Literature DB >> 21583095

4,5,6-Tri-O-acetyl-2,3-di-S-ethyl-2,3-dithio-d-allose diethyl dithio-acetal.

Xiao-Dong Xi, Da-Xin Shi, Hui Li, Yun-Zheng Li, Qin-Pei Wu.   

Abstract

The title compound, C(20)H(36)O(6)S(4), was obtained by ethanethiol-ysis of 3,5,6-tri-O-acetyl-1,2-O-isopropyl-idene-α-d-gluco-furan--ose. One of the ethyl groups is disordered over two sites with refined occupancies of 0.869 (6) and 0.131 (6). Compared with the precursor, the absolute configuration of the stereocenters at positions C-3 and C-2 are inverted and maintained, respectively.

Entities:  

Year:  2009        PMID: 21583095      PMCID: PMC2969703          DOI: 10.1107/S1600536809015694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactiviy of nucleosides, see: Zhang et al. (2007 ▶); Merino et al. (2008 ▶). For the structure of the precursor, 3,5,6-tri-O-acetyl-1,2-O-isopropyl­idene-α-d-glucofuran­ose, see: Wu et al. (2009 ▶). For related structures, see: Bethel & Ferrier (1972 ▶); Berrang & Hortor (1970 ▶); Divjaković et al. (1992 ▶).

