| Literature DB >> 21583152 |
Abstract
The redetermined crystal structure of the title compound, C(11)H(13)N(2)O(2) (+)·Br(-), is reported. Data collection at 100 K about three crystallographic axes resulted in a crystal structure with significantly higher precision in comparison to the two-dimensional data collected at 176 K [Takigawa et al. [(1966) Bull. Chem. Soc. Jpn, 39, 2369-2378]. The carboxyl group and indole ring system are planar, with maximum deviations of 0.002 (2) and 0.007 (2) Å, respectively, and make an angle of 70.17 (1)° with each other. The mol-ecules are arranged in double layers of carboxyl and amino groups parallel to the ab plane, stabilized by an extensive network of N-H⋯Br and O-H⋯Br hydrogen bonds. The polar layer is held together by a network of three N-H⋯Br hydrogen bonds and one O-H⋯Br hydrogen bond. In the non-polar layer, the indole rings are linked mainly by electrostatic N-H⋯C inter-actions between the polarized bond N-H (H is δ(+)) of the pyrrole unit and two of the ring C atoms (δ(-)) of the benzene rings of adjacent mol-ecules. The distances of these electrostatic inter-actions are 2.57 and 2.68 Å, respectively. C-H⋯O and C-H⋯π inter-actions are also present.Entities:
Year: 2009 PMID: 21583152 PMCID: PMC2969532 DOI: 10.1107/S1600536809017322
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H13N2O2+·Br− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 4434 reflections |
| θ = 3.8–31.9° | |
| µ = 3.52 mm−1 | |
| β = 100.688 (3)° | Needle, colourless |
| 0.40 × 0.15 × 0.15 mm | |
| Oxford Xcalibur2 CCD diffractometer | 2731 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2507 reflections with |
| graphite | |
| Detector resolution: 8.4190 pixels mm-1 | θmax = 32.0°, θmin = 4.1° |
| ω/2θ scans | |
| Absorption correction: multi-scan (SCALE3 ABSPACK in | |
| 5749 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2731 reflections | Δρmax = 0.33 e Å−3 |
| 147 parameters | Δρmin = −1.14 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 523 Freidel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.009 (9) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.2755 (3) | 0.4954 (5) | 0.66336 (17) | 0.0112 (4) | |
| H6 | 0.4001 | 0.5280 | 0.6774 | 0.013* | |
| C2 | 0.1920 (3) | 0.3004 (4) | 0.69909 (15) | 0.0095 (5) | |
| C3 | 0.0055 (3) | 0.3213 (4) | 0.65929 (15) | 0.0086 (4) | |
| C4 | −0.1449 (3) | 0.1811 (5) | 0.66802 (15) | 0.0111 (4) | |
| H1 | −0.1339 | 0.0367 | 0.7065 | 0.013* | |
| C5 | −0.3108 (3) | 0.2569 (9) | 0.61935 (14) | 0.0141 (4) | |
| H2 | −0.4140 | 0.1638 | 0.6253 | 0.017* | |
| C6 | −0.3286 (3) | 0.4686 (5) | 0.56162 (17) | 0.0141 (5) | |
| H3 | −0.4436 | 0.5159 | 0.5291 | 0.017* | |
| C7 | −0.1815 (3) | 0.6103 (5) | 0.55101 (17) | 0.0125 (4) | |
| H4 | −0.1932 | 0.7530 | 0.5116 | 0.015* | |
| C8 | −0.0151 (3) | 0.5338 (5) | 0.60080 (16) | 0.0103 (4) | |
