Literature DB >> 21583177

Ethyl 2-[(3-chloro-phen-yl)hydrazono]-3-oxobutanoate.

Hoong-Kun Fun, Mahesh Padaki, Arun M Isloor, Suchada Chantrapromma.   

Abstract

The mol-ecule of the title oxobutanoate derivative, C(12)H(13)ClN(2)O(3), adopts a keto-hydrazo tautomeric form and is roughly planar, the angle between the benzene ring and the mean plane through the hydrazone and aliphatic chain being 1.49 (6)°. This planarity is further aided by the formation of an intra-molecular N-H⋯O hydrogen bond which generates an S(6) ring motif. The aromatic ring and aliphatic chain have a trans configuration with respect to the N-N bond. In the crystal packing, centrosymmetric R(2) (2)(16) dimers are formed through pairs of weak C-H⋯O(3-oxo) inter-actions. These dimers are linked together through weak C-H⋯O(carboxyl-ate C=O) inter-actions into ribbons along the b-axis direction. These ribbons are stacked along the a-axis direction. The crystal also exhibits Cl⋯Cl [3.4988 (6) Å] and C⋯O [3.167 (2)-3.335 (2) Å] short contacts.

Entities:  

Year:  2009        PMID: 21583177      PMCID: PMC2969699          DOI: 10.1107/S160053680901784X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to the bioactivity and applications of oxobutanoate derivatives, see: Alpaslan et al. (2005a ▶,b ▶); Stancho et al. (2008 ▶). For related structures, see: Alpaslan et al. (2005a ▶,b ▶); Fun et al. (2009 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

