Literature DB >> 21583024

Redetermination of bis-(O,O'-diethyl dithio-phosphato-κS,S')nickel(II).

Damian Paliwoda1, Jarosław Chojnacki, Anna Mietlarek-Kropidłowska, Barbara Becker.   

Abstract

The centrosymmetric title complex, [Ni{S(2)P(OC(2)H(5))(2)}(2)], has been redetermined using area-detector data. The central Ni(S(2)P)(2) core is essentially planar and confirms the early results of McConnell & Kastalsky [Acta Cryst. (1967), 22, 853-859] based on multiple film technique data. In the title structure, the standard uncertainty values are approximately seven times lower and all H-atom positions are calculated. A pair of short symmetry-related H⋯H contacts with distances of 2.33 Å is observed in the crystal structure.

Entities:  

Year:  2009        PMID: 21583024      PMCID: PMC2969620          DOI: 10.1107/S160053680901767X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses and structure of a series of homologous Ni(S2P{OR}2)2 complexes, see: R = Me: Kastalsky & McConnell (1969 ▶); R = Et: Fernando & Green (1967 ▶); McConnell & Kastalsky (1967 ▶); R = Pr and R = Bu: Ivanov et al. (2004 ▶); R = Pr: Tkachev & Atovmyan (1976 ▶); Hoskins & Tiekink (1985 ▶). For complexes with sulfur-rich kernel-bearing silanethiol­ato and dithio­carbamato ligands, see: Kropidłowska et al. (2008 ▶). For hydrogen bonds, see: Steiner & Desiraju (1998 ▶).

Experimental

Crystal data

[Ni(C4H10O2PS2)2] M = 429.13 Monoclinic, a = 10.4810 (4) Å b = 10.2777 (3) Å c = 8.7541 (3) Å β = 102.820 (3)° V = 919.49 (6) Å3 Z = 2 Mo Kα radiation μ = 1.69 mm−1 T = 295 K 0.41 × 0.34 × 0.09 mm