| C9 | 0.2770 (3) | 0.0989 (5) | 0.76424 (16) | 0.0100 (4) | |
| H7 | 0.3862 | 0.0421 | 0.7428 | 0.012* | |
| H8 | 0.1939 | −0.0438 | 0.7591 | 0.012* | |
| C10 | 0.3269 (3) | 0.1746 (5) | 0.86847 (15) | 0.0109 (4) | |
| H9 | 0.3832 | 0.0280 | 0.9049 | 0.013* | |
| C11 | 0.4583 (3) | 0.3889 (5) | 0.88531 (16) | 0.0124 (5) | |
| N1 | 0.1513 (3) | 0.6363 (4) | 0.60405 (14) | 0.0120 (4) | |
| H5 | 0.1746 | 0.7698 | 0.5733 | 0.014* | |
| N2 | 0.1651 (2) | 0.2443 (6) | 0.90642 (12) | 0.0142 (3) | |
| H13 | 0.1107 | 0.3761 | 0.8735 | 0.021* | |
| H11 | 0.1972 | 0.2860 | 0.9683 | 0.021* | |
| H12 | 0.0885 | 0.1133 | 0.9006 | 0.021* | |
| O1 | 0.4357 (3) | 0.5748 (4) | 0.92793 (13) | 0.0166 (4) | |
| O2 | 0.5974 (2) | 0.3408 (4) | 0.84628 (15) | 0.0229 (4) | |
| H10 | 0.6731 | 0.4547 | 0.8596 | 0.034* | |
| Br1 | 0.90610 (3) | 0.74408 (5) | 0.873511 (13) | 0.01394 (7) |
| C1 | 0.0119 (10) | 0.0122 (12) | 0.0092 (10) | −0.0014 (9) | 0.0012 (8) | −0.0008 (8) |
| C2 | 0.0108 (9) | 0.0105 (14) | 0.0072 (9) | 0.0005 (7) | 0.0017 (7) | −0.0011 (7) |
| C3 | 0.0107 (10) | 0.0096 (10) | 0.0051 (9) | 0.0013 (7) | 0.0001 (7) | −0.0008 (7) |
| C4 | 0.0132 (10) | 0.0116 (11) | 0.0080 (9) | 0.0002 (8) | 0.0005 (7) | 0.0008 (7) |
| C5 | 0.0117 (9) | 0.0175 (11) | 0.0133 (9) | −0.0010 (17) | 0.0028 (7) | −0.0037 (17) |
| C6 | 0.0122 (11) | 0.0190 (13) | 0.0104 (11) | 0.0051 (9) | 0.0002 (8) | 0.0005 (9) |
| C7 | 0.0176 (11) | 0.0114 (11) | 0.0084 (10) | 0.0043 (9) | 0.0024 (8) | 0.0010 (8) |
| C8 | 0.0150 (11) | 0.0099 (10) | 0.0063 (10) | −0.0006 (9) | 0.0027 (8) | −0.0012 (8) |
| C9 | 0.0107 (10) | 0.0092 (10) | 0.0089 (10) | −0.0004 (8) | −0.0010 (8) | −0.0020 (8) |
| C10 | 0.0142 (11) | 0.0095 (10) | 0.0081 (10) | −0.0010 (8) | −0.0002 (7) | −0.0002 (8) |
| C11 | 0.0128 (10) | 0.0127 (12) | 0.0091 (10) | −0.0035 (9) | −0.0048 (8) | 0.0010 (9) |
| N1 | 0.0172 (10) | 0.0092 (10) | 0.0095 (9) | −0.0020 (8) | 0.0023 (7) | 0.0019 (7) |
| N2 | 0.0194 (8) | 0.0124 (8) | 0.0120 (7) | −0.0064 (15) | 0.0062 (6) | −0.0017 (14) |
| O1 | 0.0216 (9) | 0.0114 (9) | 0.0158 (9) | −0.0046 (7) | 0.0009 (7) | −0.0030 (7) |
| O2 | 0.0124 (9) | 0.0217 (10) | 0.0354 (11) | −0.0078 (8) | 0.0061 (8) | −0.0112 (9) |
| Br1 | 0.01610 (10) | 0.01382 (11) | 0.01214 (9) | −0.00518 (15) | 0.00322 (6) | 0.00128 (14) |
| C1—C2 | 1.377 (3) | C8—N1 | 1.377 (3) |
| C1—N1 | 1.381 (3) | C9—C10 | 1.537 (3) |
| C1—H6 | 0.9500 | C9—H7 | 0.9900 |
| C2—C3 | 1.436 (3) | C9—H8 | 0.9900 |
| C2—C9 | 1.502 (3) | C10—N2 | 1.488 (3) |
| C3—C4 | 1.398 (3) | C10—C11 | 1.518 (3) |
| C3—C8 | 1.413 (3) | C10—H9 | 1.0000 |
| C4—C5 | 1.390 (3) | C11—O1 | 1.204 (3) |
| C4—H1 | 0.9500 | C11—O2 | 1.316 (3) |
| C5—C6 | 1.404 (5) | N1—H5 | 0.8800 |
| C5—H2 | 0.9500 | N2—H13 | 0.9100 |
| C6—C7 | 1.389 (4) | N2—H11 | 0.9100 |
| C6—H3 | 0.9500 | N2—H12 | 0.9100 |
| C7—C8 | 1.399 (3) | O2—H10 | 0.8400 |
| C7—H4 | 0.9500 | ||
| C2—C1—N1 | 109.8 (2) | C2—C9—H7 | 108.5 |
