Literature DB >> 21583141

2,2'-Dimethoxy-4,4'-[rel-(2R,3S)-2,3-di-methylbutane-1,4-diyl]diphenol.

Carmen L Salinas-Salazar, María Del Rayo Camacho-Corona, Sylvain Bernès, Noemi Waksman de Torres.   

Abstract

The title mol-ecule, C(20)H(26)O(4), commonly known as meso-dihydro-guaiaretic acid, is a naturally occurring lignan extracted from Larrea tridentata and other plants. The mol-ecule has a noncrystallographic inversion center situated at the midpoint of the central C-C bond, generating the meso stereoisomer. The central C-C-C-C alkyl chain displays an all-trans conformation, allowing an almost parallel arrangement of the benzene rings, which make a dihedral angle of 5.0 (3)°. Both hydr-oxy groups form weak O-H⋯O-H chains of hydrogen bonds along [100]. The resulting supra-molecular structure is an undulating plane parallel to (010).

Entities:  

Year:  2009        PMID: 21583141      PMCID: PMC2969660          DOI: 10.1107/S1600536809017292

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the extraction of the title mol­ecule from Larrea tridentata, see: Waller & Gisvold (1945 ▶). For previous phytochemical characterizations, see: Gnabre et al. (1995 ▶); Konno et al. (1990 ▶); Tyler & Foster (1999 ▶). For the activity of this plant against Mycobacterium tuberculosis, see: Camacho-Corona et al. (2008 ▶).

Experimental

Crystal data

C20H26O4 M = 330.41 Orthorhombic, a = 5.1355 (8) Å b = 12.024 (2) Å c = 30.158 (5) Å V = 1862.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.50 × 0.40 × 0.18 mm

