Literature DB >> 21583164

[1-(1-Adamantylamino)ethyl-idene]oxonium methane-sulfonate.

Robert Vícha, Marek Nečas, Zuzana Kozubková, Milan Potáček.   

Abstract

In the title salt, C(12)H(20)NO(+)·CH(3)SO(3) (-), the [1-(1-adamantyl-amino)ethyl-idene]oxonium cations and methane-sulfonate anions are linked into chains along the a axis via O-H⋯O and N-H⋯O hydrogen bonds. All non-H atoms of the acetamido group are essentially planar, with a maximum deviation of 0.0085 (12) Å. In comparison with related structures, the carbonyl C=O bond is slightly elongated [1.249 (2) Å], whereas the amide C-N bond is shortened [1.292 (2) Å].

Entities:  

Year:  2009        PMID: 21583164      PMCID: PMC2969600          DOI: 10.1107/S1600536809017632

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previously published structures of N-(1-adamant­yl)­acetamide, see: Pröhl et al. (1997 ▶); Kashino et al. (1998 ▶); Mizoguchi et al. (1997 ▶). For the preparation of N-(1-adaman­t­yl)­acetamide, see: Bach et al. (1979 ▶, 1980 ▶); Gerzon et al. (1963 ▶); Stetter et al. (1959 ▶, 1960 ▶). For the biological activity of related adamantane derivatives, see: Davies et al. (1964 ▶); Aldrich et al. (1971 ▶).

Experimental

Crystal data

C12H20NOCH3SO3 M = 289.38 Orthorhombic, a = 12.9848 (7) Å b = 11.2625 (6) Å c = 19.0037 (10) Å V = 2779.1 (3) Å3 Z = 8 Mo Kα radiation μ = 0.24 mm−1 T = 120 K 0.40 × 0.40 × 0.35 mm

