Literature DB >> 21583080

1-Chloro-2-(4-phenyl-piperazin-1-yl)ethanone.

Yong-Ji Xu1, Fei Jing.   

Abstract

The title compound, C(12)H(15)ClN(2)O, is a piperazine derivative with the potential for use as a starting material for pharmaceutial and agrochemical applications. The structure is stabilized by C-H⋯O hydrogen bonds, C-H⋯π inter-actions and π-π stacking inter-actions [centroid-centroid distance = is 4.760 (2) Å].

Entities:  

Year:  2009        PMID: 21583080      PMCID: PMC2969821          DOI: 10.1107/S1600536809008216

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperazine and its derivatives, see: Berkheij (2005 ▶); Upadhayaya et al. (2004 ▶); Choudhary et al. (2006 ▶); Vacca et al. (1994 ▶); Hulme (1999 ▶). For reference structural data, see: Drew & Leslie (1986 ▶).

Experimental

Crystal data

C12H15ClN2O M = 238.71 Monoclinic, a = 9.4423 (19) Å b = 8.5629 (17) Å c = 14.506 (3) Å β = 101.34 (3)° V = 1149.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 113 K 0.20 × 0.18 × 0.12 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.940, T max = 0.964 9264 measured reflections 2729 independent reflections 2151 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.07 2729 reflections 145 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809008216/hg2461sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008216/hg2461Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15ClN2OF(000) = 504
Mr = 238.71Dx = 1.379 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3260 reflections
a = 9.4423 (19) Åθ = 3.2–27.9°
b = 8.5629 (17) ŵ = 0.31 mm1
c = 14.506 (3) ÅT = 113 K
β = 101.34 (3)°Block, colourless
V = 1149.9 (4) Å30.20 × 0.18 × 0.12 mm
Z = 4
Rigaku Saturn diffractometer2729 independent reflections
Radiation source: rotating anode2151 reflections with I > 2σ(I)
confocalRint = 0.035
ω scansθmax = 27.9°, θmin = 3.2°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −12→12
Tmin = 0.940, Tmax = 0.964k = −8→11
9264 measured reflectionsl = −16→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.055P)2 + 0.0763P] where P = (Fo2 + 2Fc2)/3
2729 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.62862 (4)0.03256 (4)0.08928 (2)0.03631 (13)
O10.58185 (10)−0.16571 (10)0.24044 (7)0.0297 (2)
N10.75320 (11)0.03812 (12)0.56187 (8)0.0237 (2)
N20.66086 (12)−0.00754 (12)0.36497 (8)0.0244 (2)
C10.82553 (13)0.04592 (14)0.65699 (10)0.0230 (3)
C20.76046 (14)−0.02277 (14)0.72590 (10)0.0276 (3)
H20.6724−0.07390.70820.033*
C30.82561 (16)−0.01541 (15)0.81981 (11)0.0312 (3)
H30.7815−0.06270.86460.037*
C40.95649 (16)0.06196 (16)0.84812 (10)0.0311 (3)
H41.00040.06640.91130.037*
C51.02012 (14)0.13211 (15)0.78058 (10)0.0299 (3)
H51.10690.18540.79890.036*
C60.95647 (13)0.12419 (15)0.68604 (10)0.0253 (3)
H61.00130.17140.64160.030*
C70.80673 (14)0.13837 (14)0.49496 (10)0.0256 (3)
H7A0.89610.09610.48210.031*
H7B0.82630.24190.52150.031*
C80.69545 (14)0.14856 (14)0.40466 (10)0.0266 (3)
H8A0.60840.19750.41700.032*
H8B0.73250.21280.35970.032*
C90.61886 (13)−0.11941 (14)0.43097 (10)0.0250 (3)
H9A0.6128−0.22310.40350.030*
H9B0.5242−0.09210.44250.030*
C100.72706 (13)−0.12050 (14)0.52343 (10)0.0256 (3)
H10A0.6908−0.18570.56830.031*
H10B0.8174−0.16500.51370.031*
C110.63200 (13)−0.03982 (14)0.27233 (10)0.0237 (3)
C120.66787 (14)0.08973 (15)0.20873 (9)0.0272 (3)
H12A0.76950.11580.22660.033*
H12B0.61240.18230.21690.033*
U11U22U33U12U13U23
Cl10.0485 (2)0.0282 (2)0.0289 (2)0.00339 (14)−0.00042 (16)−0.00073 (13)
O10.0291 (5)0.0214 (5)0.0375 (6)−0.0028 (4)0.0034 (4)−0.0060 (4)
N10.0219 (5)0.0164 (5)0.0314 (6)−0.0042 (4)0.0021 (4)0.0009 (4)
