Literature DB >> 21583129

3-Chloro-N-cyclo-hexyl-benzamide.

M Khawar Rauf, Michael Bolte, Amin Badshah.   

Abstract

In the title mol-ecule, C(13)H(16)ClNO, the mean plane of the atoms in the -CONH- group forms a dihedral angle of 42.0 (4)° with the benzene ring plane. In the crystal structure, mol-ecules are linked by inter-molecular N-H⋯O hydrogen bonds, generating C(4) chains along [100].

Entities:  

Year:  2009        PMID: 21583129      PMCID: PMC2969806          DOI: 10.1107/S1600536809017012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen (2002 ▶). For related structures, see: Garden et al. (2005 ▶); Wardell et al. (2005 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H16ClNO M = 237.72 Orthorhombic, a = 8.4963 (6) Å b = 11.4891 (7) Å c = 12.5318 (11) Å V = 1223.29 (16) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.38 × 0.22 × 0.22 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan [MULABS (Spek, 2003 ▶; Blessing, 1995 ▶)] T min = 0.898, T max = 0.939 6758 measured reflections 2737 independent reflections 2429 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.069 S = 0.98 2737 reflections 150 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 1128 Friedel pairs Flack parameter: 0.03 (5) Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809017012/lh2817sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017012/lh2817Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16ClNOF(000) = 504
Mr = 237.72Dx = 1.291 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6652 reflections
a = 8.4963 (6) Åθ = 3.4–27.7°
b = 11.4891 (7) ŵ = 0.29 mm1
c = 12.5318 (11) ÅT = 173 K
V = 1223.29 (16) Å3Block, colourless
Z = 40.38 × 0.22 × 0.22 mm
Stoe IPDS II two-circle diffractometer2737 independent reflections
Radiation source: fine-focus sealed tube2429 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan [MULABS (Spek, 2003; Blessing, 1995)]h = −11→11
Tmin = 0.898, Tmax = 0.939k = −14→11
6758 measured reflectionsl = −16→13
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0419P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.069(Δ/σ)max = 0.001
S = 0.98Δρmax = 0.18 e Å3
2737 reflectionsΔρmin = −0.17 e Å3
150 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.021 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1128 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.03 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.70767 (6)1.17100 (4)0.53982 (4)0.04673 (13)
C10.54914 (14)0.73267 (12)0.53979 (11)0.0203 (3)
O10.43572 (10)0.67397 (9)0.56950 (7)0.0245 (2)
N10.63351 (13)0.70808 (10)0.45221 (9)0.0233 (2)
H10.720 (2)0.7470 (16)0.4421 (13)0.028 (4)*
C110.59541 (13)0.84022 (13)0.60027 (10)0.0208 (3)
C120.63710 (15)0.94177 (12)0.54747 (11)0.0233 (3)
H120.64740.94250.47200.028*
C130.66355 (15)1.04213 (13)0.60606 (11)0.0260 (3)
C140.65300 (16)1.04247 (14)0.71660 (12)0.0289 (3)
H140.67271.11170.75580.035*
C150.61351 (17)0.94075 (15)0.76869 (12)0.0300 (3)
H150.60690.93990.84440.036*
C160.58335 (14)0.83946 (14)0.71154 (11)0.0253 (3)
H160.55470.77010.74790.030*
C210.59346 (14)0.61160 (13)0.38088 (11)0.0218 (3)
H210.47780.59660.38680.026*
C220.62972 (17)0.64688 (13)0.26615 (11)0.0274 (3)
H22A0.74310.66540.25940.033*
H22B0.56900.71760.24760.033*
C230.58727 (17)0.54859 (16)0.18917 (12)0.0334 (4)
H23A0.47220.53530.19110.040*
H23B0.61610.57170.11560.040*
C240.67181 (18)0.43660 (15)0.21786 (13)0.0340 (3)
H24A0.78650.44710.20800.041*
H24B0.63670.37350.16960.041*
C250.6385 (2)0.40235 (15)0.33291 (14)0.0373 (4)
H25A0.70050.33220.35110.045*
H25B0.52550.38270.34050.045*
C260.68006 (17)0.50066 (13)0.41084 (12)0.0292 (3)
H26A0.65080.47740.48430.035*
H26B0.79500.51480.40920.035*
U11U22U33U12U13U23
Cl10.0806 (3)0.02269 (18)0.0369 (2)−0.00841 (19)−0.0039 (2)0.00076 (18)
C10.0225 (5)0.0208 (7)0.0176 (5)0.0040 (5)−0.0026 (5)0.0014 (6)
O10.0244 (4)0.0256 (5)0.0236 (5)−0.0026 (4)0.0023 (3)0.0014 (4)
N10.0236 (5)0.0234 (6)0.0227 (5)−0.0043 (4)0.0028 (4)−0.0057 (5)