Data collection

Siemens P4 diffractometer Absorption correction: none 3966 measured reflections 1937 independent reflections 1196 reflections with I > 2σ(I) R int = 0.159 2 standard reflections every 98 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.139 S = 1.00 1937 reflections 227 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017292/is2391sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017292/is2391Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H26O4Dx = 1.179 Mg m3
Mr = 330.41Melting point: 360 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 54 reflections
a = 5.1355 (8) Åθ = 4.4–11.0°
b = 12.024 (2) ŵ = 0.08 mm1
c = 30.158 (5) ÅT = 298 K
V = 1862.2 (5) Å3Plate, colourless
Z = 40.50 × 0.40 × 0.18 mm
F(000) = 712
Siemens P4 diffractometerRint = 0.159
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 1.8°
graphiteh = −6→6
ω scansk = −14→1
3966 measured reflectionsl = −35→1
1937 independent reflections2 standard reflections every 98 reflections
1196 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0472P)2] where P = (Fo2 + 2Fc2)/3
1937 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.18 e Å3
2 restraintsΔρmin = −0.17 e Å3
0 constraints
xyzUiso*/Ueq
O10.7382 (7)0.4677 (2)0.26965 (7)0.0629 (8)
O20.4317 (8)0.3034 (3)0.24222 (9)0.0732 (10)
H20.580 (6)0.327 (5)0.2350 (16)0.110*
O130.2881 (7)0.5103 (3)0.67472 (8)0.0703 (9)
O140.5820 (8)0.6849 (3)0.69302 (8)0.0712 (10)
H140.451 (8)0.650 (4)0.7037 (14)0.107*
C10.5599 (9)0.4296 (3)0.29987 (11)0.0493 (11)
C20.4047 (9)0.3442 (3)0.28494 (10)0.0505 (11)
C30.2159 (10)0.2992 (3)0.31135 (13)0.0614 (12)
H3A0.11100.24190.30090.074*
C40.1827 (10)0.3406 (4)0.35425 (11)0.0619 (12)
H4A0.05360.31090.37230.074*
C50.3379 (9)0.4242 (4)0.36995 (11)0.0540 (11)
C60.5250 (10)0.4695 (3)0.34251 (11)0.0541 (11)
H6A0.62860.52750.35280.065*
C70.3030 (9)0.4706 (4)0.41668 (11)0.0676 (13)
H7A0.14460.44000.42920.081*
H7B0.28110.55060.41470.081*
C80.5292 (10)0.4456 (3)0.44808 (11)0.0516 (11)
H8B0.68590.47890.43520.062*
C90.4850 (9)0.5012 (3)0.49355 (10)0.0494 (10)
H9A0.32230.47120.50560.059*
C100.7010 (10)0.4725 (3)0.52650 (10)0.0656 (14)
H10B0.70410.39250.53060.079*
H10C0.86680.49410.51370.079*
C110.6747 (9)0.5273 (3)0.57162 (11)0.0556 (12)
C120.4889 (9)0.4893 (3)0.60132 (11)0.0549 (11)
H12C0.38450.42880.59410.066*
C130.4594 (10)0.5421 (3)0.64204 (11)0.0518 (11)
C140.6091 (10)0.6318 (3)0.65279 (11)0.0532 (11)
C150.7953 (11)0.6697 (3)0.62395 (12)0.0658 (12)
H15B0.89900.73040.63130.079*
C160.8261 (11)0.6157 (4)0.58344 (12)0.0634 (13)
H16A0.95350.64060.56390.076*
C170.9001 (11)0.5584 (4)0.28192 (12)0.0683 (13)
H17B1.01870.57460.25820.102*
H17C0.99680.53930.30810.102*
H17D0.79430.62250.28780.102*
C180.5765 (13)0.3217 (3)0.45129 (11)0.0801 (16)