N20.0241 (5)0.0174 (5)0.0309 (6)−0.0036 (4)0.0033 (4)−0.0005 (4)
C10.0199 (6)0.0161 (6)0.0319 (7)0.0025 (4)0.0027 (5)0.0008 (5)
C20.0236 (6)0.0199 (6)0.0396 (8)−0.0006 (5)0.0072 (6)0.0022 (5)
C30.0358 (7)0.0233 (7)0.0360 (8)0.0027 (6)0.0105 (6)0.0043 (6)
C40.0359 (7)0.0263 (7)0.0293 (8)0.0046 (6)0.0021 (6)−0.0028 (6)
C50.0261 (7)0.0254 (7)0.0364 (8)−0.0013 (5)0.0016 (6)−0.0042 (6)
C60.0222 (6)0.0210 (6)0.0325 (8)−0.0023 (5)0.0047 (5)−0.0005 (5)
C70.0242 (6)0.0181 (6)0.0333 (8)−0.0051 (5)0.0028 (5)0.0003 (5)
C80.0306 (7)0.0164 (6)0.0314 (7)−0.0031 (5)0.0026 (6)−0.0005 (5)
C90.0228 (6)0.0169 (6)0.0348 (8)−0.0049 (5)0.0048 (5)−0.0006 (5)
C100.0220 (6)0.0160 (6)0.0375 (8)−0.0023 (5)0.0031 (5)0.0013 (5)
C110.0165 (6)0.0193 (6)0.0341 (7)0.0031 (5)0.0022 (5)−0.0011 (5)
C120.0280 (7)0.0220 (6)0.0291 (7)0.0016 (5)−0.0004 (5)−0.0014 (5)
Cl1—C121.7682 (14)C5—C61.386 (2)
O1—C111.2304 (15)C5—H50.9300
N1—C11.4157 (18)C6—H60.9300
N1—C71.4586 (16)C7—C81.5119 (18)
N1—C101.4705 (16)C7—H7A0.9700
N2—C111.3463 (18)C7—H7B0.9700
N2—C91.4632 (17)C8—H8A0.9700
N2—C81.4666 (15)C8—H8B0.9700
C1—C61.3965 (18)C9—C101.5177 (18)
C1—C21.4015 (19)C9—H9A0.9700
C2—C31.381 (2)C9—H9B0.9700
C2—H20.9300C10—H10A0.9700
C3—C41.391 (2)C10—H10B0.9700
C3—H30.9300C11—C121.5229 (18)
C4—C51.383 (2)C12—H12A0.9700
C4—H40.9300C12—H12B0.9700
C1—N1—C7117.19 (10)H7A—C7—H7B108.2
C1—N1—C10115.21 (10)N2—C8—C7110.53 (10)
C7—N1—C10110.21 (11)N2—C8—H8A109.5
C11—N2—C9119.41 (10)C7—C8—H8A109.5
C11—N2—C8124.38 (11)N2—C8—H8B109.5
C9—N2—C8114.07 (11)C7—C8—H8B109.5
C6—C1—C2118.20 (13)H8A—C8—H8B108.1
C6—C1—N1123.06 (12)N2—C9—C10111.12 (10)
C2—C1—N1118.70 (11)N2—C9—H9A109.4
C3—C2—C1120.76 (13)C10—C9—H9A109.4
C3—C2—H2119.6N2—C9—H9B109.4
C1—C2—H2119.6C10—C9—H9B109.4
C2—C3—C4120.68 (13)H9A—C9—H9B108.0
C2—C3—H3119.7N1—C10—C9111.28 (10)
C4—C3—H3119.7N1—C10—H10A109.4
C5—C4—C3118.83 (14)C9—C10—H10A109.4
C5—C4—H4120.6N1—C10—H10B109.4
C3—C4—H4120.6C9—C10—H10B109.4
C4—C5—C6121.01 (13)H10A—C10—H10B108.0
C4—C5—H5119.5O1—C11—N2122.85 (12)
C6—C5—H5119.5O1—C11—C12121.70 (12)
C5—C6—C1120.52 (13)N2—C11—C12115.44 (10)
C5—C6—H6119.7C11—C12—Cl1111.30 (9)
C1—C6—H6119.7C11—C12—H12A109.4
N1—C7—C8109.74 (11)Cl1—C12—H12A109.4
N1—C7—H7A109.7C11—C12—H12B109.4
C8—C7—H7A109.7Cl1—C12—H12B109.4
N1—C7—H7B109.7H12A—C12—H12B108.0
C8—C7—H7B109.7
C7—N1—C1—C6−10.51 (17)C11—N2—C8—C7−143.92 (12)
C10—N1—C1—C6121.65 (13)C9—N2—C8—C752.87 (14)
C7—N1—C1—C2166.96 (11)N1—C7—C8—N2−57.54 (14)
C10—N1—C1—C2−60.88 (15)C11—N2—C9—C10145.88 (11)
C6—C1—C2—C3−1.11 (18)C8—N2—C9—C10−50.00 (14)
N1—C1—C2—C3−178.71 (11)C1—N1—C10—C9166.07 (10)
C1—C2—C3—C40.7 (2)C7—N1—C10—C9−58.57 (13)
C2—C3—C4—C50.3 (2)N2—C9—C10—N152.08 (14)
C3—C4—C5—C6−0.9 (2)C9—N2—C11—O1−6.05 (18)
C4—C5—C6—C10.5 (2)C8—N2—C11—O1−168.43 (12)
C2—C1—C6—C50.48 (19)C9—N2—C11—C12174.87 (11)
N1—C1—C6—C5177.96 (11)C8—N2—C11—C1212.49 (17)
C1—N1—C7—C8−164.61 (10)O1—C11—C12—Cl1−0.20 (15)
C10—N1—C7—C861.01 (13)N2—C11—C12—Cl1178.89 (9)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.932.473.1850 (16)134
C9—H9A···O10.972.382.7456 (17)102
C12—H12B···O1ii0.972.433.3426 (16)157
C5—H5···Cg2iii0.933.253.7651 (15)117
C8—H8B···Cg2iv0.973.094.0393 (12)168
C12—H12A···Cg2iv0.973.043.6878125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O1i0.932.473.1850 (16)134
C9—H9A⋯O10.972.382.7456 (17)102
C12—H12B⋯O1ii0.972.433.3426 (16)157
C5—H5⋯Cg2iii0.933.253.7651 (15)117
C8—H8BCg2iv0.973.094.0393 (12)168
C12—H12ACg2iv0.973.043.6878125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is the centroid of the C1–C6 ring.

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