| C2—C1—H6 | 125.1 | C10—C9—H7 | 108.5 |
| N1—C1—H6 | 125.1 | C2—C9—H8 | 108.5 |
| C1—C2—C3 | 106.5 (2) | C10—C9—H8 | 108.5 |
| C1—C2—C9 | 127.5 (2) | H7—C9—H8 | 107.5 |
| C3—C2—C9 | 126.0 (2) | N2—C10—C11 | 108.5 (2) |
| C4—C3—C8 | 119.2 (2) | N2—C10—C9 | 110.80 (18) |
| C4—C3—C2 | 133.6 (2) | C11—C10—C9 | 113.26 (19) |
| C8—C3—C2 | 107.1 (2) | N2—C10—H9 | 108.0 |
| C5—C4—C3 | 118.8 (3) | C11—C10—H9 | 108.0 |
| C5—C4—H1 | 120.6 | C9—C10—H9 | 108.0 |
| C3—C4—H1 | 120.6 | O1—C11—O2 | 125.8 (2) |
| C4—C5—C6 | 121.1 (3) | O1—C11—C10 | 124.1 (2) |
| C4—C5—H2 | 119.4 | O2—C11—C10 | 110.0 (2) |
| C6—C5—H2 | 119.4 | C8—N1—C1 | 108.9 (2) |
| C7—C6—C5 | 121.4 (2) | C8—N1—H5 | 125.6 |
| C7—C6—H3 | 119.3 | C1—N1—H5 | 125.6 |
| C5—C6—H3 | 119.3 | C10—N2—H13 | 109.5 |
| C6—C7—C8 | 117.1 (2) | C10—N2—H11 | 109.5 |
| C6—C7—H4 | 121.4 | H13—N2—H11 | 109.5 |
| C8—C7—H4 | 121.4 | C10—N2—H12 | 109.5 |
| N1—C8—C7 | 129.9 (2) | H13—N2—H12 | 109.5 |
| N1—C8—C3 | 107.7 (2) | H11—N2—H12 | 109.5 |
| C7—C8—C3 | 122.4 (2) | C11—O2—H10 | 109.5 |
| C2—C9—C10 | 114.9 (2) | ||
| N1—C1—C2—C3 | 0.3 (3) | C2—C3—C8—N1 | 0.6 (2) |
| N1—C1—C2—C9 | 178.4 (2) | C4—C3—C8—C7 | 0.1 (3) |
| C1—C2—C3—C4 | 179.8 (2) | C2—C3—C8—C7 | −179.7 (2) |
| C9—C2—C3—C4 | 1.6 (4) | C1—C2—C9—C10 | 78.8 (3) |
| C1—C2—C3—C8 | −0.5 (2) | C3—C2—C9—C10 | −103.4 (3) |
| C9—C2—C3—C8 | −178.7 (2) | C2—C9—C10—N2 | 62.4 (3) |
| C8—C3—C4—C5 | −0.6 (3) | C2—C9—C10—C11 | −59.8 (3) |
| C2—C3—C4—C5 | 179.1 (3) | N2—C10—C11—O1 | 4.3 (3) |
| C3—C4—C5—C6 | 0.6 (4) | C9—C10—C11—O1 | 127.8 (3) |
| C4—C5—C6—C7 | −0.1 (4) | N2—C10—C11—O2 | −175.31 (19) |
| C5—C6—C7—C8 | −0.4 (4) | C9—C10—C11—O2 | −51.8 (3) |
| C6—C7—C8—N1 | −179.9 (2) | C7—C8—N1—C1 | 179.9 (2) |
| C6—C7—C8—C3 | 0.4 (3) | C3—C8—N1—C1 | −0.4 (3) |
| C4—C3—C8—N1 | −179.7 (2) | C2—C1—N1—C8 | 0.1 (3) |
| H··· | ||||
| C7—H4···Cg1i | 0.95 | 2.66 | 3.494 (3) | 146 |
| N1—H5···Cg2i | 0.88 | 2.72 | 3.406 (2) | 136 |
| N2—H11···Br1ii | 0.91 | 2.56 | 3.3208 (17) | 142 |
| N2—H12···Br1iii | 0.91 | 2.42 | 3.322 (3) | 173 |
| N2—H13···Br1iv | 0.91 | 2.52 | 3.320 (3) | 147 |
| C4—H1···Br1iii | 0.95 | 2.85 | 3.750 (2) | 159 |
| C10—H9···O1v | 1.00 | 2.49 | 3.404 (3) | 153 |
| C10—H9···O1ii | 1.00 | 2.56 | 3.199 (3) | 121 |
| O2—H10···Br1 | 0.84 | 2.34 | 3.173 (2) | 169 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C7—H4⋯ | 0.95 | 2.66 | 3.494 (3) | 146 |
| N1—H5⋯ | 0.88 | 2.72 | 3.406 (2) | 136 |
| N2—H11⋯Br1ii | 0.91 | 2.56 | 3.3208 (17) | 142 |
| N2—H12⋯Br1iii | 0.91 | 2.42 | 3.322 (3) | 173 |
| N2—H13⋯Br1iv | 0.91 | 2.52 | 3.320 (3) | 147 |
| C4—H1⋯Br1iii | 0.95 | 2.85 | 3.750 (2) | 159 |
| C10—H9⋯O1v | 1.00 | 2.49 | 3.404 (3) | 153 |
| C10—H9⋯O1ii | 1.00 | 2.56 | 3.199 (3) | 121 |
| O2—H10⋯Br1 | 0.84 | 2.34 | 3.173 (2) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg1 is the centroid of the N1/C1–C3/C8 ring and Cg2 is the centroid of the C3–C8 ring.