Literature DB >> 21583048

Bis(acetato-κO,O')bis-(3,5-dimethyl-1H-pyrazole-κN)copper(II).

Yuliya M Davydenko, Igor O Fritsky, Vadim O Pavlenko, Franc Meyer, Sebastian Dechert.   

Abstract

In the title compound, [Cu(C(2)H(3)O(2))(2)(C(5)H(8)N(2))(2)], the Cu(II) atom has a distorted tetra-gonal-bipyramidal geometry, with the equatorial plane formed by two N atoms belonging to two 3,5-dimethyl-1H-pyrazole ligands and two O atoms from two acetate anions. The second O atoms of the acetate groups provide elongated Cu-O axial contacts, so that the acetates appear to be coordinated in a pseudo-chelate fashion. The pyrazole ligands are situated in cis positions with respect to each other. In the crystal structure, mol-ecules are linked through inter-molecular N-H⋯O hydrogen bonds, forming a one-dimensional chain.

Entities:  

Year:  2009        PMID: 21583048      PMCID: PMC2969789          DOI: 10.1107/S1600536809019400

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties and applications of 1H-pyrazole and its 3,5-substituted derivatives, see: Fritsky et al. (1993 ▶, 1994a ▶,b ▶); Halcrow (2001 ▶); Jain et al. (2004 ▶); Krämer (1999 ▶); Krämer et al. (2002 ▶); Raptis et al. (1999 ▶); Seredyuk et al. (2007 ▶); Skopenko et al. (1990 ▶). For related compounds, see: Barooah et al. (2006 ▶); Deka et al. (2006 ▶); Karmakar et al. (2007 ▶); Porai-Koshits (1980 ▶); Pradeep et al. (2006 ▶).

Experimental

Crystal data

[Cu(C2H3O2)2(C5H8N2)2] M = 373.90 Triclinic, a = 9.2861 (11) Å b = 10.1684 (12) Å c = 10.3139 (13) Å α = 110.755 (9)° β = 100.901 (10)° γ = 99.383 (9)° V = 865.7 (2) Å3 Z = 2 Mo Kα radiation μ = 1.29 mm−1 T = 133 K 0.50 × 0.08 × 0.07 mm

