| Literature DB >> 21583080 |
Abstract
The title compound, C(12)H(15)ClN(2)O, is a piperazine derivative with the potential for use as a starting material for pharmaceutial and agrochemical applications. The structure is stabilized by C-H⋯O hydrogen bonds, C-H⋯π inter-actions and π-π stacking inter-actions [centroid-centroid distance = is 4.760 (2) Å].Entities:
Year: 2009 PMID: 21583080 PMCID: PMC2969821 DOI: 10.1107/S1600536809008216
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H15ClN2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3260 reflections |
| θ = 3.2–27.9° | |
| µ = 0.31 mm−1 | |
| β = 101.34 (3)° | Block, colourless |
| 0.20 × 0.18 × 0.12 mm | |
| Rigaku Saturn diffractometer | 2729 independent reflections |
| Radiation source: rotating anode | 2151 reflections with |
| confocal | |
| ω scans | θmax = 27.9°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 9264 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2729 reflections | (Δ/σ)max = 0.001 |
| 145 parameters | Δρmax = 0.25 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.62862 (4) | 0.03256 (4) | 0.08928 (2) | 0.03631 (13) | |
| O1 | 0.58185 (10) | −0.16571 (10) | 0.24044 (7) | 0.0297 (2) | |
| N1 | 0.75320 (11) | 0.03812 (12) | 0.56187 (8) | 0.0237 (2) | |
| N2 | 0.66086 (12) | −0.00754 (12) | 0.36497 (8) | 0.0244 (2) | |
| C1 | 0.82553 (13) | 0.04592 (14) | 0.65699 (10) | 0.0230 (3) | |
| C2 | 0.76046 (14) | −0.02277 (14) | 0.72590 (10) | 0.0276 (3) | |
| H2 | 0.6724 | −0.0739 | 0.7082 | 0.033* | |
| C3 | 0.82561 (16) | −0.01541 (15) | 0.81981 (11) | 0.0312 (3) | |
| H3 | 0.7815 | −0.0627 | 0.8646 | 0.037* | |
| C4 | 0.95649 (16) | 0.06196 (16) | 0.84812 (10) | 0.0311 (3) | |
| H4 | 1.0004 | 0.0664 | 0.9113 | 0.037* | |
| C5 | 1.02012 (14) | 0.13211 (15) | 0.78058 (10) | 0.0299 (3) | |
| H5 | 1.1069 | 0.1854 | 0.7989 | 0.036* | |
| C6 | 0.95647 (13) | 0.12419 (15) | 0.68604 (10) | 0.0253 (3) | |
| H6 | 1.0013 | 0.1714 | 0.6416 | 0.030* | |
| C7 | 0.80673 (14) | 0.13837 (14) | 0.49496 (10) | 0.0256 (3) | |
| H7A | 0.8961 | 0.0961 | 0.4821 | 0.031* | |
| H7B | 0.8263 | 0.2419 | 0.5215 | 0.031* | |
| C8 | 0.69545 (14) | 0.14856 (14) | 0.40466 (10) | 0.0266 (3) | |
| H8A | 0.6084 | 0.1975 | 0.4170 | 0.032* | |
| H8B | 0.7325 | 0.2128 | 0.3597 | 0.032* | |
| C9 | 0.61886 (13) | −0.11941 (14) | 0.43097 (10) | 0.0250 (3) | |
| H9A | 0.6128 | −0.2231 | 0.4035 | 0.030* | |
| H9B | 0.5242 | −0.0921 | 0.4425 | 0.030* | |
| C10 | 0.72706 (13) | −0.12050 (14) | 0.52343 (10) | 0.0256 (3) | |
| H10A | 0.6908 | −0.1857 | 0.5683 | 0.031* | |
| H10B | 0.8174 | −0.1650 | 0.5137 | 0.031* | |