H18C0.58970.29080.42200.120*
H18D0.43420.28730.46670.120*
H18E0.73550.30830.46720.120*
C190.4509 (15)0.6260 (3)0.48960 (12)0.0877 (18)
H19D0.42390.65730.51850.131*
H19E0.30300.64190.47120.131*
H19F0.60430.65800.47660.131*
C200.1181 (10)0.4196 (4)0.66747 (13)0.0668 (13)
H20B0.01490.40720.69360.100*
H20C0.21810.35410.66110.100*
H20D0.00580.43580.64290.100*
U11U22U33U12U13U23
O10.069 (2)0.0660 (18)0.0537 (14)−0.0157 (19)0.0004 (17)−0.0018 (13)
O20.084 (3)0.086 (2)0.0494 (16)−0.026 (2)−0.0004 (17)−0.0086 (14)
O130.078 (2)0.082 (2)0.0511 (14)−0.022 (2)0.0105 (16)−0.0045 (14)
O140.090 (3)0.070 (2)0.0543 (16)−0.020 (2)0.0049 (18)−0.0109 (14)
C10.049 (3)0.054 (2)0.045 (2)−0.002 (2)−0.008 (2)0.0090 (18)
C20.055 (3)0.053 (2)0.044 (2)0.001 (3)−0.008 (2)0.0010 (18)
C30.057 (3)0.064 (3)0.063 (2)−0.011 (3)−0.008 (2)0.004 (2)
C40.049 (3)0.080 (3)0.056 (2)−0.006 (3)−0.007 (2)0.008 (2)
C50.046 (3)0.069 (3)0.047 (2)0.013 (3)−0.005 (2)−0.002 (2)
C60.049 (3)0.061 (3)0.052 (2)0.002 (3)−0.007 (2)0.0010 (19)
C70.050 (3)0.101 (3)0.052 (2)0.011 (3)−0.004 (2)−0.006 (2)
C80.047 (3)0.063 (3)0.0448 (19)−0.004 (3)0.008 (2)0.0034 (18)
C90.045 (2)0.058 (2)0.0451 (19)0.003 (3)0.004 (2)0.0060 (17)
C100.066 (3)0.084 (3)0.047 (2)0.015 (3)0.001 (2)0.000 (2)
C110.055 (3)0.067 (3)0.045 (2)0.010 (3)−0.004 (2)0.005 (2)
C120.059 (3)0.055 (2)0.051 (2)0.001 (3)−0.009 (2)−0.0018 (19)
C130.052 (3)0.059 (2)0.044 (2)0.002 (3)−0.003 (2)0.0064 (19)
C140.067 (3)0.045 (2)0.048 (2)0.002 (3)−0.002 (2)0.0045 (19)
C150.075 (3)0.063 (3)0.060 (2)−0.010 (3)−0.001 (3)0.009 (2)
C160.064 (3)0.076 (3)0.051 (2)−0.007 (3)0.006 (2)0.013 (2)
C170.072 (4)0.067 (3)0.066 (2)−0.016 (3)−0.007 (3)0.012 (2)
C180.116 (5)0.066 (3)0.058 (2)0.016 (4)0.002 (3)−0.004 (2)
C190.122 (5)0.068 (3)0.073 (3)0.025 (4)−0.026 (3)−0.005 (2)
C200.059 (3)0.069 (3)0.073 (3)−0.014 (3)−0.001 (3)0.008 (2)
O1—C11.371 (5)C9—H9A0.9800
O1—C171.420 (5)C10—C111.518 (5)
O2—C21.386 (5)C10—H10B0.9700
O2—H20.84 (2)C10—H10C0.9700
O13—C131.376 (5)C11—C161.364 (6)
O13—C201.414 (5)C11—C121.386 (6)
O14—C141.378 (5)C12—C131.391 (5)
O14—H140.86 (2)C12—H12C0.9300
C1—C21.375 (6)C13—C141.363 (6)
C1—C61.384 (5)C14—C151.371 (6)
C2—C31.367 (6)C15—C161.393 (5)
C3—C41.396 (5)C15—H15B0.9300
C3—H3A0.9300C16—H16A0.9300
C4—C51.368 (6)C17—H17B0.9600
C4—H4A0.9300C17—H17C0.9600
C5—C61.380 (6)C17—H17D0.9600
C5—C71.526 (5)C18—H18C0.9600
C6—H6A0.9300C18—H18D0.9600
C7—C81.529 (6)C18—H18E0.9600
C7—H7A0.9700C19—H19D0.9600
C7—H7B0.9700C19—H19E0.9600
C8—C181.512 (6)C19—H19F0.9600
C8—C91.542 (5)C20—H20B0.9600
C8—H8B0.9800C20—H20C0.9600
C9—C191.516 (5)C20—H20D0.9600
C9—C101.529 (6)
C1—O1—C17118.3 (3)C9—C10—H10C108.6
C2—O2—H2102 (4)H10B—C10—H10C107.5
C13—O13—C20119.9 (3)C16—C11—C12118.7 (4)
C14—O14—H14101 (3)C16—C11—C10121.4 (4)
