameters 31 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 1368 Friedel pairs Flack parameter: 0.01 (10) Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809018005/bg2257sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018005/bg2257Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18N3O+·F6PF(000) = 448
Mr = 437.32Dx = 1.506 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3172 reflections
a = 11.4054 (13) Åθ = 3.1–26.0°
b = 8.1243 (9) ŵ = 0.21 mm1
c = 11.8593 (14) ÅT = 297 K
β = 118.678 (2)°Parallelepiped, colourless
V = 964.09 (19) Å30.53 × 0.42 × 0.32 mm
Z = 2
Bruker SMART CCD area-detector diffractometer3406 independent reflections
Radiation source: fine-focus sealed tube2984 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 26.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→13
Tmin = 0.89, Tmax = 0.93k = −9→10
5505 measured reflectionsl = −12→14
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.075P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.114(Δ/σ)max = 0.009
S = 1.11Δρmax = 0.20 e Å3
3406 reflectionsΔρmin = −0.20 e Å3
318 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
31 restraintsExtinction coefficient: 0.019 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1368 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.01 (10)
Experimental. Even if the Flack parameter coming out of refinement appears quite trustable, the fact that the heaviest atomic species in the structure is P could suggest that the absolute structure determination could be thought as dubious. However, because the stereogenic carbon does not directly participate in the cyclocondensation, there is little risk for the racemization of the stereogenic carbon in this reaction. (Knight, R. L. & Leeper, F. J. (1998) J. Chem. Soc., Perkin Trans. 1, 1891–1893.) From starting material (S)-2-amino-3-phenylpropan-1-ol, it give (S)-5-benzyl-2-phenyl-6,8-dihydro-5H- [1,2,4]triazolo[3,4-c][1,4]oxazin-2-ium hexafluorophosphate as product, whose absolute configuration (s) is consistent with the absolute structure characterized by X-ray structure analysis.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.79225 (6)0.03833 (8)0.45453 (6)0.0488 (2)
O10.67186 (18)0.5581 (3)0.70365 (16)0.0669 (5)
N10.69585 (16)0.5547 (3)0.34299 (15)0.0428 (4)
N20.59091 (18)0.5715 (3)0.36766 (18)0.0514 (5)
N30.77918 (16)0.5257 (3)0.54549 (15)0.0422 (4)
C10.5666 (3)0.6481 (4)0.1230 (3)0.0637 (7)
H1A0.51310.70930.14690.076*
C20.5404 (3)0.6440 (5)−0.0031 (3)0.0788 (9)
H2B0.46750.7013−0.06540.095*
C30.6212 (3)0.5557 (5)−0.0376 (3)0.0707 (8)
H3A0.60230.5529−0.12310.085*