C110.0203 (5)0.0220 (7)0.0202 (6)0.0036 (5)−0.0005 (4)−0.0031 (6)
C120.0267 (5)0.0245 (7)0.0188 (6)0.0028 (5)−0.0008 (5)−0.0020 (6)
C130.0304 (6)0.0213 (7)0.0261 (7)0.0022 (5)−0.0023 (5)−0.0004 (6)
C140.0312 (6)0.0291 (8)0.0264 (7)0.0030 (6)−0.0031 (5)−0.0095 (6)
C150.0318 (7)0.0391 (9)0.0190 (6)0.0012 (6)−0.0012 (5)−0.0058 (6)
C160.0273 (6)0.0292 (8)0.0195 (6)0.0012 (5)0.0002 (5)0.0004 (6)
C210.0231 (6)0.0224 (7)0.0199 (6)−0.0027 (5)−0.0008 (5)−0.0054 (5)
C220.0355 (7)0.0253 (7)0.0214 (6)0.0044 (6)−0.0006 (5)0.0001 (6)
C230.0360 (7)0.0433 (10)0.0208 (7)0.0010 (7)−0.0008 (5)−0.0076 (7)
C240.0391 (8)0.0306 (8)0.0322 (7)−0.0025 (6)0.0058 (6)−0.0122 (7)
C250.0532 (9)0.0209 (8)0.0377 (9)−0.0028 (7)0.0057 (7)−0.0048 (7)
C260.0393 (7)0.0229 (8)0.0254 (7)−0.0008 (6)−0.0016 (6)0.0018 (6)
Cl1—C131.7383 (16)C21—C221.5253 (19)
C1—O11.2337 (16)C21—H211.0000
C1—N11.3410 (17)C22—C231.528 (2)
C1—C111.5020 (18)C22—H22A0.9900
N1—C211.4641 (17)C22—H22B0.9900
N1—H10.868 (18)C23—C241.517 (3)
C11—C121.387 (2)C23—H23A0.9900
C11—C161.3982 (18)C23—H23B0.9900
C12—C131.385 (2)C24—C251.521 (2)
C12—H120.9500C24—H24A0.9900
C13—C141.388 (2)C24—H24B0.9900
C14—C151.380 (2)C25—C261.534 (2)
C14—H140.9500C25—H25A0.9900
C15—C161.390 (2)C25—H25B0.9900
C15—H150.9500C26—H26A0.9900
C16—H160.9500C26—H26B0.9900
C21—C261.519 (2)
O1—C1—N1123.32 (13)C21—C22—C23110.54 (13)
O1—C1—C11120.12 (11)C21—C22—H22A109.5
N1—C1—C11116.52 (11)C23—C22—H22A109.5
C1—N1—C21122.34 (11)C21—C22—H22B109.5
C1—N1—H1117.6 (11)C23—C22—H22B109.5
C21—N1—H1119.8 (11)H22A—C22—H22B108.1
C12—C11—C16119.98 (13)C24—C23—C22111.43 (12)
C12—C11—C1121.20 (11)C24—C23—H23A109.3
C16—C11—C1118.62 (13)C22—C23—H23A109.3
C13—C12—C11119.25 (12)C24—C23—H23B109.3
C13—C12—H12120.4C22—C23—H23B109.3
C11—C12—H12120.4H23A—C23—H23B108.0
C12—C13—C14121.38 (14)C23—C24—C25110.85 (13)
C12—C13—Cl1119.39 (11)C23—C24—H24A109.5
C14—C13—Cl1119.22 (12)C25—C24—H24A109.5
C15—C14—C13119.04 (14)C23—C24—H24B109.5
C15—C14—H14120.5C25—C24—H24B109.5
C13—C14—H14120.5H24A—C24—H24B108.1
C14—C15—C16120.66 (13)C24—C25—C26111.71 (13)
C14—C15—H15119.7C24—C25—H25A109.3
C16—C15—H15119.7C26—C25—H25A109.3
C15—C16—C11119.67 (15)C24—C25—H25B109.3
C15—C16—H16120.2C26—C25—H25B109.3
C11—C16—H16120.2H25A—C25—H25B107.9
N1—C21—C26111.83 (11)C21—C26—C25110.41 (13)
N1—C21—C22109.11 (11)C21—C26—H26A109.6
C26—C21—C22110.99 (11)C25—C26—H26A109.6
N1—C21—H21108.3C21—C26—H26B109.6
C26—C21—H21108.3C25—C26—H26B109.6
C22—C21—H21108.3H26A—C26—H26B108.1
O1—C1—N1—C212.9 (2)C14—C15—C16—C110.9 (2)
C11—C1—N1—C21−174.88 (11)C12—C11—C16—C15−0.08 (19)
O1—C1—C11—C12−137.24 (12)C1—C11—C16—C15−174.93 (12)
N1—C1—C11—C1240.62 (17)C1—N1—C21—C26−92.52 (14)
O1—C1—C11—C1637.55 (17)C1—N1—C21—C22144.31 (12)
N1—C1—C11—C16−144.60 (12)N1—C21—C22—C23−179.27 (11)
C16—C11—C12—C13−1.17 (19)C26—C21—C22—C2357.06 (15)
C1—C11—C12—C13173.54 (11)C21—C22—C23—C24−56.47 (16)
C11—C12—C13—C141.6 (2)C22—C23—C24—C2555.47 (17)
C11—C12—C13—Cl1−177.30 (9)C23—C24—C25—C26−55.16 (18)
C12—C13—C14—C15−0.8 (2)N1—C21—C26—C25−178.62 (12)
Cl1—C13—C14—C15178.16 (10)C22—C21—C26—C25−56.52 (15)
C13—C14—C15—C16−0.5 (2)C24—C25—C26—C2155.74 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.868 (18)2.052 (18)2.9161 (15)173.3 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.868 (18)2.052 (18)2.9161 (15)173.3 (16)

Symmetry code: (i) .

  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  2-Iodo-N-(4-nitrophenyl)benzamide forms hydrogen-bonded sheets of R4(4)(24) rings.

Authors:  Simon J Garden; Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2005-06-22       Impact factor: 1.172

4.  Contrasting three-dimensional framework structures in the isomeric pair 2-iodo-N-(2-nitrophenyl)benzamide and N-(2-iodophenyl)-2-nitrobenzamide.

Authors:  James L Wardell; Janet M S Skakle; John N Low; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2005-10-11       Impact factor: 1.172

5.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

  5 in total

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