Literature DB >> 21582942

(5R,6S)-4-Isopropyl-5-methyl-6-phenyl-3-propanoyl-2H-1,3,4-oxadiazinan-2-one.

Dishant Tailor1, Kate L Edler, David M Casper, Shawn R Hitchcock, Gregory M Ferrence.   

Abstract

The title compound, C(16)H(22)N(2)O(3), was synthesized during the course of a study on (1R,2S)-norephedrine-derived 1,3,4-oxadiazinan-2-ones. The conformation adopted by the isopropyl group is pseudo-axial relative to the oxadiazinan core. The allylic strain contributes to this conformational arrangement.

Entities:  

Year:  2009        PMID: 21582942      PMCID: PMC2969394          DOI: 10.1107/S1600536809022363

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background, see: Casper, Blackburn et al. (2002 ▶); Casper, Burgeson et al. (2002 ▶); Casper & Hitchcock (2003 ▶); Evans et al. (1981 ▶); Ferrence et al. (2003 ▶), Hitchcock et al. (2001 ▶); Trepanier et al. (1968 ▶). The synthesis of the title compound is described by Hitchcock et al. (2004 ▶). For ring puckering analysis, see: Boeyens (1978 ▶); Cremer & Pople (1975 ▶); Spek (2009 ▶). For non-classical hydrogen bonding, see: Steiner (1996 ▶).