C40.7283 (3)0.4729 (5)0.0528 (3)0.0734 (9)
H4A0.78410.41620.02930.088*
C50.7556 (3)0.4719 (4)0.1800 (3)0.0636 (7)
H5A0.82790.41320.24180.076*
C60.6733 (2)0.5598 (3)0.2126 (2)0.0464 (5)
C70.8076 (2)0.5279 (4)0.44951 (19)0.0435 (5)
H7A0.89170.51320.45640.052*
C80.6451 (2)0.5535 (4)0.4908 (2)0.0486 (5)
C90.5763 (3)0.5573 (6)0.5721 (2)0.0713 (9)
H9A0.52090.65500.55190.086*
H9B0.51900.46160.55330.086*
C100.7696 (3)0.4335 (4)0.7317 (2)0.0579 (7)
H10A0.72610.33130.69080.069*
H10B0.81870.41520.82370.069*
C110.8654 (2)0.4849 (3)0.6834 (2)0.0447 (5)
H11A0.92290.39140.69040.054*
C120.9534 (3)0.6333 (3)0.7548 (2)0.0531 (6)
H12A1.00500.66670.71330.064*
H12B0.89710.72500.75100.064*
C131.0474 (2)0.5901 (3)0.8942 (2)0.0514 (6)
C141.1674 (3)0.5140 (4)0.9300 (3)0.0677 (8)
H14A1.19370.49040.86860.081*
C151.2500 (3)0.4720 (5)1.0580 (4)0.0796 (9)
H15A1.33210.42251.08190.095*
C161.2119 (3)0.5024 (4)1.1490 (3)0.0794 (10)
H16A1.26740.47261.23410.095*
C171.0925 (3)0.5766 (4)1.1146 (3)0.0710 (8)
H17A1.06620.59731.17640.085*
C181.0103 (3)0.6211 (4)0.9885 (3)0.0590 (7)
H18A0.92920.67260.96600.071*
F10.7113 (5)0.1769 (5)0.4784 (7)0.105 (2)0.678 (8)
F20.7470 (6)−0.0824 (7)0.5298 (6)0.115 (2)0.678 (8)
F30.8763 (5)−0.0945 (6)0.4304 (8)0.118 (3)0.678 (8)
F40.8458 (8)0.1611 (7)0.3921 (7)0.126 (3)0.678 (8)
F50.9187 (4)0.0816 (12)0.5876 (4)0.132 (3)0.678 (8)
F60.6692 (5)−0.0133 (10)0.3319 (4)0.128 (2)0.678 (8)
F1'0.767 (2)0.125 (3)0.5475 (17)0.214 (11)0.322 (8)
F2'0.6898 (13)−0.0908 (11)0.433 (2)0.142 (7)0.322 (8)
F3'0.811 (3)−0.036 (4)0.350 (2)0.280 (14)0.322 (8)
F4'0.8949 (12)0.1741 (13)0.476 (2)0.154 (9)0.322 (8)
F5'0.9061 (10)−0.069 (2)0.542 (2)0.174 (9)0.322 (8)
F6'0.6823 (13)0.138 (2)0.3481 (18)0.192 (8)0.322 (8)
U11U22U33U12U13U23
P10.0462 (3)0.0449 (3)0.0583 (4)−0.0032 (3)0.0276 (3)−0.0032 (3)
O10.0668 (10)0.0884 (15)0.0578 (10)0.0000 (12)0.0398 (9)−0.0050 (11)
N10.0398 (8)0.0493 (11)0.0410 (9)−0.0007 (10)0.0207 (7)0.0010 (9)
N20.0407 (9)0.0657 (16)0.0500 (11)0.0068 (10)0.0234 (8)0.0035 (10)
N30.0418 (8)0.0444 (11)0.0410 (9)0.0000 (10)0.0203 (7)0.0004 (9)
C10.0640 (16)0.0757 (19)0.0531 (15)0.0131 (15)0.0296 (14)0.0078 (13)
C20.0738 (19)0.104 (3)0.0513 (16)0.015 (2)0.0243 (15)0.0201 (17)
C30.0831 (18)0.085 (2)0.0498 (14)−0.002 (2)0.0368 (14)0.0091 (16)
C40.092 (2)0.083 (2)0.0690 (18)0.0091 (18)0.0574 (18)0.0011 (16)
C50.0673 (16)0.0746 (18)0.0560 (15)0.0157 (15)0.0353 (13)0.0103 (13)
C60.0459 (10)0.0514 (15)0.0429 (11)−0.0081 (12)0.0220 (9)0.0001 (11)
C70.0395 (10)0.0474 (13)0.0451 (11)−0.0023 (11)0.0216 (9)−0.0006 (10)
C80.0448 (11)0.0535 (14)0.0520 (12)0.0022 (12)0.0269 (10)−0.0003 (12)