Experimental

Crystal data

C20H36O6S4 M = 500.73 Monoclinic, a = 8.3395 (12) Å b = 16.726 (2) Å c = 9.2027 (14) Å β = 95.772 (5)° V = 1277.2 (3) Å3 Z = 2 Mo Kα radiation μ = 0.40 mm−1 T = 113 K 0.26 × 0.20 × 0.18 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.902, T max = 0.931 16052 measured reflections 6060 independent reflections 5802 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.066 S = 1.04 6060 reflections 298 parameters 23 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 2919 Friedel pairs Flack parameter: −0.03 (4) Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809015694/lh2804sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015694/lh2804Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H36O6S4F(000) = 536
Mr = 500.73Dx = 1.302 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71070 Å
Hall symbol: P 2ybCell parameters from 4760 reflections
a = 8.3395 (12) Åθ = 2.2–27.9°
b = 16.726 (2) ŵ = 0.40 mm1
c = 9.2027 (14) ÅT = 113 K
β = 95.772 (5)°Block, colorless
V = 1277.2 (3) Å30.26 × 0.20 × 0.18 mm
Z = 2
Rigaku Saturn diffractometer6060 independent reflections
Radiation source: rotating anode5802 reflections with I > 2σ(I)
confocalRint = 0.032
Detector resolution: 14.63 pixels mm-1θmax = 27.9°, θmin = 2.2°
ω scansh = −10→10
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −21→22
Tmin = 0.902, Tmax = 0.931l = −12→12
16052 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.066w = 1/[σ2(Fo2) + (0.0326P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
6060 reflectionsΔρmax = 0.20 e Å3
298 parametersΔρmin = −0.29 e Å3
23 restraintsAbsolute structure: Flack (1983), 2919 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.03 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.74081 (5)−0.08494 (3)0.79166 (5)0.02103 (10)
S20.70511 (5)0.08746 (3)0.88989 (5)0.02203 (10)
S30.41930 (5)0.00547 (3)0.66199 (5)0.01940 (10)
S40.85901 (5)0.02564 (3)0.42590 (5)0.02148 (10)
O10.56270 (15)−0.06561 (7)0.23706 (13)0.0182 (3)
O20.32000 (18)−0.12020 (10)0.25917 (18)0.0405 (4)
O30.54225 (14)0.14186 (7)0.33931 (12)0.0169 (3)
O40.68402 (15)0.21225 (8)0.18563 (14)0.0269 (3)
O50.25647 (13)0.10093 (8)0.19236 (13)0.0209 (3)
O60.26208 (18)0.22570 (8)0.10243 (18)0.0378 (4)
C10.74322 (19)0.02080 (11)0.74033 (17)0.0171 (3)
H10.85210.03360.70990.021*
C20.61765 (18)0.03465 (11)0.60845 (18)0.0156 (3)
H20.61430.09330.58730.019*
C30.66042 (18)−0.00888 (10)0.46908 (17)0.0147 (3)
H30.6708−0.06700.49330.018*
C40.53286 (19)−0.00125 (11)0.33657 (17)0.0148 (3)
H40.4224−0.00680.36890.018*
C50.5413 (2)0.07353 (10)0.24304 (18)0.0164 (4)
H50.64400.07270.19570.020*
C60.3999 (2)0.08169 (12)0.12490 (18)0.0202 (4)
H6A0.42270.12440.05540.024*
H6B0.38430.03090.07000.024*
C70.8968 (2)−0.08772 (14)0.94224 (19)0.0284 (4)
H7A0.8763−0.04441.01120.034*
H7B0.8888−0.13910.99440.034*
C81.0684 (2)−0.07889 (15)0.9010 (3)0.0398 (5)
H8A1.0926−0.12300.83660.060*
H8B1.1441−0.08010.98960.060*