Data collection

Stoe IPDSII diffractometer Absorption correction: numerical (X-RED; Stoe & Cie, 2002 ▶) T min = 0.790, T max = 0.935 7882 measured reflections 3713 independent reflections 3129 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.071 S = 1.02 3713 reflections 222 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.66 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809019400/hy2196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019400/hy2196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C2H3O2)2(C5H8N2)2]Z = 2
Mr = 373.90F(000) = 390
Triclinic, P1Dx = 1.434 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.2861 (11) ÅCell parameters from 7882 reflections
b = 10.1684 (12) Åθ = 2.2–27.1°
c = 10.3139 (13) ŵ = 1.29 mm1
α = 110.755 (9)°T = 133 K
β = 100.901 (10)°Needle, blue
γ = 99.383 (9)°0.50 × 0.08 × 0.07 mm
V = 865.7 (2) Å3
Stoe IPDSII diffractometer3713 independent reflections
Radiation source: fine-focus sealed tube3129 reflections with I > 2σ(I)
graphiteRint = 0.029
ω scansθmax = 27.1°, θmin = 2.2°
Absorption correction: numerical (X-RED; Stoe & Cie, 2002)h = −11→11
Tmin = 0.790, Tmax = 0.935k = −12→12
7882 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0405P)2] where P = (Fo2 + 2Fc2)/3
3713 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.66 e Å3
xyzUiso*/Ueq
Cu10.59542 (3)0.26364 (3)0.28774 (3)0.01892 (8)
N10.46111 (18)0.31000 (19)0.1448 (2)0.0219 (4)
N20.35711 (19)0.2059 (2)0.0274 (2)0.0236 (4)
N30.41420 (18)0.17191 (19)0.3311 (2)0.0206 (4)
N40.30556 (18)0.2416 (2)0.3681 (2)0.0208 (4)
O10.73397 (15)0.25272 (16)0.45427 (17)0.0241 (3)
O20.69120 (17)0.47040 (17)0.52556 (18)0.0290 (3)
O30.77354 (16)0.32001 (17)0.21787 (18)0.0274 (3)
O40.67255 (17)0.08587 (17)0.09809 (18)0.0313 (4)
C10.4435 (2)0.4379 (2)0.1444 (2)0.0236 (4)
C20.3264 (2)0.4129 (3)0.0235 (3)0.0281 (5)
H2A0.29060.4827−0.00250.080*
C30.2751 (2)0.2644 (3)−0.0486 (2)0.0264 (5)
C40.5404 (3)0.5761 (2)0.2603 (3)0.0295 (5)
H4A0.49750.60130.34090.080*
H4B0.54600.65190.22510.080*
H4C0.64020.56450.29000.080*
C50.1575 (3)0.1717 (3)−0.1863 (3)0.0361 (6)
H5A0.20580.1261−0.25870.080*
H5B0.10020.2310−0.21700.080*
H5C0.09090.0986−0.17190.080*
C60.3738 (2)0.0426 (2)0.3370 (2)0.0223 (4)
C70.2394 (2)0.0308 (2)0.3797 (3)0.0260 (5)
H70.1875−0.04810.39240.080*
C80.1996 (2)0.1597 (2)0.3991 (2)0.0226 (4)
C90.4646 (3)−0.0668 (3)0.2981 (3)0.0331 (5)
H9A0.4376−0.11800.19540.080*
H9B0.4442−0.13450.34170.080*
H9C0.5705−0.01830.33200.080*
C100.0700 (2)0.2149 (3)0.4456 (3)0.0317 (5)
H10A0.10820.30800.52460.080*
H10B0.01380.14790.47530.080*
H10C0.00490.22400.36680.080*
C110.7570 (2)0.3795 (2)0.5494 (2)0.0232 (4)
C120.8678 (3)0.4198 (3)0.6921 (3)0.0344 (5)
H12A0.96370.47420.69440.080*
H12B0.88030.33310.70540.080*
H12C0.83030.47770.76780.080*
C130.7706 (2)0.1986 (3)0.1243 (2)0.0268 (5)
C140.8912 (3)0.1923 (3)0.0435 (3)0.0450 (7)
H14A0.98470.19440.10380.080*
H14B0.90530.27430.01740.080*
H14C0.86010.1042−0.04180.080*
H40.319 (3)0.334 (3)0.384 (3)0.023 (6)*
H20.351 (3)0.118 (3)0.003 (3)0.027 (7)*
U11U22U33U12U13U23
Cu10.01590 (12)0.01845 (13)0.02150 (14)0.00555 (9)0.00670 (9)0.00546 (10)
N10.0212 (8)0.0212 (9)0.0221 (10)0.0048 (7)0.0071 (7)0.0068 (8)
N20.0227 (8)0.0215 (10)0.0224 (10)0.0043 (7)0.0060 (7)0.0047 (8)
N30.0179 (7)0.0201 (9)0.0239 (10)0.0087 (7)0.0071 (7)0.0064 (8)
N40.0182 (8)0.0218 (9)0.0241 (10)0.0090 (7)0.0086 (7)0.0078 (8)
O10.0202 (7)0.0217 (8)0.0275 (9)0.0083 (6)0.0053 (6)0.0057 (7)
O20.0331 (8)0.0240 (8)0.0318 (9)0.0132 (7)0.0121 (7)0.0088 (7)