| C11 | 0.63200 (13) | −0.03982 (14) | 0.27233 (10) | 0.0237 (3) | |
| C12 | 0.66787 (14) | 0.08973 (15) | 0.20873 (9) | 0.0272 (3) | |
| H12A | 0.7695 | 0.1158 | 0.2266 | 0.033* | |
| H12B | 0.6124 | 0.1823 | 0.2169 | 0.033* |
| Cl1 | 0.0485 (2) | 0.0282 (2) | 0.0289 (2) | 0.00339 (14) | −0.00042 (16) | −0.00073 (13) |
| O1 | 0.0291 (5) | 0.0214 (5) | 0.0375 (6) | −0.0028 (4) | 0.0034 (4) | −0.0060 (4) |
| N1 | 0.0219 (5) | 0.0164 (5) | 0.0314 (6) | −0.0042 (4) | 0.0021 (4) | 0.0009 (4) |
| N2 | 0.0241 (5) | 0.0174 (5) | 0.0309 (6) | −0.0036 (4) | 0.0033 (4) | −0.0005 (4) |
| C1 | 0.0199 (6) | 0.0161 (6) | 0.0319 (7) | 0.0025 (4) | 0.0027 (5) | 0.0008 (5) |
| C2 | 0.0236 (6) | 0.0199 (6) | 0.0396 (8) | −0.0006 (5) | 0.0072 (6) | 0.0022 (5) |
| C3 | 0.0358 (7) | 0.0233 (7) | 0.0360 (8) | 0.0027 (6) | 0.0105 (6) | 0.0043 (6) |
| C4 | 0.0359 (7) | 0.0263 (7) | 0.0293 (8) | 0.0046 (6) | 0.0021 (6) | −0.0028 (6) |
| C5 | 0.0261 (7) | 0.0254 (7) | 0.0364 (8) | −0.0013 (5) | 0.0016 (6) | −0.0042 (6) |
| C6 | 0.0222 (6) | 0.0210 (6) | 0.0325 (8) | −0.0023 (5) | 0.0047 (5) | −0.0005 (5) |
| C7 | 0.0242 (6) | 0.0181 (6) | 0.0333 (8) | −0.0051 (5) | 0.0028 (5) | 0.0003 (5) |
| C8 | 0.0306 (7) | 0.0164 (6) | 0.0314 (7) | −0.0031 (5) | 0.0026 (6) | −0.0005 (5) |
| C9 | 0.0228 (6) | 0.0169 (6) | 0.0348 (8) | −0.0049 (5) | 0.0048 (5) | −0.0006 (5) |
| C10 | 0.0220 (6) | 0.0160 (6) | 0.0375 (8) | −0.0023 (5) | 0.0031 (5) | 0.0013 (5) |
| C11 | 0.0165 (6) | 0.0193 (6) | 0.0341 (7) | 0.0031 (5) | 0.0022 (5) | −0.0011 (5) |
| C12 | 0.0280 (7) | 0.0220 (6) | 0.0291 (7) | 0.0016 (5) | −0.0004 (5) | −0.0014 (5) |
| Cl1—C12 | 1.7682 (14) | C5—C6 | 1.386 (2) |
| O1—C11 | 1.2304 (15) | C5—H5 | 0.9300 |
| N1—C1 | 1.4157 (18) | C6—H6 | 0.9300 |
| N1—C7 | 1.4586 (16) | C7—C8 | 1.5119 (18) |
| N1—C10 | 1.4705 (16) | C7—H7A | 0.9700 |
| N2—C11 | 1.3463 (18) | C7—H7B | 0.9700 |
| N2—C9 | 1.4632 (17) | C8—H8A | 0.9700 |
| N2—C8 | 1.4666 (15) | C8—H8B | 0.9700 |
| C1—C6 | 1.3965 (18) | C9—C10 | 1.5177 (18) |
| C1—C2 | 1.4015 (19) | C9—H9A | 0.9700 |
| C2—C3 | 1.381 (2) | C9—H9B | 0.9700 |
| C2—H2 | 0.9300 | C10—H10A | 0.9700 |
| C3—C4 | 1.391 (2) | C10—H10B | 0.9700 |
| C3—H3 | 0.9300 | C11—C12 | 1.5229 (18) |
| C4—C5 | 1.383 (2) | C12—H12A | 0.9700 |
| C4—H4 | 0.9300 | C12—H12B | 0.9700 |
| C1—N1—C7 | 117.19 (10) | H7A—C7—H7B | 108.2 |
| C1—N1—C10 | 115.21 (10) | N2—C8—C7 | 110.53 (10) |
| C7—N1—C10 | 110.21 (11) | N2—C8—H8A | 109.5 |
| C11—N2—C9 | 119.41 (10) | C7—C8—H8A | 109.5 |
| C11—N2—C8 | 124.38 (11) | N2—C8—H8B | 109.5 |
| C9—N2—C8 | 114.07 (11) | C7—C8—H8B | 109.5 |