H8C1.0788−0.02790.85030.060*
C90.8906 (2)0.14400 (14)0.9124 (2)0.0311 (5)
H9A0.89240.17591.00310.037*
H9B0.98210.10610.92470.037*
C100.9154 (3)0.19954 (14)0.7876 (3)0.0395 (5)
H10A0.92220.16830.69840.059*
H10B1.01550.22970.81040.059*
H10C0.82450.23680.77290.059*
C110.2932 (2)0.08823 (13)0.59307 (19)0.0237 (4)
H11A0.31060.09750.48960.028*
H11B0.17890.07300.59620.028*
C120.3242 (2)0.16570 (13)0.6765 (2)0.0302 (5)
H12A0.29850.15850.77730.045*
H12B0.25610.20800.62960.045*
H12C0.43780.18060.67660.045*
C130.9482 (3)−0.06248 (16)0.3541 (3)0.0317 (8)0.869 (6)
H13A0.8677−0.08830.28260.038*0.869 (6)
H13B1.0406−0.04610.30130.038*0.869 (6)
C141.0059 (4)−0.1230 (2)0.4699 (3)0.0428 (9)0.869 (6)
H14A1.0905−0.09910.53780.064*0.869 (6)
H14B1.0490−0.17000.42330.064*0.869 (6)
H14C0.9154−0.13920.52350.064*0.869 (6)
C13'0.9867 (15)−0.0625 (8)0.4615 (17)0.024 (5)0.131 (6)
H13C1.0967−0.04880.43790.029*0.131 (6)
H13D0.9937−0.07410.56740.029*0.131 (6)
C14'0.935 (2)−0.1377 (8)0.381 (2)0.036 (4)0.131 (6)
H14D0.8573−0.16650.43390.054*0.131 (6)
H14E1.0297−0.17170.37220.054*0.131 (6)
H14F0.8855−0.12400.28270.054*0.131 (6)
C150.4443 (2)−0.12014 (11)0.20382 (19)0.0200 (4)
C160.4899 (3)−0.17588 (12)0.0885 (2)0.0277 (4)
H16A0.4155−0.22140.08050.042*
H16B0.6000−0.19520.11430.042*
H16C0.4843−0.1477−0.00530.042*
C170.6157 (2)0.20907 (11)0.2941 (2)0.0209 (4)
C180.5959 (3)0.27634 (12)0.3979 (2)0.0326 (5)
H18A0.64850.32440.36440.049*
H18B0.64540.26170.49540.049*
H18C0.48100.28710.40210.049*
C190.2065 (2)0.17773 (11)0.1783 (2)0.0221 (4)
C200.0766 (2)0.19526 (13)0.2743 (2)0.0301 (5)
H20A0.12460.20330.37480.045*
H20B0.00120.15020.27120.045*
H20C0.01870.24370.23970.045*
U11U22U33U12U13U23
S10.0232 (2)0.0209 (2)0.0183 (2)−0.00083 (19)−0.00179 (18)0.00364 (18)
S20.0236 (2)0.0275 (2)0.0155 (2)−0.00207 (19)0.00384 (17)−0.00323 (19)
S30.0155 (2)0.0251 (2)0.0183 (2)−0.00173 (18)0.00489 (16)0.00091 (18)
S40.01363 (19)0.0294 (3)0.0218 (2)−0.00129 (18)0.00362 (16)0.00257 (19)
O10.0183 (6)0.0201 (7)0.0166 (6)−0.0007 (5)0.0034 (5)−0.0072 (5)
O20.0312 (8)0.0411 (9)0.0523 (10)−0.0176 (7)0.0194 (7)−0.0234 (8)
O30.0213 (6)0.0138 (6)0.0157 (6)−0.0013 (5)0.0026 (5)0.0002 (5)
O40.0221 (7)0.0292 (8)0.0298 (7)−0.0023 (6)0.0050 (6)0.0102 (6)
O50.0175 (6)0.0194 (7)0.0253 (7)0.0012 (5)−0.0005 (5)0.0021 (5)
O60.0368 (8)0.0244 (8)0.0556 (10)0.0038 (6)0.0209 (8)0.0118 (7)
C10.0174 (8)0.0212 (9)0.0128 (8)−0.0003 (7)0.0018 (6)−0.0010 (7)
C20.0128 (8)0.0171 (8)0.0167 (8)−0.0016 (7)0.0006 (6)−0.0001 (6)
C30.0146 (8)0.0165 (9)0.0133 (8)0.0000 (7)0.0028 (6)0.0000 (7)
C40.0153 (8)0.0159 (8)0.0132 (8)0.0026 (7)0.0009 (6)−0.0056 (7)
C50.0152 (8)0.0166 (9)0.0172 (9)0.0016 (7)0.0016 (6)−0.0023 (7)
C60.0209 (9)0.0257 (10)0.0138 (8)0.0023 (8)0.0011 (7)−0.0024 (7)
C70.0352 (10)0.0305 (11)0.0176 (9)0.0017 (9)−0.0064 (8)0.0041 (9)
C80.0276 (11)0.0400 (13)0.0482 (14)0.0029 (10)−0.0139 (9)0.0012 (11)
C90.0263 (10)0.0344 (12)0.0317 (11)−0.0028 (9)−0.0008 (8)−0.0138 (9)