Data collection

Oxford Diffraction KM-4-CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.530, T max = 0.853 7073 measured reflections 2012 independent reflections 1768 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.083 S = 1.09 2012 reflections 91 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680901767X/si2169sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901767X/si2169Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C4H10O2PS2)2]F(000) = 444
Mr = 429.13Dx = 1.55 Mg m3
Monoclinic, P21/cMelting point: 378 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.4810 (4) ÅCell parameters from 5670 reflections
b = 10.2777 (3) Åθ = 2.0–32.3°
c = 8.7541 (3) ŵ = 1.69 mm1
β = 102.820 (3)°T = 295 K
V = 919.49 (6) Å3Prism, violet
Z = 20.41 × 0.34 × 0.09 mm
Oxford Diffraction KM-4-CCD diffractometer2012 independent reflections
graphite1768 reflections with I > 2σ(I)
Detector resolution: 8.1883 pixels mm-1Rint = 0.016
ω (0.75° width) scansθmax = 27.0°, θmin = 2.8°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)h = −13→13
Tmin = 0.530, Tmax = 0.853k = −7→13
7073 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.0441P)2 + 0.3217P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
2012 reflectionsΔρmax = 0.30 e Å3
91 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.027 (2)
Experimental. Oxford Diffraction Ltd., 2008. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10100.04253 (14)
P1−0.23354 (5)0.94137 (6)0.09934 (7)0.04844 (17)
S1−0.07705 (6)0.82989 (6)0.10854 (9)0.0633 (2)
S2−0.18740 (6)1.10251 (6)−0.00212 (8)0.06062 (19)
O1−0.36674 (16)0.87744 (19)0.01719 (18)0.0621 (4)
O2−0.26962 (16)0.96353 (18)0.26213 (18)0.0583 (4)
C1−0.3979 (3)0.8474 (3)−0.1498 (3)0.0745 (8)
H1A−0.32230.8095−0.17990.089*
H1B−0.42170.9263−0.21020.089*
C2−0.5078 (3)0.7549 (3)−0.1810 (4)0.0786 (8)
H2A−0.48390.6779−0.11920.118*
H2B−0.52820.7322−0.29010.118*
H2C−0.58290.7942−0.15390.118*
C3−0.1754 (3)1.0198 (4)0.3917 (4)0.0835 (9)
H3A−0.15291.10710.36480.1*
H3B−0.09620.96780.41350.1*
C4−0.2321 (4)1.0239 (3)0.5302 (3)0.0873 (9)
H4A−0.31181.07320.5070.131*
H4B−0.17131.06420.61530.131*
H4C−0.25030.93690.55920.131*
U11U22U33U12U13U23
Ni10.0394 (2)0.0400 (2)0.0513 (2)−0.00037 (13)0.01666 (15)0.00300 (14)
P10.0433 (3)0.0526 (3)0.0531 (3)−0.0052 (2)0.0188 (2)0.0003 (2)
S10.0587 (4)0.0458 (3)0.0936 (5)0.0031 (2)0.0342 (3)0.0150 (3)
S20.0514 (3)0.0525 (3)0.0849 (4)0.0098 (2)0.0300 (3)0.0166 (3)
O10.0524 (9)0.0873 (12)0.0500 (8)−0.0183 (8)0.0184 (7)−0.0112 (8)
O20.0519 (9)0.0756 (10)0.0502 (8)−0.0125 (8)0.0171 (7)−0.0067 (8)
C10.0777 (18)0.097 (2)0.0518 (13)−0.0140 (16)0.0204 (12)−0.0100 (13)
C20.0576 (15)0.100 (2)0.0758 (17)−0.0038 (15)0.0089 (12)−0.0278 (16)
C30.0717 (18)0.113 (2)0.0635 (16)−0.0253 (17)0.0093 (13)−0.0236 (16)
C40.108 (3)0.093 (2)0.0587 (16)−0.0009 (19)0.0146 (16)−0.0152 (15)
Ni1—S22.2253 (6)C1—C21.472 (4)
Ni1—S2i2.2253 (6)C1—H1A0.97
Ni1—S12.2254 (6)C1—H1B0.97
Ni1—S1i2.2254 (6)C2—H2A0.96
Ni1—P12.8382 (5)C2—H2B0.96
Ni1—P1i2.8382 (5)C2—H2C0.96
P1—O11.5660 (17)C3—C41.464 (4)
P1—O21.5700 (16)C3—H3A0.97
P1—S11.9876 (8)C3—H3B0.97
P1—S21.9890 (8)C4—H4A0.96
O1—C11.459 (3)C4—H4B0.96
O2—C31.449 (3)C4—H4C0.96
S2—Ni1—S2i180C1—O1—P1121.83 (15)
S2—Ni1—S188.41 (2)C3—O2—P1120.60 (17)
S2i—Ni1—S191.59 (2)O1—C1—C2108.3 (2)
S2—Ni1—S1i91.59 (2)O1—C1—H1A110
S2i—Ni1—S1i88.41 (2)C2—C1—H1A110
S1—Ni1—S1i180O1—C1—H1B110
S2—Ni1—P144.230 (19)C2—C1—H1B110
S2i—Ni1—P1135.770 (19)H1A—C1—H1B108.4
S1—Ni1—P144.194 (19)C1—C2—H2A109.5
S1i—Ni1—P1135.81 (2)C1—C2—H2B109.5
S2—Ni1—P1i135.770 (19)H2A—C2—H2B109.5
S2i—Ni1—P1i44.230 (19)C1—C2—H2C109.5
S1—Ni1—P1i135.81 (2)H2A—C2—H2C109.5
S1i—Ni1—P1i44.194 (19)H2B—C2—H2C109.5
P1—Ni1—P1i180O2—C3—C4109.2 (3)
O1—P1—O296.20 (9)O2—C3—H3A109.8
O1—P1—S1114.85 (8)C4—C3—H3A109.8
O2—P1—S1114.18 (8)O2—C3—H3B109.8
O1—P1—S2115.13 (8)C4—C3—H3B109.8
O2—P1—S2114.58 (8)H3A—C3—H3B108.3
S1—P1—S2102.58 (3)C3—C4—H4A109.5
O1—P1—Ni1133.63 (6)C3—C4—H4B109.5
O2—P1—Ni1130.17 (6)H4A—C4—H4B109.5
S1—P1—Ni151.30 (2)C3—C4—H4C109.5
S2—P1—Ni151.30 (2)H4A—C4—H4C109.5
P1—S1—Ni184.50 (3)H4B—C4—H4C109.5
P1—S2—Ni184.47 (3)
Ni1—S22.2253 (6)
Ni1—S12.2254 (6)
P1—S11.9876 (8)
P1—S21.9890 (8)
S2—Ni1—S188.41 (2)
S1—P1—S2102.58 (3)
P1—S1—Ni184.50 (3)
P1—S2—Ni184.47 (3)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  In search of molecular precursors for cadmium sulfide-new complexes with a sulfur-rich kernel: cadmium(ii) tri-tert-butoxysilanethiolates with additional diethyldithiocarbamato ligand.

Authors:  Anna Kropidłowska; Jarosław Chojnacki; Amir Fahmi; Barbara Becker
Journal:  Dalton Trans       Date:  2008-10-30       Impact factor: 4.390

  2 in total

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