Experimental

Crystal data

C16H22N2O3 M = 290.36 Orthorhombic, a = 6.8644 (3) Å b = 10.8370 (5) Å c = 21.2348 (10) Å V = 1579.65 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 140 K 0.45 × 0.29 × 0.2 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS in SAINT-Plus; Bruker, 2003 ▶) T min = 0.878, T max = 0.983 16184 measured reflections 2263 independent reflections 2231 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.099 S = 1.18 2263 reflections 190 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022363/zl2203sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022363/zl2203Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 2
C16H22N2O3F(000) = 624
Mr = 290.36Dx = 1.221 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7989 reflections
a = 6.8644 (3) Åθ = 2.7–30.4°
b = 10.8370 (5) ŵ = 0.09 mm1
c = 21.2348 (10) ÅT = 140 K
V = 1579.65 (12) Å3Needle, colourless
Z = 40.45 × 0.29 × 0.2 mm
Bruker SMART APEX CCD diffractometer2263 independent reflections
Radiation source: sealed tube2231 reflections with I > 2σ(I)
graphiteRint = 0.022
ω scansθmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS in SAINT-Plus; Bruker, 2003)h = −9→9
Tmin = 0.878, Tmax = 0.983k = −14→14
16184 measured reflectionsl = −28→27
Refinement on F20 restraints
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.0467P)2 + 0.4577P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.099(Δ/σ)max < 0.001
S = 1.18Δρmax = 0.32 e Å3
2263 reflectionsΔρmin = −0.21 e Å3
190 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.75439 (18)0.26491 (11)0.44189 (6)0.0196 (3)
C20.8863 (3)0.34214 (16)0.41773 (8)0.0188 (3)
N30.8136 (2)0.44240 (13)0.38381 (7)0.0178 (3)
N40.6120 (2)0.47290 (13)0.39003 (6)0.0166 (3)
C50.5006 (2)0.36039 (15)0.37440 (7)0.0165 (3)
H50.35930.38030.37960.020*
C60.5509 (2)0.25838 (16)0.42207 (8)0.0163 (3)
H60.46830.27170.46020.020*
C70.5138 (3)0.12801 (16)0.39890 (8)0.0187 (3)
C80.6638 (3)0.05224 (17)0.37881 (9)0.0262 (4)
H80.79460.08060.38070.031*
C90.6234 (4)−0.06520 (19)0.35596 (10)0.0326 (5)
H90.7270−0.11660.34210.039*
C100.4342 (4)−0.10773 (17)0.35327 (9)0.0320 (5)
H100.4073−0.18830.33800.038*
C110.2841 (3)−0.03214 (19)0.37300 (10)0.0315 (4)
H110.1535−0.06080.37100.038*
C120.3230 (3)0.08577 (17)0.39586 (9)0.0251 (4)
H120.21910.13730.40940.030*
C130.5331 (3)0.32666 (16)0.30550 (8)0.0208 (3)
H13A0.49710.39680.27880.031*
H13B0.45230.25520.29460.031*
H13C0.67060.30630.29880.031*
C140.5736 (3)0.52506 (17)0.45405 (8)0.0225 (4)
H140.60170.46070.48650.027*
C150.7025 (3)0.63686 (18)0.46590 (10)0.0310 (4)
H15A0.83960.61230.46320.046*
H15B0.67560.67000.50790.046*
H15C0.67520.70020.43420.046*
C160.3600 (3)0.5623 (2)0.45843 (11)0.0344 (5)
H16B0.27760.48990.45110.052*
H16A0.33180.62530.42660.052*
H16C0.33340.59580.50040.052*
C170.9228 (2)0.50008 (16)0.33572 (8)0.0195 (3)
C180.8239 (3)0.60532 (17)0.30136 (9)0.0245 (4)
H18A0.72240.57180.27300.029*
H18B0.75940.66010.33230.029*
C190.9691 (3)0.6793 (2)0.26320 (11)0.0344 (5)
H19C0.90130.74650.24140.052*
H19B1.03170.62540.23220.052*
H19A1.06820.71390.29130.052*
O201.08450 (19)0.46487 (14)0.32269 (7)0.0296 (3)
O211.05596 (18)0.32428 (13)0.42830 (6)0.0266 (3)
U11U22U33U12U13U23
O10.0168 (6)0.0205 (6)0.0214 (6)−0.0011 (5)−0.0033 (5)0.0057 (5)
C20.0173 (7)0.0213 (8)0.0177 (7)0.0005 (7)−0.0004 (6)0.0014 (6)
N30.0122 (6)0.0190 (6)0.0222 (7)0.0004 (6)0.0001 (5)0.0033 (5)
N40.0121 (6)0.0184 (6)0.0194 (6)0.0011 (5)0.0013 (5)−0.0003 (5)
C50.0144 (7)0.0168 (7)0.0183 (7)0.0007 (6)−0.0004 (6)0.0017 (6)
C60.0126 (7)0.0188 (7)0.0174 (7)−0.0009 (6)0.0006 (6)0.0014 (6)
C70.0216 (8)0.0183 (7)0.0163 (7)−0.0009 (7)0.0006 (6)0.0015 (6)
C80.0260 (9)0.0229 (8)0.0297 (9)0.0018 (8)0.0019 (8)−0.0018 (7)
C90.0420 (12)0.0240 (9)0.0318 (10)0.0069 (9)0.0038 (9)−0.0036 (8)
C100.0539 (13)0.0182 (8)0.0239 (9)−0.0074 (9)−0.0026 (9)−0.0011 (7)
C110.0337 (10)0.0287 (10)0.0322 (10)−0.0126 (9)−0.0017 (9)0.0020 (8)
C120.0238 (9)0.0230 (8)0.0287 (9)−0.0032 (8)0.0008 (8)0.0002 (7)
C130.0223 (8)0.0226 (8)0.0176 (7)−0.0019 (8)−0.0014 (6)0.0010 (6)
C140.0281 (9)0.0190 (7)0.0203 (8)−0.0011 (7)0.0038 (7)−0.0027 (6)