C100.0338 (11)0.0283 (12)0.0586 (15)−0.0064 (10)0.0160 (11)−0.0079 (11)
C110.0174 (8)0.0356 (11)0.0182 (9)0.0039 (8)0.0029 (7)0.0010 (9)
C120.0293 (11)0.0346 (12)0.0271 (11)0.0066 (9)0.0041 (8)−0.0036 (9)
C130.0213 (12)0.0515 (18)0.0234 (15)0.0072 (11)0.0073 (10)−0.0077 (11)
C140.0442 (17)0.046 (2)0.0393 (18)0.0195 (14)0.0118 (13)−0.0025 (14)
C13'0.007 (7)0.045 (12)0.022 (10)−0.005 (6)0.004 (6)0.002 (7)
C14'0.032 (7)0.024 (7)0.050 (8)0.010 (6)−0.009 (6)−0.005 (6)
C150.0265 (10)0.0197 (9)0.0138 (9)−0.0023 (8)0.0025 (7)−0.0008 (7)
C160.0377 (11)0.0240 (10)0.0222 (10)−0.0048 (9)0.0067 (8)−0.0076 (8)
C170.0155 (8)0.0178 (9)0.0281 (10)0.0003 (7)−0.0037 (7)0.0074 (8)
C180.0386 (12)0.0200 (10)0.0382 (13)−0.0062 (9)−0.0003 (10)−0.0018 (8)
C190.0166 (8)0.0230 (10)0.0253 (10)0.0003 (8)−0.0043 (7)0.0008 (8)
C200.0242 (10)0.0332 (12)0.0329 (12)0.0057 (9)0.0033 (8)0.0084 (9)
S1—C71.8035 (18)C9—C101.507 (3)
S1—C11.8313 (19)C9—H9A0.9900
S2—C91.807 (2)C9—H9B0.9900
S2—C11.8238 (17)C10—H10A0.9800
S3—C111.814 (2)C10—H10B0.9800
S3—C21.8387 (16)C10—H10C0.9800
S4—C131.806 (2)C11—C121.515 (3)
S4—C13'1.829 (13)C11—H11A0.9900
S4—C31.8348 (16)C11—H11B0.9900
O1—C151.357 (2)C12—H12A0.9800
O1—C41.4510 (19)C12—H12B0.9800
O2—C151.200 (2)C12—H12C0.9800
O3—C171.365 (2)C13—C141.513 (4)
O3—C51.446 (2)C13—H13A0.9900
O4—C171.199 (2)C13—H13B0.9900
O5—C191.352 (2)C14—H14A0.9800
O5—C61.439 (2)C14—H14B0.9800
O6—C191.188 (2)C14—H14C0.9800
C1—C21.539 (2)C13'—C14'1.502 (19)
C1—H11.0000C13'—H13C0.9900
C2—C31.547 (2)C13'—H13D0.9900
C2—H21.0000C14'—H14D0.9800
C3—C41.541 (2)C14'—H14E0.9800
C3—H31.0000C14'—H14F0.9800
C4—C51.524 (2)C15—C161.491 (2)
C4—H41.0000C16—H16A0.9800
C5—C61.527 (2)C16—H16B0.9800
C5—H51.0000C16—H16C0.9800
C6—H6A0.9900C17—C181.496 (3)
C6—H6B0.9900C18—H18A0.9800
C7—C81.524 (3)C18—H18B0.9800
C7—H7A0.9900C18—H18C0.9800
C7—H7B0.9900C19—C201.495 (3)
C8—H8A0.9800C20—H20A0.9800
C8—H8B0.9800C20—H20B0.9800
C8—H8C0.9800C20—H20C0.9800
C7—S1—C1101.38 (9)C9—C10—H10A109.5
C9—S2—C1101.20 (9)C9—C10—H10B109.5
C11—S3—C2102.08 (8)H10A—C10—H10B109.5
C13—S4—C13'32.2 (5)C9—C10—H10C109.5
C13—S4—C3103.66 (10)H10A—C10—H10C109.5
C13'—S4—C3103.3 (4)H10B—C10—H10C109.5
C15—O1—C4118.30 (13)C12—C11—S3114.35 (13)
C17—O3—C5116.06 (13)C12—C11—H11A108.7
C19—O5—C6115.63 (14)S3—C11—H11A108.7
C2—C1—S2110.29 (11)C12—C11—H11B108.7
C2—C1—S1108.94 (11)S3—C11—H11B108.7
S2—C1—S1112.86 (9)H11A—C11—H11B107.6
C2—C1—H1108.2C11—C12—H12A109.5
S2—C1—H1108.2C11—C12—H12B109.5
S1—C1—H1108.2H12A—C12—H12B109.5
C1—C2—C3112.81 (13)C11—C12—H12C109.5
C1—C2—S3107.93 (11)H12A—C12—H12C109.5
C3—C2—S3112.69 (11)H12B—C12—H12C109.5
C1—C2—H2107.7C14—C13—S4113.70 (19)
C3—C2—H2107.7C14—C13—H13A108.8
S3—C2—H2107.7S4—C13—H13A108.8
C4—C3—C2114.75 (13)C14—C13—H13B108.8
C4—C3—S4111.65 (11)S4—C13—H13B108.8
C2—C3—S4108.65 (11)H13A—C13—H13B107.7
C4—C3—H3107.1C14'—C13'—S4117.0 (11)
C2—C3—H3107.1C14'—C13'—H13C108.0
S4—C3—H3107.1S4—C13'—H13C108.0