C90.0583 (13)0.110 (3)0.0584 (15)0.012 (2)0.0380 (13)0.0084 (19)
C100.0607 (15)0.0610 (17)0.0487 (14)−0.0096 (13)0.0237 (12)0.0041 (12)
C110.0463 (12)0.0444 (13)0.0402 (11)0.0020 (9)0.0182 (10)0.0008 (9)
C120.0546 (14)0.0538 (15)0.0494 (13)−0.0061 (12)0.0237 (12)0.0018 (11)
C130.0511 (13)0.0465 (14)0.0512 (13)−0.0076 (10)0.0201 (11)−0.0039 (10)
C140.0515 (13)0.071 (2)0.0762 (18)−0.0059 (14)0.0270 (13)−0.0082 (15)
C150.0495 (15)0.072 (2)0.091 (2)−0.0005 (15)0.0126 (15)0.0044 (17)
C160.079 (2)0.064 (2)0.0590 (17)−0.0103 (16)0.0041 (16)0.0011 (14)
C170.092 (2)0.064 (2)0.0467 (14)−0.0145 (16)0.0250 (14)−0.0090 (13)
C180.0632 (15)0.0567 (16)0.0523 (14)−0.0026 (13)0.0240 (13)−0.0087 (12)
F10.084 (3)0.054 (2)0.219 (7)−0.0148 (17)0.107 (4)−0.037 (3)
F20.125 (4)0.104 (4)0.137 (4)−0.005 (3)0.081 (3)0.047 (3)
F30.079 (3)0.072 (3)0.216 (7)0.009 (2)0.083 (4)−0.037 (4)
F40.190 (7)0.091 (4)0.167 (5)−0.017 (4)0.143 (5)0.023 (4)
F50.076 (2)0.214 (8)0.081 (2)−0.029 (4)0.0164 (18)−0.037 (3)
F60.098 (3)0.163 (6)0.073 (2)−0.015 (3)0.002 (2)−0.033 (3)
F1'0.30 (2)0.26 (2)0.156 (13)−0.078 (17)0.172 (16)−0.120 (13)
F2'0.100 (8)0.052 (5)0.33 (2)−0.035 (5)0.145 (12)−0.062 (10)
F3'0.34 (3)0.40 (4)0.237 (19)−0.08 (2)0.24 (2)−0.16 (2)
F4'0.072 (6)0.075 (6)0.34 (3)−0.024 (5)0.120 (12)−0.059 (12)
F5'0.085 (6)0.148 (13)0.218 (16)0.027 (8)0.015 (9)0.130 (13)
F6'0.119 (9)0.163 (14)0.181 (14)0.025 (10)−0.017 (9)0.086 (12)
P1—F1'1.446 (10)C4—C51.386 (4)
P1—F2'1.498 (7)C4—H4A0.9300
P1—F5'1.495 (7)C5—C61.375 (4)
P1—F3'1.480 (10)C5—H5A0.9300
P1—F6'1.516 (8)C7—H7A0.9300
P1—F61.517 (4)C8—C91.508 (3)
P1—F41.533 (4)C9—H9A0.9700
P1—F4'1.539 (9)C9—H9B0.9700
P1—F11.565 (3)C10—C111.515 (3)
P1—F31.559 (4)C10—H10A0.9700
P1—F21.570 (4)C10—H10B0.9700
P1—F51.584 (4)C11—C121.537 (3)
O1—C91.410 (3)C11—H11A0.9800
O1—C101.422 (4)C12—C131.518 (3)
N1—C71.312 (3)C12—H12A0.9700
N1—N21.369 (2)C12—H12B0.9700
N1—C61.442 (3)C13—C141.371 (4)
N2—C81.292 (3)C13—C181.395 (4)
N3—C71.325 (2)C14—C151.391 (4)
N3—C81.364 (3)C14—H14A0.9300
N3—C111.486 (3)C15—C161.365 (5)
C1—C61.373 (4)C15—H15A0.9300
C1—C21.377 (4)C16—C171.361 (5)
C1—H1A0.9300C16—H16A0.9300
C2—C31.376 (5)C17—C181.379 (4)
C2—H2B0.9300C17—H17A0.9300
C3—C41.356 (5)C18—H18A0.9300
C3—H3A0.9300
F1'—P1—F2'92.7 (10)C4—C5—H5A120.8
F1'—P1—F5'100.2 (14)C1—C6—C5121.7 (2)
F2'—P1—F5'93.2 (9)C1—C6—N1118.7 (2)
F1'—P1—F3'174.1 (17)C5—C6—N1119.5 (2)
F2'—P1—F3'89.3 (11)N1—C7—N3107.70 (17)
F5'—P1—F3'85.2 (12)N1—C7—H7A126.2
F1'—P1—F6'89.4 (11)N3—C7—H7A126.2
F2'—P1—F6'88.0 (9)N2—C8—N3112.03 (18)
F5'—P1—F6'170.3 (13)N2—C8—C9127.4 (2)
F3'—P1—F6'85.1 (15)N3—C8—C9120.6 (2)