O1—C1—C2114.8 (3)C12—C11—C10119.8 (4)
O1—C1—C6126.0 (4)C11—C12—C13119.6 (4)
C2—C1—C6119.2 (4)C11—C12—H12C120.2
C3—C2—C1121.1 (4)C13—C12—H12C120.2
C3—C2—O2118.2 (4)C14—C13—O13114.2 (3)
C1—C2—O2120.7 (4)C14—C13—C12120.7 (4)
C2—C3—C4119.0 (4)O13—C13—C12125.1 (4)
C2—C3—H3A120.5C13—C14—C15120.4 (4)
C4—C3—H3A120.5C13—C14—O14121.3 (4)
C5—C4—C3120.8 (4)C15—C14—O14118.3 (4)
C5—C4—H4A119.6C14—C15—C16118.7 (4)
C3—C4—H4A119.6C14—C15—H15B120.6
C4—C5—C6119.2 (3)C16—C15—H15B120.6
C4—C5—C7121.3 (4)C11—C16—C15121.8 (4)
C6—C5—C7119.4 (4)C11—C16—H16A119.1
C5—C6—C1120.7 (4)C15—C16—H16A119.1
C5—C6—H6A119.7O1—C17—H17B109.5
C1—C6—H6A119.7O1—C17—H17C109.5
C5—C7—C8114.3 (4)H17B—C17—H17C109.5
C5—C7—H7A108.7O1—C17—H17D109.5
C8—C7—H7A108.7H17B—C17—H17D109.5
C5—C7—H7B108.7H17C—C17—H17D109.5
C8—C7—H7B108.7C8—C18—H18C109.5
H7A—C7—H7B107.6C8—C18—H18D109.5
C18—C8—C7110.8 (4)H18C—C18—H18D109.5
C18—C8—C9113.2 (3)C8—C18—H18E109.5
C7—C8—C9110.7 (4)H18C—C18—H18E109.5
C18—C8—H8B107.3H18D—C18—H18E109.5
C7—C8—H8B107.3C9—C19—H19D109.5
C9—C8—H8B107.3C9—C19—H19E109.5
C19—C9—C10111.0 (4)H19D—C19—H19E109.5
C19—C9—C8112.1 (3)C9—C19—H19F109.5
C10—C9—C8111.9 (3)H19D—C19—H19F109.5
C19—C9—H9A107.2H19E—C19—H19F109.5
C10—C9—H9A107.2O13—C20—H20B109.5
C8—C9—H9A107.2O13—C20—H20C109.5
C11—C10—C9114.9 (4)H20B—C20—H20C109.5
C11—C10—H10B108.6O13—C20—H20D109.5
C9—C10—H10B108.6H20B—C20—H20D109.5
C11—C10—H10C108.6H20C—C20—H20D109.5
C17—O1—C1—C2177.9 (4)C18—C8—C9—C1051.8 (6)
C17—O1—C1—C6−1.7 (6)C7—C8—C9—C10176.9 (3)
O1—C1—C2—C3−179.1 (4)C19—C9—C10—C1152.1 (5)
C6—C1—C2—C30.6 (6)C8—C9—C10—C11178.2 (4)
O1—C1—C2—O2−0.6 (6)C9—C10—C11—C16−104.1 (5)
C6—C1—C2—O2179.0 (4)C9—C10—C11—C1274.2 (5)
C1—C2—C3—C4−0.5 (6)C16—C11—C12—C130.5 (6)
O2—C2—C3—C4−178.9 (4)C10—C11—C12—C13−177.8 (4)
C2—C3—C4—C5−0.6 (6)C20—O13—C13—C14178.9 (4)
C3—C4—C5—C61.5 (6)C20—O13—C13—C12−2.3 (6)
C3—C4—C5—C7179.7 (4)C11—C12—C13—C140.8 (6)
C4—C5—C6—C1−1.4 (6)C11—C12—C13—O13−177.9 (4)
C7—C5—C6—C1−179.6 (4)O13—C13—C14—C15177.5 (4)
O1—C1—C6—C5179.9 (4)C12—C13—C14—C15−1.5 (6)
C2—C1—C6—C50.3 (6)O13—C13—C14—O14−1.1 (6)
C4—C5—C7—C8112.6 (5)C12—C13—C14—O14−180.0 (4)
C6—C5—C7—C8−69.3 (5)C13—C14—C15—C160.7 (7)
C5—C7—C8—C18−56.9 (5)O14—C14—C15—C16179.2 (4)
C5—C7—C8—C9176.7 (3)C12—C11—C16—C15−1.3 (6)
C18—C8—C9—C19177.3 (5)C10—C11—C16—C15177.0 (4)
C7—C8—C9—C19−57.6 (6)C14—C15—C16—C110.7 (7)
D—H···AD—HH···AD···AD—H···A
O2—H2···O14i0.84 (2)2.15 (3)2.908 (6)149 (5)
O14—H14···O2ii0.86 (2)2.35 (4)3.030 (5)137 (5)
O2—H2···O10.84 (2)2.14 (5)2.658 (4)119 (5)
O14—H14···O130.86 (2)2.07 (4)2.644 (5)124 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O14i0.84 (2)2.15 (3)2.908 (6)149 (5)
O14—H14⋯O2ii0.86 (2)2.35 (4)3.030 (5)137 (5)

Symmetry codes: (i) ; (ii) .

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