C150.0372 (11)0.0242 (9)0.0315 (9)−0.0071 (8)−0.0018 (9)−0.0061 (8)
C160.0311 (10)0.0337 (10)0.0384 (11)0.0030 (9)0.0099 (9)−0.0119 (9)
C170.0172 (7)0.0208 (8)0.0206 (7)−0.0032 (7)0.0000 (6)0.0024 (6)
C180.0202 (8)0.0239 (8)0.0295 (9)0.0003 (8)0.0032 (7)0.0086 (7)
C190.0281 (10)0.0326 (10)0.0424 (11)−0.0031 (9)0.0066 (9)0.0167 (9)
O200.0183 (6)0.0387 (8)0.0318 (7)0.0052 (6)0.0061 (5)0.0110 (6)
O210.0160 (6)0.0325 (7)0.0314 (7)0.0020 (6)−0.0018 (5)0.0102 (6)
O1—C21.336 (2)C11—H110.9500
O1—C61.460 (2)C12—H120.9500
C2—O211.202 (2)C13—H13A0.9800
C2—N31.396 (2)C13—H13B0.9800
N3—C171.413 (2)C13—H13C0.9800
N3—N41.4291 (19)C14—C151.521 (3)
N4—C51.477 (2)C14—C161.523 (3)
N4—C141.496 (2)C14—H141.0000
C5—C131.524 (2)C15—H15A0.9800
C5—C61.538 (2)C15—H15B0.9800
C5—H51.0000C15—H15C0.9800
C6—C71.518 (2)C16—H16B0.9800
C6—H61.0000C16—H16A0.9800
C7—C81.384 (3)C16—H16C0.9800
C7—C121.389 (3)C17—O201.206 (2)
C8—C91.390 (3)C17—C181.515 (2)
C8—H80.9500C18—C191.514 (3)
C9—C101.379 (3)C18—H18A0.9900
C9—H90.9500C18—H18B0.9900
C10—C111.381 (3)C19—H19C0.9800
C10—H100.9500C19—H19B0.9800
C11—C121.393 (3)C19—H19A0.9800
C2—O1—C6124.62 (13)C5—C13—H13A109.5
O21—C2—O1118.98 (16)C5—C13—H13B109.5
O21—C2—N3124.62 (16)H13A—C13—H13B109.5
O1—C2—N3116.34 (15)C5—C13—H13C109.5
C2—N3—C17121.86 (14)H13A—C13—H13C109.5
C2—N3—N4118.59 (14)H13B—C13—H13C109.5
C17—N3—N4118.58 (14)N4—C14—C15110.40 (15)
N3—N4—C5106.83 (12)N4—C14—C16108.99 (15)
N3—N4—C14110.01 (13)C15—C14—C16109.78 (16)
C5—N4—C14115.14 (13)N4—C14—H14109.2
N4—C5—C13109.75 (13)C15—C14—H14109.2
N4—C5—C6109.23 (13)C16—C14—H14109.2
C13—C5—C6115.24 (14)C14—C15—H15A109.5
N4—C5—H5107.4C14—C15—H15B109.5
C13—C5—H5107.4H15A—C15—H15B109.5
C6—C5—H5107.4C14—C15—H15C109.5
O1—C6—C7107.41 (14)H15A—C15—H15C109.5
O1—C6—C5111.69 (13)H15B—C15—H15C109.5
C7—C6—C5114.71 (13)C14—C16—H16B109.5
O1—C6—H6107.6C14—C16—H16A109.5
C7—C6—H6107.6H16B—C16—H16A109.5
C5—C6—H6107.6C14—C16—H16C109.5
C8—C7—C12119.44 (17)H16B—C16—H16C109.5
C8—C7—C6121.81 (16)H16A—C16—H16C109.5
C12—C7—C6118.71 (15)O20—C17—N3120.94 (16)
C7—C8—C9120.16 (19)O20—C17—C18122.72 (16)
C7—C8—H8119.9N3—C17—C18116.33 (15)
C9—C8—H8119.9C19—C18—C17111.18 (16)
C10—C9—C8120.54 (19)C19—C18—H18A109.4
C10—C9—H9119.7C17—C18—H18A109.4
C8—C9—H9119.7C19—C18—H18B109.4
C9—C10—C11119.44 (18)C17—C18—H18B109.4
C9—C10—H10120.3H18A—C18—H18B108.0
C11—C10—H10120.3C18—C19—H19C109.5
C10—C11—C12120.46 (19)C18—C19—H19B109.5
C10—C11—H11119.8H19C—C19—H19B109.5
C12—C11—H11119.8C18—C19—H19A109.5
C7—C12—C11119.96 (18)H19C—C19—H19A109.5
C7—C12—H12120.0H19B—C19—H19A109.5
C11—C12—H12120.0
C6—O1—C2—O21−165.68 (17)O1—C6—C7—C12160.20 (15)
C6—O1—C2—N317.1 (2)C5—C6—C7—C12−75.0 (2)
O21—C2—N3—C1729.6 (3)C12—C7—C8—C9−0.2 (3)
O1—C2—N3—C17−153.40 (15)C6—C7—C8—C9−177.88 (17)
O21—C2—N3—N4−161.87 (17)C7—C8—C9—C10−0.3 (3)
O1—C2—N3—N415.2 (2)C8—C9—C10—C110.6 (3)
C2—N3—N4—C5−55.15 (18)C9—C10—C11—C12−0.4 (3)
C17—N3—N4—C5113.79 (15)C8—C7—C12—C110.3 (3)
C2—N3—N4—C1470.48 (18)C6—C7—C12—C11178.08 (16)
C17—N3—N4—C14−120.58 (16)C10—C11—C12—C70.0 (3)
N3—N4—C5—C13−64.81 (16)N3—N4—C14—C1556.73 (18)
C14—N4—C5—C13172.72 (14)C5—N4—C14—C15177.48 (15)
N3—N4—C5—C662.43 (16)N3—N4—C14—C16177.38 (15)
C14—N4—C5—C6−60.04 (17)C5—N4—C14—C16−61.87 (18)
C2—O1—C6—C7120.86 (16)C2—N3—C17—O20−0.7 (3)
C2—O1—C6—C5−5.7 (2)N4—N3—C17—O20−169.21 (16)
N4—C5—C6—O1−34.68 (18)C2—N3—C17—C18178.17 (16)
C13—C5—C6—O189.39 (17)N4—N3—C17—C189.6 (2)
N4—C5—C6—C7−157.20 (14)O20—C17—C18—C19−15.4 (3)
C13—C5—C6—C7−33.1 (2)N3—C17—C18—C19165.80 (17)
O1—C6—C7—C8−22.1 (2)O21—C2—C17—O2023.67 (17)
C5—C6—C7—C8102.74 (19)
D—H···AD—HH···AD···AD—H···A
C8—H8···O10.952.402.737 (2)101
C14—H14···O11.002.553.091 (2)114
C15—H15A···N30.982.502.839 (2)100
C5—H5···O20i1.002.423.263 (2)142
C16—H16B···O21i0.982.403.380 (3)175
C12—H12···O21i0.952.353.243 (2)156
C5—H5···O21i1.002.403.283 (2)147
C6—H6···O1ii1.002.583.543 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O10.952.402.737 (2)101
C14—H14⋯O11.002.553.091 (2)114
C15—H15A⋯N30.982.502.839 (2)100
C5—H5⋯O20i1.002.423.263 (2)142
C16—H16B⋯O21i0.982.403.380 (3)175
C12—H12⋯O21i0.952.353.243 (2)156
C5—H5⋯O21i1.002.403.283 (2)147
C6—H6⋯O1ii1.002.583.543 (2)163