Data collection

Kuma KM-4 CCD diffractometer Absorption correction: multi-scan (Xcalibur; Oxford Diffraction, 2006 ▶) T min = 0.824, T max = 0.914 19453 measured reflections 2454 independent reflections 2000 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.102 S = 1.09 2454 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.47 e Å−3 Data collection: Xcalibur (Oxford Diffraction, 2006 ▶); cell refinement: Xcalibur (Oxford Diffraction, 2006 ▶); data reduction: Xcalibur (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017632/pk2161sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017632/pk2161Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H20NO+·CH3SO3Dx = 1.383 Mg m3
Mr = 289.38Melting point: 445 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2454 reflections
a = 12.9848 (7) Åθ = 3.1–25.0°
b = 11.2625 (6) ŵ = 0.24 mm1
c = 19.0037 (10) ÅT = 120 K
V = 2779.1 (3) Å3Block, colourless
Z = 80.40 × 0.40 × 0.35 mm
F(000) = 1248
Kuma KM-4 CCD diffractometer2454 independent reflections
Radiation source: fine-focus sealed tube2000 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 0.06 pixels mm-1θmax = 25.0°, θmin = 3.1°
ω scansh = −15→14
Absorption correction: multi-scan (Xcalibur; Oxford Diffraction, 2006)k = −13→13
Tmin = 0.824, Tmax = 0.914l = −21→22
19453 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.054P)2 + 1.529P] where P = (Fo2 + 2Fc2)/3
2454 reflections(Δ/σ)max = 0.001
180 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.09044 (13)0.28700 (14)0.34406 (9)0.0181 (4)
C2−0.00380 (13)0.22857 (15)0.30176 (9)0.0195 (4)
H2A0.06210.26980.31110.023*
H2B0.00380.14450.31620.023*
C3−0.10319 (14)0.41701 (15)0.32215 (9)0.0201 (4)
H3A−0.15940.45410.34960.024*
H3B−0.03880.46130.33170.024*
C4−0.19133 (14)0.22087 (16)0.33012 (9)0.0229 (4)
H4A−0.18460.13700.34510.027*
H4B−0.24770.25760.35760.027*
C5−0.21663 (15)0.22635 (17)0.25177 (10)0.0251 (4)
H5−0.28240.18280.24270.030*
C6−0.13002 (15)0.16913 (16)0.20928 (10)0.0262 (4)
H6A−0.14670.17240.15850.031*
H6B−0.12250.08470.22300.031*
C7−0.02922 (14)0.23530 (16)0.22322 (10)0.0225 (4)
H70.02760.19790.19540.027*
C8−0.04113 (14)0.36523 (15)0.20149 (9)0.0224 (4)
H8A−0.05670.37020.15060.027*
H8B0.02400.40840.21030.027*
C9−0.12838 (13)0.42199 (15)0.24371 (9)0.0213 (4)
H9−0.13620.50680.22910.026*
C10−0.22900 (14)0.35595 (17)0.22953 (10)0.0256 (4)
H10A−0.24610.36030.17880.031*
H10B−0.28580.39320.25640.031*
C110.00322 (13)0.32640 (15)0.45588 (9)0.0211 (4)
C120.01287 (15)0.30548 (18)0.53284 (10)0.0271 (4)
H12A0.07620.26090.54240.041*
H12B−0.04670.25990.54950.041*
H12C0.01550.38190.55750.041*
N1−0.06903 (11)0.27539 (13)0.42026 (8)0.0195 (3)
H1−0.1102 (15)0.2308 (18)0.4446 (11)0.023*
O10.06855 (10)0.39456 (12)0.42407 (6)0.0268 (3)
H20.1158 (17)0.436 (2)0.4560 (12)0.040*
S10.29158 (4)0.49446 (4)0.50332 (2)0.02087 (16)
O20.17962 (12)0.51334 (12)0.50208 (7)0.0302 (3)
O30.31512 (12)0.37147 (12)0.48779 (7)0.0342 (4)
O40.33796 (11)0.54034 (13)0.56618 (7)0.0357 (4)
C130.33885 (17)0.57840 (19)0.43323 (10)0.0356 (5)
H13A0.31910.66170.43960.053*
H13B0.30990.54850.38900.053*
H13C0.41410.57210.43180.053*
U11U22U33U12U13U23
C10.0179 (9)0.0183 (8)0.0179 (9)0.0002 (7)0.0006 (7)0.0014 (7)
C20.0182 (9)0.0204 (9)0.0201 (9)0.0034 (7)−0.0005 (7)−0.0017 (7)
C30.0235 (9)0.0163 (8)0.0206 (9)0.0009 (7)0.0028 (7)−0.0011 (7)
C40.0213 (9)0.0212 (9)0.0261 (10)−0.0034 (7)−0.0001 (7)0.0048 (7)