O30.0225 (7)0.0264 (8)0.0282 (9)0.0029 (6)0.0101 (6)0.0046 (7)
O40.0274 (8)0.0259 (8)0.0331 (10)0.0053 (7)0.0110 (7)0.0024 (7)
C10.0259 (10)0.0257 (11)0.0233 (12)0.0093 (8)0.0126 (9)0.0102 (10)
C20.0303 (11)0.0317 (12)0.0293 (13)0.0140 (9)0.0125 (10)0.0151 (11)
C30.0215 (9)0.0365 (13)0.0242 (12)0.0094 (9)0.0096 (9)0.0126 (10)
C40.0364 (11)0.0227 (11)0.0294 (13)0.0073 (9)0.0106 (10)0.0097 (10)
C50.0264 (11)0.0475 (15)0.0279 (13)0.0065 (10)0.0030 (10)0.0109 (12)
C60.0225 (9)0.0204 (10)0.0233 (11)0.0077 (8)0.0063 (8)0.0069 (9)
C70.0208 (9)0.0273 (11)0.0302 (12)0.0035 (8)0.0076 (9)0.0123 (10)
C80.0175 (9)0.0267 (11)0.0214 (11)0.0057 (8)0.0054 (8)0.0069 (9)
C90.0336 (11)0.0251 (12)0.0473 (16)0.0153 (10)0.0167 (11)0.0155 (11)
C100.0225 (10)0.0410 (14)0.0336 (13)0.0129 (10)0.0137 (10)0.0118 (12)
C110.0185 (9)0.0244 (11)0.0256 (12)0.0059 (8)0.0086 (8)0.0073 (9)
C120.0298 (11)0.0380 (14)0.0276 (13)0.0105 (10)0.0049 (10)0.0048 (11)
C130.0203 (9)0.0308 (12)0.0238 (12)0.0061 (9)0.0048 (9)0.0053 (10)
C140.0316 (12)0.0565 (18)0.0360 (15)0.0053 (12)0.0197 (11)0.0029 (14)
Cu1—N11.9851 (18)C4—H4B0.9600
Cu1—N31.9925 (16)C4—H4C0.9600
Cu1—O11.9909 (15)C5—H5A0.9600
Cu1—O22.4774 (18)C5—H5B0.9600
Cu1—O32.0045 (14)C5—H5C0.9600
Cu1—O42.4603 (16)C6—C71.402 (3)
N1—C11.338 (3)C6—C91.492 (3)
N1—N21.355 (3)C7—C81.377 (3)
N2—C31.342 (3)C7—H70.9300
N2—H20.82 (3)C8—C101.497 (3)
N3—C61.333 (3)C9—H9A0.9600
N3—N41.361 (2)C9—H9B0.9600
N4—C81.343 (3)C9—H9C0.9600
N4—H40.87 (3)C10—H10A0.9600
O1—C111.266 (3)C10—H10B0.9600
O2—C111.256 (2)C10—H10C0.9600
O3—C131.262 (3)C11—C121.502 (3)
O4—C131.250 (3)C12—H12A0.9600
C1—C21.405 (3)C12—H12B0.9600
C1—C41.485 (3)C12—H12C0.9600
C2—C31.377 (3)C13—C141.513 (3)
C2—H2A0.9300C14—H14A0.9600
C3—C51.492 (3)C14—H14B0.9600
C4—H4A0.9600C14—H14C0.9600
N1—Cu1—O1170.00 (7)C3—C5—H5A109.5
N1—Cu1—N389.80 (7)C3—C5—H5B109.5
O1—Cu1—N391.52 (7)H5A—C5—H5B109.5
N1—Cu1—O390.43 (7)C3—C5—H5C109.5
O1—Cu1—O390.04 (6)H5A—C5—H5C109.5
N3—Cu1—O3169.70 (7)H5B—C5—H5C109.5
N1—Cu1—O491.91 (7)N3—C6—C7109.75 (17)
O1—Cu1—O496.79 (6)N3—C6—C9121.28 (18)
N3—Cu1—O4111.84 (6)C7—C6—C9128.9 (2)
O3—Cu1—O457.86 (6)C8—C7—C6106.03 (18)
N1—Cu1—O2112.23 (6)C8—C7—H7127.0
O1—Cu1—O257.78 (6)C6—C7—H7127.0
N3—Cu1—O295.42 (7)N4—C8—C7106.80 (17)
O3—Cu1—O294.03 (6)N4—C8—C10121.04 (19)
O4—Cu1—O2143.81 (5)C7—C8—C10132.2 (2)
C1—N1—N2106.62 (17)C6—C9—H9A109.5
C1—N1—Cu1130.74 (16)C6—C9—H9B109.5
N2—N1—Cu1122.49 (13)H9A—C9—H9B109.5
C3—N2—N1111.34 (19)C6—C9—H9C109.5
C3—N2—H2125.2 (19)H9A—C9—H9C109.5
N1—N2—H2123.2 (18)H9B—C9—H9C109.5
C6—N3—N4106.06 (15)C8—C10—H10A109.5
C6—N3—Cu1131.10 (13)C8—C10—H10B109.5
N4—N3—Cu1122.80 (13)H10A—C10—H10B109.5
C8—N4—N3111.35 (17)C8—C10—H10C109.5
C8—N4—H4127.8 (15)H10A—C10—H10C109.5
N3—N4—H4119.9 (15)H10B—C10—H10C109.5
C11—O1—Cu1101.34 (13)O2—C11—O1121.5 (2)
C11—O2—Cu179.30 (13)O2—C11—C12120.4 (2)
C13—O3—Cu1100.41 (13)O1—C11—C12118.11 (19)
C13—O4—Cu179.78 (13)C11—C12—H12A109.5
N1—C1—C2109.0 (2)C11—C12—H12B109.5
N1—C1—C4120.58 (19)H12A—C12—H12B109.5
C2—C1—C4130.46 (19)C11—C12—H12C109.5
C3—C2—C1106.30 (19)H12A—C12—H12C109.5
C3—C2—H2A126.8H12B—C12—H12C109.5
C1—C2—H2A126.8O4—C13—O3121.95 (19)
N2—C3—C2106.8 (2)O4—C13—C14120.2 (2)
N2—C3—C5121.5 (2)O3—C13—C14117.8 (2)
C2—C3—C5131.7 (2)C13—C14—H14A109.5
C1—C4—H4A109.5C13—C14—H14B109.5
C1—C4—H4B109.5H14A—C14—H14B109.5
H4A—C4—H4B109.5C13—C14—H14C109.5
C1—C4—H4C109.5H14A—C14—H14C109.5
H4A—C4—H4C109.5H14B—C14—H14C109.5
H4B—C4—H4C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···O4i0.82 (3)1.92 (3)2.726 (3)166 (3)
N4—H4···O2ii0.87 (3)1.91 (3)2.732 (2)157 (2)
Table 1