O1—C4—C5103.41 (12)C14'—C13'—H13D108.0
O1—C4—C3106.83 (13)S4—C13'—H13D108.0
C5—C4—C3116.60 (14)H13C—C13'—H13D107.3
O1—C4—H4109.9C13'—C14'—H14D109.5
C5—C4—H4109.9C13'—C14'—H14E109.5
C3—C4—H4109.9H14D—C14'—H14E109.5
O3—C5—C4107.49 (13)C13'—C14'—H14F109.5
O3—C5—C6108.79 (13)H14D—C14'—H14F109.5
C4—C5—C6113.55 (14)H14E—C14'—H14F109.5
O3—C5—H5109.0O2—C15—O1123.03 (17)
C4—C5—H5109.0O2—C15—C16126.52 (18)
C6—C5—H5109.0O1—C15—C16110.42 (15)
O5—C6—C5109.18 (13)C15—C16—H16A109.5
O5—C6—H6A109.8C15—C16—H16B109.5
C5—C6—H6A109.8H16A—C16—H16B109.5
O5—C6—H6B109.8C15—C16—H16C109.5
C5—C6—H6B109.8H16A—C16—H16C109.5
H6A—C6—H6B108.3H16B—C16—H16C109.5
C8—C7—S1115.40 (14)O4—C17—O3123.77 (18)
C8—C7—H7A108.4O4—C17—C18126.18 (18)
S1—C7—H7A108.4O3—C17—C18110.05 (15)
C8—C7—H7B108.4C17—C18—H18A109.5
S1—C7—H7B108.4C17—C18—H18B109.5
H7A—C7—H7B107.5H18A—C18—H18B109.5
C7—C8—H8A109.5C17—C18—H18C109.5
C7—C8—H8B109.5H18A—C18—H18C109.5
H8A—C8—H8B109.5H18B—C18—H18C109.5
C7—C8—H8C109.5O6—C19—O5124.29 (17)
H8A—C8—H8C109.5O6—C19—C20124.31 (18)
H8B—C8—H8C109.5O5—C19—C20111.37 (16)
C10—C9—S2114.64 (15)C19—C20—H20A109.5
C10—C9—H9A108.6C19—C20—H20B109.5
S2—C9—H9A108.6H20A—C20—H20B109.5
C10—C9—H9B108.6C19—C20—H20C109.5
S2—C9—H9B108.6H20A—C20—H20C109.5
H9A—C9—H9B107.6H20B—C20—H20C109.5
C9—S2—C1—C2−119.35 (13)S4—C3—C4—C5−39.69 (17)
C9—S2—C1—S1118.55 (11)C17—O3—C5—C4153.04 (14)
C7—S1—C1—C2178.77 (11)C17—O3—C5—C6−83.62 (17)
C7—S1—C1—S2−58.37 (11)O1—C4—C5—O3−169.73 (12)
S2—C1—C2—C3169.79 (11)C3—C4—C5—O3−52.85 (18)
S1—C1—C2—C3−65.83 (15)O1—C4—C5—C669.89 (16)
S2—C1—C2—S3−65.04 (13)C3—C4—C5—C6−173.23 (13)
S1—C1—C2—S359.34 (13)C19—O5—C6—C5104.90 (17)
C11—S3—C2—C1134.39 (12)O3—C5—C6—O5−48.42 (19)
C11—S3—C2—C3−100.37 (12)C4—C5—C6—O571.22 (18)
C1—C2—C3—C4176.29 (14)C1—S1—C7—C8−71.74 (18)
S3—C2—C3—C453.74 (17)C1—S2—C9—C1068.51 (17)
C1—C2—C3—S4−57.96 (16)C2—S3—C11—C12−71.05 (15)
S3—C2—C3—S4179.49 (9)C13'—S4—C13—C1418.1 (8)
C13—S4—C3—C4−87.95 (15)C3—S4—C13—C14−75.1 (2)
C13'—S4—C3—C4−121.1 (5)C13—S4—C13'—C14'−38.2 (11)
C13—S4—C3—C2144.51 (13)C3—S4—C13'—C14'56.4 (13)
C13'—S4—C3—C2111.4 (5)C4—O1—C15—O2−4.4 (3)
C15—O1—C4—C5−116.96 (15)C4—O1—C15—C16173.80 (15)
C15—O1—C4—C3119.46 (15)C5—O3—C17—O4−3.9 (2)
C2—C3—C4—O1−160.52 (13)C5—O3—C17—C18175.50 (14)
S4—C3—C4—O175.30 (15)C6—O5—C19—O68.6 (3)
C2—C3—C4—C584.49 (17)C6—O5—C19—C20−169.42 (14)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Current developments in the synthesis and biological activity of aza-C-nucleosides: immucillins and related compounds.

Authors:  Pedro Merino; Tomas Tejero; Ignacio Delso
Journal:  Curr Med Chem       Date:  2008       Impact factor: 4.530

Review 3.  The role of nucleoside transporters in cancer chemotherapy with nucleoside drugs.

Authors:  Jing Zhang; Frank Visser; Karen M King; Stephen A Baldwin; James D Young; Carol E Cass
Journal:  Cancer Metastasis Rev       Date:  2007-03       Impact factor: 9.264

  3 in total

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