F1'—P1—F4'86.6 (10)O1—C9—C8110.13 (19)
F2'—P1—F4'178.6 (6)O1—C9—H9A109.6
F5'—P1—F4'88.1 (7)C8—C9—H9A109.6
F3'—P1—F4'91.3 (11)O1—C9—H9B109.6
F6'—P1—F4'90.9 (9)C8—C9—H9B109.6
F6—P1—F191.0 (3)H9A—C9—H9B108.1
F4—P1—F191.5 (3)O1—C10—C11110.0 (2)
F6—P1—F191.0 (3)O1—C10—H10A109.7
F4—P1—F191.5 (3)C11—C10—H10A109.7
F6—P1—F390.0 (3)O1—C10—H10B109.7
F4—P1—F386.5 (4)C11—C10—H10B109.7
F1—P1—F3177.8 (3)H10A—C10—H10B108.2
F6—P1—F288.1 (3)N3—C11—C10105.10 (19)
F4—P1—F2175.1 (4)N3—C11—C12110.14 (19)
F1—P1—F287.9 (3)C10—C11—C12114.0 (2)
F3—P1—F294.1 (4)N3—C11—H11A109.2
F6—P1—F5175.9 (5)C10—C11—H11A109.2
F4—P1—F587.3 (3)C12—C11—H11A109.2
F1—P1—F589.7 (3)C13—C12—C11110.6 (2)
F3—P1—F589.5 (3)C13—C12—H12A109.5
F2—P1—F587.8 (4)C11—C12—H12A109.5
C9—O1—C10111.0 (2)C13—C12—H12B109.5
C7—N1—N2110.85 (16)C11—C12—H12B109.5
C7—N1—C6128.92 (17)H12A—C12—H12B108.1
N2—N1—C6120.16 (17)C14—C13—C18118.4 (3)
C8—N2—N1103.74 (17)C14—C13—C12121.3 (2)
C7—N3—C8105.68 (17)C18—C13—C12120.3 (2)
C7—N3—C11130.00 (18)C13—C14—C15120.0 (3)
C8—N3—C11124.03 (17)C13—C14—H14A120.0
C6—C1—C2118.5 (3)C15—C14—H14A120.0
C6—C1—H1A120.7C16—C15—C14120.9 (3)
C2—C1—H1A120.7C16—C15—H15A119.6
C3—C2—C1120.6 (3)C14—C15—H15A119.6
C3—C2—H2B119.7C17—C16—C15119.7 (3)
C1—C2—H2B119.7C17—C16—H16A120.1
C4—C3—C2120.1 (2)C15—C16—H16A120.1
C4—C3—H3A120.0C16—C17—C18120.2 (3)
C2—C3—H3A120.0C16—C17—H17A119.9
C3—C4—C5120.7 (3)C18—C17—H17A119.9
C3—C4—H4A119.7C17—C18—C13120.8 (3)
C5—C4—H4A119.7C17—C18—H18A119.6
C6—C5—C4118.4 (3)C13—C18—H18A119.6
C6—C5—H5A120.8
D—H···AD—HH···AD···AD—H···A
P1—F1···Cg1i1.57 (1)3.034.235 (11)132
P1—F2···Cg11.57 (1)3.194.102 (11)115
P1—F2'···Cg11.50 (1)2.934.102 (11)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
P1—F1⋯Cg1i1.57 (1)3.034.235 (11)132
P1—F2⋯Cg11.57 (1)3.194.102 (11)115
P1—F2′⋯Cg11.50 (1)2.934.102 (11)133

Symmetry code: (i) . Cg1 is the centroid of the N1/N2/C8/N3/C7 ring.

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A highly enantio- and diastereoselective catalytic intramolecular Stetter reaction.

Authors:  Javier Read de Alaniz; Tomislav Rovis
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

3.  Umpolung of Michael acceptors catalyzed by N-heterocyclic carbenes.

Authors:  Christian Fischer; Sean W Smith; David A Powell; Gregory C Fu
Journal:  J Am Chem Soc       Date:  2006-02-08       Impact factor: 15.419

4.  A highly enantioselective catalytic intramolecular Stetter reaction.

Authors:  Mark S Kerr; Javier Read de Alaniz; Tomislav Rovis
Journal:  J Am Chem Soc       Date:  2002-09-04       Impact factor: 15.419

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.