C12H13ClN2O3 M = 268.69 Triclinic, a = 4.0826 (2) Å b = 10.3196 (4) Å c = 15.1469 (6) Å α = 88.336 (3)° β = 87.033 (3)° γ = 83.734 (2)° V = 633.31 (5) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 120 K 0.39 × 0.11 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.890, T max = 0.981 11030 measured reflections 3678 independent reflections 2732 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.139 S = 1.05 3678 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.75 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680901784X/fb2150sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901784X/fb2150Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13ClN2O3Z = 2
Mr = 268.69F(000) = 280
Triclinic, P1Dx = 1.409 Mg m3
Hall symbol: -P 1Melting point: 360 K
a = 4.0826 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.3196 (4) ÅCell parameters from 3678 reflections
c = 15.1469 (6) Åθ = 1.4–30.0°
α = 88.336 (3)°µ = 0.30 mm1
β = 87.033 (3)°T = 120 K
γ = 83.734 (2)°Needle, yellow
V = 633.31 (5) Å30.39 × 0.11 × 0.06 mm
Bruker APEXII CCD area-detector diffractometer3678 independent reflections
Radiation source: sealed tube2732 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 30.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −5→5
Tmin = 0.890, Tmax = 0.981k = −14→14
11030 measured reflectionsl = −18→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0778P)2 + 0.1165P] where P = (Fo2 + 2Fc2)/3
3678 reflections(Δ/σ)max = 0.001
169 parametersΔρmax = 0.75 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.05405 (13)1.38226 (4)0.08494 (3)0.02972 (15)
O10.6525 (4)0.66454 (13)0.29235 (9)0.0307 (3)
O20.6912 (3)0.82739 (12)0.19234 (8)0.0233 (3)
O31.2031 (4)0.86080 (13)0.46009 (9)0.0300 (3)
N11.1619 (4)1.03691 (14)0.33708 (10)0.0199 (3)
N20.9988 (3)0.95997 (13)0.29359 (10)0.0189 (3)
C11.1244 (4)1.20062 (16)0.21705 (11)0.0207 (3)
H1A1.01551.14750.18260.025*
C21.1889 (4)1.32389 (17)0.18746 (12)0.0207 (3)
C31.3528 (4)1.40505 (16)0.23737 (12)0.0226 (4)
H3A1.39041.48800.21630.027*
C41.4591 (4)1.35961 (17)0.31912 (12)0.0229 (4)
H4A1.57321.41200.35280.027*
C51.3972 (4)1.23677 (16)0.35144 (12)0.0206 (3)
H5A1.46761.20690.40650.025*
C61.2282 (4)1.15919 (16)0.30004 (11)0.0185 (3)
C70.9369 (4)0.84466 (16)0.32803 (11)0.0190 (3)
C81.0544 (4)0.79195 (17)0.41344 (12)0.0222 (4)
C91.0059 (5)0.65572 (17)0.44501 (13)0.0260 (4)
H9A1.11620.63670.49910.039*
H9B1.09610.59500.40100.039*
H9C0.77450.64840.45510.039*
C100.7486 (4)0.76823 (16)0.27083 (11)0.0201 (3)
C110.5170 (5)0.75610 (17)0.13154 (12)0.0248 (4)
H11A0.32380.72470.16130.030*
H11B0.65960.68190.10890.030*
C120.4174 (5)0.8497 (2)0.05750 (14)0.0331 (4)
H12A0.30630.80570.01480.050*
H12B0.61030.88170.02970.050*
H12C0.27190.92140.08070.050*
H1N11.211 (6)1.016 (3)0.3940 (17)0.043 (7)*
U11U22U33U12U13U23
Cl10.0420 (3)0.0212 (2)0.0261 (2)−0.00346 (18)−0.00707 (18)0.00680 (16)
O10.0434 (8)0.0159 (6)0.0353 (7)−0.0126 (6)−0.0079 (6)0.0038 (5)
O20.0281 (6)0.0170 (6)0.0259 (6)−0.0066 (5)−0.0059 (5)0.0027 (5)
O30.0436 (8)0.0185 (6)0.0290 (7)−0.0051 (6)−0.0111 (6)0.0037 (5)
N10.0242 (7)0.0112 (6)0.0246 (8)−0.0018 (5)−0.0046 (6)0.0020 (5)