Selected bond lengths (Å)

Cu1—N11.9851 (18)
Cu1—N31.9925 (16)
Cu1—O11.9909 (15)
Cu1—O22.4774 (18)
Cu1—O32.0045 (14)
Cu1—O42.4603 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O4i0.82 (3)1.92 (3)2.726 (3)166 (3)
N4—H4⋯O2ii0.87 (3)1.91 (3)2.732 (2)157 (2)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Chemically Modified Amino Acids in Copper Proteins That Bind or Activate Dioxygen The author acknowledges the Royal Society (London) for a University Research Fellowship.

Authors:  Malcolm A. Halcrow
Journal:  Angew Chem Int Ed Engl       Date:  2001-01-19       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  New pyridine carboxamide ligands and their complexation to copper(II). X-Ray crystal structures of mono-, di, tri- and tetranuclear copper complexes.

Authors:  Sneh L Jain; Pravat Bhattacharyya; Heather L Milton; Alexandra M Z Slawin; Joe A Crayston; J Derek Woollins
Journal:  Dalton Trans       Date:  2004-02-23       Impact factor: 4.390

4.  Bis(3,5-dimethyl-1H-pyrazolyl)selenide--a new bidentate bent connector for preparation of 1D and 2D co-ordination polymers.

Authors:  Maksym Seredyuk; Matti Haukka; Igor O Fritsky; Henryk Kozłowski; Roland Krämer; Vadim A Pavlenko; Philipp Gütlich
Journal:  Dalton Trans       Date:  2007-06-19       Impact factor: 4.390

  4 in total
  1 in total

1.  Chloridotris(3,5-dimethyl-1H-pyrazole-κN)(formato-κO)copper(II)-dichlorido-bis(3,5-dimethyl-1H-pyrazole-κN)copper(II) (2/1).

Authors:  Yuliya M Davydenko; Igor O Fritsky; Vadim O Pavlenko; Franc Meyer; Sebastian Dechert
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07
  1 in total

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