| C6—C1—C2 | 118.20 (13) | H8A—C8—H8B | 108.1 |
| C6—C1—N1 | 123.06 (12) | N2—C9—C10 | 111.12 (10) |
| C2—C1—N1 | 118.70 (11) | N2—C9—H9A | 109.4 |
| C3—C2—C1 | 120.76 (13) | C10—C9—H9A | 109.4 |
| C3—C2—H2 | 119.6 | N2—C9—H9B | 109.4 |
| C1—C2—H2 | 119.6 | C10—C9—H9B | 109.4 |
| C2—C3—C4 | 120.68 (13) | H9A—C9—H9B | 108.0 |
| C2—C3—H3 | 119.7 | N1—C10—C9 | 111.28 (10) |
| C4—C3—H3 | 119.7 | N1—C10—H10A | 109.4 |
| C5—C4—C3 | 118.83 (14) | C9—C10—H10A | 109.4 |
| C5—C4—H4 | 120.6 | N1—C10—H10B | 109.4 |
| C3—C4—H4 | 120.6 | C9—C10—H10B | 109.4 |
| C4—C5—C6 | 121.01 (13) | H10A—C10—H10B | 108.0 |
| C4—C5—H5 | 119.5 | O1—C11—N2 | 122.85 (12) |
| C6—C5—H5 | 119.5 | O1—C11—C12 | 121.70 (12) |
| C5—C6—C1 | 120.52 (13) | N2—C11—C12 | 115.44 (10) |
| C5—C6—H6 | 119.7 | C11—C12—Cl1 | 111.30 (9) |
| C1—C6—H6 | 119.7 | C11—C12—H12A | 109.4 |
| N1—C7—C8 | 109.74 (11) | Cl1—C12—H12A | 109.4 |
| N1—C7—H7A | 109.7 | C11—C12—H12B | 109.4 |
| C8—C7—H7A | 109.7 | Cl1—C12—H12B | 109.4 |
| N1—C7—H7B | 109.7 | H12A—C12—H12B | 108.0 |
| C8—C7—H7B | 109.7 | ||
| C7—N1—C1—C6 | −10.51 (17) | C11—N2—C8—C7 | −143.92 (12) |
| C10—N1—C1—C6 | 121.65 (13) | C9—N2—C8—C7 | 52.87 (14) |
| C7—N1—C1—C2 | 166.96 (11) | N1—C7—C8—N2 | −57.54 (14) |
| C10—N1—C1—C2 | −60.88 (15) | C11—N2—C9—C10 | 145.88 (11) |
| C6—C1—C2—C3 | −1.11 (18) | C8—N2—C9—C10 | −50.00 (14) |
| N1—C1—C2—C3 | −178.71 (11) | C1—N1—C10—C9 | 166.07 (10) |
| C1—C2—C3—C4 | 0.7 (2) | C7—N1—C10—C9 | −58.57 (13) |
| C2—C3—C4—C5 | 0.3 (2) | N2—C9—C10—N1 | 52.08 (14) |
| C3—C4—C5—C6 | −0.9 (2) | C9—N2—C11—O1 | −6.05 (18) |
| C4—C5—C6—C1 | 0.5 (2) | C8—N2—C11—O1 | −168.43 (12) |
| C2—C1—C6—C5 | 0.48 (19) | C9—N2—C11—C12 | 174.87 (11) |
| N1—C1—C6—C5 | 177.96 (11) | C8—N2—C11—C12 | 12.49 (17) |
| C1—N1—C7—C8 | −164.61 (10) | O1—C11—C12—Cl1 | −0.20 (15) |
| C10—N1—C7—C8 | 61.01 (13) | N2—C11—C12—Cl1 | 178.89 (9) |
| H··· | ||||
| C2—H2···O1i | 0.93 | 2.47 | 3.1850 (16) | 134 |
| C9—H9A···O1 | 0.97 | 2.38 | 2.7456 (17) | 102 |
| C12—H12B···O1ii | 0.97 | 2.43 | 3.3426 (16) | 157 |
| C5—H5···Cg2iii | 0.93 | 3.25 | 3.7651 (15) | 117 |
| C8—H8B···Cg2iv | 0.97 | 3.09 | 4.0393 (12) | 168 |
| C12—H12A···Cg2iv | 0.97 | 3.04 | 3.6878 | 125 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯O1i | 0.93 | 2.47 | 3.1850 (16) | 134 |
| C9—H9 | 0.97 | 2.38 | 2.7456 (17) | 102 |
| C12—H12 | 0.97 | 2.43 | 3.3426 (16) | 157 |
| C5—H5⋯ | 0.93 | 3.25 | 3.7651 (15) | 117 |
| C8—H8 | 0.97 | 3.09 | 4.0393 (12) | 168 |
| C12—H12 | 0.97 | 3.04 | 3.6878 | 125 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is the centroid of the C1–C6 ring.