N20.0187 (7)0.0114 (6)0.0264 (7)−0.0006 (5)−0.0016 (6)−0.0006 (5)
C10.0244 (8)0.0139 (8)0.0245 (8)−0.0038 (6)−0.0033 (7)−0.0013 (6)
C20.0242 (8)0.0145 (8)0.0225 (8)0.0019 (6)−0.0025 (7)0.0036 (6)
C30.0271 (9)0.0108 (7)0.0303 (9)−0.0052 (6)−0.0001 (7)0.0018 (6)
C40.0249 (9)0.0138 (8)0.0310 (9)−0.0042 (6)−0.0045 (7)−0.0044 (7)
C50.0220 (8)0.0158 (8)0.0238 (8)0.0000 (6)−0.0039 (6)0.0007 (6)
C60.0198 (8)0.0105 (7)0.0249 (8)−0.0006 (6)0.0001 (6)0.0008 (6)
C70.0203 (8)0.0114 (7)0.0253 (8)−0.0016 (6)−0.0012 (6)0.0014 (6)
C80.0250 (8)0.0149 (8)0.0257 (9)0.0009 (6)−0.0005 (7)0.0019 (6)
C90.0306 (9)0.0157 (8)0.0310 (9)−0.0004 (7)−0.0026 (7)0.0052 (7)
C100.0195 (8)0.0153 (8)0.0254 (8)−0.0014 (6)−0.0012 (6)0.0005 (6)
C110.0276 (9)0.0185 (8)0.0292 (9)−0.0049 (7)−0.0045 (7)−0.0031 (7)
C120.0368 (11)0.0286 (10)0.0349 (11)−0.0045 (8)−0.0116 (9)0.0023 (8)
Cl1—C21.7432 (18)C4—H4A0.9300
O1—C101.210 (2)C5—C61.391 (2)
O2—C101.340 (2)C5—H5A0.9300
O2—C111.455 (2)C7—C81.472 (2)
O3—C81.241 (2)C7—C101.485 (2)
N1—N21.303 (2)C8—C91.502 (2)
N1—C61.414 (2)C9—H9A0.9600
N1—H1N10.91 (3)C9—H9B0.9600
N2—C71.330 (2)C9—H9C0.9600
C1—C21.384 (2)C11—C121.501 (3)
C1—C61.388 (2)C11—H11A0.9700
C1—H1A0.9300C11—H11B0.9700
C2—C31.390 (2)C12—H12A0.9600
C3—C41.385 (2)C12—H12B0.9600
C3—H3A0.9300C12—H12C0.9600
C4—C51.390 (2)
C10—O2—C11115.77 (13)C8—C7—C10121.60 (14)
N2—N1—C6120.27 (15)O3—C8—C7119.29 (15)
N2—N1—H1N1119.6 (16)O3—C8—C9118.90 (16)
C6—N1—H1N1119.7 (16)C7—C8—C9121.80 (15)
N1—N2—C7120.48 (15)C8—C9—H9A109.5
C2—C1—C6117.59 (15)C8—C9—H9B109.5
C2—C1—H1A121.2H9A—C9—H9B109.5
C6—C1—H1A121.2C8—C9—H9C109.5
C1—C2—C3122.41 (16)H9A—C9—H9C109.5
C1—C2—Cl1119.40 (13)H9B—C9—H9C109.5
C3—C2—Cl1118.17 (13)O1—C10—O2123.08 (16)
C4—C3—C2118.50 (15)O1—C10—C7124.24 (16)
C4—C3—H3A120.8O2—C10—C7112.67 (14)
C2—C3—H3A120.8O2—C11—C12106.71 (14)
C3—C4—C5120.83 (15)O2—C11—H11A110.4
C3—C4—H4A119.6C12—C11—H11A110.4
C5—C4—H4A119.6O2—C11—H11B110.4
C4—C5—C6118.93 (16)C12—C11—H11B110.4
C4—C5—H5A120.5H11A—C11—H11B108.6
C6—C5—H5A120.5C11—C12—H12A109.5
C1—C6—C5121.71 (15)C11—C12—H12B109.5
C1—C6—N1121.53 (15)H12A—C12—H12B109.5
C5—C6—N1116.75 (15)C11—C12—H12C109.5
N2—C7—C8124.09 (15)H12A—C12—H12C109.5
N2—C7—C10114.25 (15)H12B—C12—H12C109.5
C6—N1—N2—C7179.76 (15)N1—N2—C7—C8−2.8 (3)
C6—C1—C2—C30.4 (3)N1—N2—C7—C10179.91 (14)
C6—C1—C2—Cl1−178.31 (13)N2—C7—C8—O34.8 (3)
C1—C2—C3—C40.9 (3)C10—C7—C8—O3−178.06 (16)
Cl1—C2—C3—C4179.64 (13)N2—C7—C8—C9−173.83 (16)
C2—C3—C4—C5−1.3 (3)C10—C7—C8—C93.3 (3)
C3—C4—C5—C60.4 (3)C11—O2—C10—O1−2.8 (2)
C2—C1—C6—C5−1.3 (3)C11—O2—C10—C7178.04 (14)
C2—C1—C6—N1177.53 (16)N2—C7—C10—O1−175.72 (16)
C4—C5—C6—C10.9 (3)C8—C7—C10—O16.9 (3)
C4—C5—C6—N1−177.98 (16)N2—C7—C10—O23.4 (2)
N2—N1—C6—C1−0.3 (2)C8—C7—C10—O2−173.96 (15)
N2—N1—C6—C5178.63 (15)C10—O2—C11—C12168.38 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O30.91 (3)1.87 (3)2.564 (2)132 (3)
C3—H3A···O1i0.932.543.211 (2)129
C5—H5A···O3ii0.932.523.433 (2)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O30.91 (3)1.87 (3)2.564 (2)132 (3)
C3—H3A⋯O1i0.932.543.211 (2)129
C5—H5A⋯O3ii0.932.523.433 (2)166

Symmetry codes: (i) ; (ii) .

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