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Conformational studies of N(3)-substituted [1,3,4]-oxadiazinan-2-ones.

Authors:  David M Casper; Jennifer R Blackburn; Christopher D Maroules; Tana Brady; Joel M Esken; Gregory M Ferrence; Jean M Standard; Shawn R Hitchcock
Journal:  J Org Chem       Date:  2002-12-13       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Toward the development of a structurally novel class of chiral auxiliaries: diastereoselective aldol reactions of a (1R,2S)-ephedrine-based 3,4,5,6-tetrahydro-2H-1,3,4-oxadiazin-2-one.

Authors:  David M Casper; James R Burgeson; Joel M Esken; Gregory M Ferrence; Shawn R Hitchcock
Journal:  Org Lett       Date:  2002-10-17       Impact factor: 6.005

4.  Synthesis and pharmacological evaluation of some tetrahydrooxadiazinones and some dihydroaminooxadiazines.

Authors:  D L Trepanier; J N Eble; G H Harris
Journal:  J Med Chem       Date:  1968-03       Impact factor: 7.446

5.  Intramolecular chiral relay at stereogenic nitrogen. Synthesis and application of a new chiral auxiliary derived from (1R,2S)-norephedrine and acetone.

Authors:  Shawn R Hitchcock; David M Casper; Jeremy F Vaughn; Jennifer M Finefield; Gregory M Ferrence; Joel M Esken
Journal:  J Org Chem       Date:  2004-02-06       Impact factor: 4.354

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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