C50.0213 (9)0.0250 (10)0.0289 (10)−0.0074 (8)−0.0056 (7)0.0029 (8)
C60.0341 (11)0.0185 (9)0.0259 (10)−0.0019 (8)−0.0061 (8)−0.0019 (7)
C70.0250 (9)0.0230 (9)0.0195 (9)0.0043 (8)−0.0002 (7)−0.0037 (7)
C80.0238 (9)0.0260 (9)0.0176 (9)−0.0027 (8)−0.0004 (7)0.0002 (7)
C90.0254 (9)0.0150 (8)0.0236 (9)0.0005 (7)−0.0008 (7)0.0027 (7)
C100.0209 (9)0.0281 (10)0.0277 (10)0.0022 (8)−0.0044 (8)0.0042 (8)
C110.0207 (9)0.0209 (9)0.0216 (9)0.0041 (7)0.0029 (7)−0.0015 (7)
C120.0311 (11)0.0299 (10)0.0202 (10)0.0010 (8)−0.0021 (8)0.0001 (8)
N10.0214 (8)0.0187 (7)0.0183 (8)−0.0001 (6)0.0022 (6)0.0015 (6)
O10.0257 (7)0.0330 (7)0.0216 (7)−0.0080 (6)−0.0009 (5)−0.0008 (6)
S10.0221 (3)0.0229 (3)0.0175 (3)−0.00163 (17)−0.00125 (16)0.00108 (17)
O20.0240 (7)0.0328 (8)0.0337 (8)−0.0003 (6)0.0006 (5)−0.0114 (6)
O30.0433 (9)0.0270 (8)0.0323 (8)0.0092 (6)−0.0058 (6)0.0028 (6)
O40.0406 (8)0.0440 (8)0.0226 (7)−0.0109 (7)−0.0093 (6)0.0014 (6)
C130.0489 (13)0.0353 (11)0.0227 (10)−0.0117 (10)0.0030 (9)0.0021 (8)
C1—N11.480 (2)C8—H8A0.9900
C1—C41.530 (2)C8—H8B0.9900
C1—C31.531 (2)C9—C101.527 (2)
C1—C21.531 (2)C9—H91.0000
C2—C71.530 (3)C10—H10A0.9900
C2—H2A0.9900C10—H10B0.9900
C2—H2B0.9900C11—N11.292 (2)
C3—C91.527 (2)C11—O11.294 (2)
C3—H3A0.9900C11—C121.487 (3)
C3—H3B0.9900C12—H12A0.9800
C4—C51.526 (3)C12—H12B0.9800
C4—H4A0.9900C12—H12C0.9800
C4—H4B0.9900N1—H10.87 (2)
C5—C61.527 (3)O1—H20.98 (2)
C5—C101.528 (2)S1—O41.4343 (14)
C5—H51.0000S1—O31.4489 (14)
C6—C71.529 (3)S1—O21.4695 (15)
C6—H6A0.9900S1—C131.7448 (19)
C6—H6B0.9900C13—H13A0.9800
C7—C81.528 (2)C13—H13B0.9800
C7—H71.0000C13—H13C0.9800
C8—C91.528 (2)
N1—C1—C4106.69 (13)C7—C8—H8A109.8
N1—C1—C3111.76 (14)C9—C8—H8A109.8
C4—C1—C3109.01 (14)C7—C8—H8B109.8
N1—C1—C2109.73 (14)C9—C8—H8B109.8
C4—C1—C2109.20 (14)H8A—C8—H8B108.2
C3—C1—C2110.34 (14)C3—C9—C10109.73 (14)
C7—C2—C1109.40 (14)C3—C9—C8109.77 (14)
C7—C2—H2A109.8C10—C9—C8109.74 (14)
C1—C2—H2A109.8C3—C9—H9109.2
C7—C2—H2B109.8C10—C9—H9109.2
C1—C2—H2B109.8C8—C9—H9109.2
H2A—C2—H2B108.2C9—C10—C5109.05 (14)
C9—C3—C1108.89 (14)C9—C10—H10A109.9
C9—C3—H3A109.9C5—C10—H10A109.9
C1—C3—H3A109.9C9—C10—H10B109.9
C9—C3—H3B109.9C5—C10—H10B109.9
C1—C3—H3B109.9H10A—C10—H10B108.3
H3A—C3—H3B108.3N1—C11—O1119.67 (16)
C5—C4—C1109.48 (14)N1—C11—C12120.42 (16)
C5—C4—H4A109.8O1—C11—C12119.90 (16)
C1—C4—H4A109.8C11—C12—H12A109.5
C5—C4—H4B109.8C11—C12—H12B109.5
C1—C4—H4B109.8H12A—C12—H12B109.5
H4A—C4—H4B108.2C11—C12—H12C109.5
C4—C5—C6109.89 (15)H12A—C12—H12C109.5
C4—C5—C10109.34 (15)H12B—C12—H12C109.5
C6—C5—C10109.53 (15)C11—N1—C1127.58 (15)
C4—C5—H5109.4C11—N1—H1115.2 (14)
C6—C5—H5109.4C1—N1—H1117.2 (14)
C10—C5—H5109.4C11—O1—H2113.8 (13)
C5—C6—C7109.45 (14)O4—S1—O3115.18 (9)
C5—C6—H6A109.8O4—S1—O2112.12 (8)
C7—C6—H6A109.8O3—S1—O2110.11 (8)
C5—C6—H6B109.8O4—S1—C13107.03 (9)
C7—C6—H6B109.8O3—S1—C13106.76 (9)
H6A—C6—H6B108.2O2—S1—C13104.92 (10)
C8—C7—C6109.47 (15)S1—C13—H13A109.5
C8—C7—C2109.44 (14)S1—C13—H13B109.5
C6—C7—C2109.23 (15)H13A—C13—H13B109.5
C8—C7—H7109.6S1—C13—H13C109.5
C6—C7—H7109.6H13A—C13—H13C109.5
C2—C7—H7109.6H13B—C13—H13C109.5
C7—C8—C9109.49 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.87 (2)1.98 (2)2.838 (2)170.1 (19)
O1—H2···O20.98 (2)1.49 (2)2.4632 (18)173 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.87 (2)1.98 (2)2.838 (2)170.1 (19)
O1—H2⋯O20.98 (2)1.49 (2)2.4632 (18)173 (2)

Symmetry code: (i) .

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