Literature DB >> 21582922

(±)-syn-Isopropyl 4-(1,1,1,3,3,3-hexa-fluoro-propan-2-yl-oxy)-1-hydr-oxy-3-methyl-2-(prop-1-yn-yl)cyclo-pent-2-ene-carboxyl-ate.

Annika Gille1, Markus Schürmann, Hans Preut, Martin Hiersemann.   

Abstract

The title compound, C(16)H(18)F(6)O(4), was obtained through an unprecedented one-pot reaction sequence involving a Gosteli-Claisen rearrangement and a cyclo-isomerization. The constitution and relative configuration were determined by single-crystal X-ray diffraction analysis. In the crystal, mol-ecules are connected via O-H ⋯ O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582922      PMCID: PMC2969198          DOI: 10.1107/S1600536809023162

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation, see: Neises & Steglich (1978 ▶); Hiersemann (2000 ▶). For details of the Gosteli–Claisen rearrangement, see: Gosteli (1972 ▶); Landor & Black (1965 ▶).

Experimental

Crystal data

C16H18F6O4 M = 388.30 Triclinic, a = 6.0166 (4) Å b = 11.9075 (6) Å c = 13.2798 (8) Å α = 104.600 (5)° β = 91.775 (5)° γ = 96.955 (5)° V = 912.03 (10) Å3 Z = 2 Mo Kα radiation μ = 0.14 mm−1 T = 173 K 0.42 × 0.20 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.944, T max = 0.975 7349 measured reflections 3175 independent reflections 2089 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.106 S = 0.96 3175 reflections 240 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809023162/hg2521sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809023162/hg2521Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18F6O4Z = 2
Mr = 388.30F(000) = 400
Triclinic, P1Dx = 1.414 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0166 (4) ÅCell parameters from 3408 reflections
b = 11.9075 (6) Åθ = 2.7–25.0°
c = 13.2798 (8) ŵ = 0.14 mm1
α = 104.600 (5)°T = 173 K
β = 91.775 (5)°Block, colourless
γ = 96.955 (5)°0.42 × 0.20 × 0.18 mm
V = 912.03 (10) Å3
Oxford Diffraction Xcalibur S CCD diffractometer3175 independent reflections
Radiation source: Enhance (Mo) X-ray Source2089 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 16.0560 pixels mm-1θmax = 25.0°, θmin = 2.7°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −13→14
Tmin = 0.944, Tmax = 0.975l = −15→11
7349 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0599P)2] where P = (Fo2 + 2Fc2)/3
3175 reflections(Δ/σ)max < 0.001
240 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.29 e Å3
Experimental. CrysAlis RED (Oxford Diffraction 2008) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.8004 (4)0.56391 (17)0.16252 (16)0.1130 (8)
F21.0918 (3)0.49063 (18)0.10772 (12)0.1036 (7)
F30.7665 (3)0.39187 (15)0.06173 (11)0.0842 (6)
F41.0556 (2)0.43622 (12)0.40071 (10)0.0537 (4)
F50.9672 (2)0.59099 (11)0.36511 (11)0.0631 (5)
F61.2566 (2)0.51846 (13)0.30212 (11)0.0608 (4)
O10.0648 (2)0.15814 (11)0.13523 (10)0.0286 (4)
H10.02640.10790.07860.043*
O20.6874 (2)0.38842 (11)0.26452 (11)0.0310 (4)
O30.1934 (2)−0.05252 (12)0.05543 (11)0.0406 (4)
O40.4173 (2)−0.03491 (12)0.19701 (11)0.0391 (4)
C10.6115 (3)0.26537 (16)0.25431 (15)0.0243 (5)
H1A0.74290.22310.26090.029*
C20.4539 (3)0.25339 (16)0.33674 (15)0.0243 (5)
C30.2714 (3)0.17686 (16)0.29615 (15)0.0231 (4)
C40.2677 (3)0.13463 (16)0.17825 (14)0.0227 (4)
C50.4762 (3)0.20733 (17)0.15116 (15)0.0293 (5)
H5A0.56610.15620.10280.035*
H5B0.43110.26730.11770.035*
C60.9030 (3)0.41341 (17)0.23280 (16)0.0299 (5)
H60.96840.33840.20980.036*
C70.8883 (5)0.4666 (2)0.1413 (2)0.0605 (8)
C81.0461 (4)0.4918 (2)0.32484 (18)0.0397 (6)
C90.5107 (3)0.31553 (18)0.44862 (15)0.0367 (6)
H9A0.39430.29020.49120.055*
H9B0.51930.40020.45740.055*
H9C0.65570.29700.47080.055*
C100.0936 (3)0.13487 (17)0.35228 (15)0.0256 (5)
C11−0.0581 (3)0.09773 (18)0.39548 (16)0.0318 (5)
C12−0.2433 (4)0.0527 (2)0.44912 (19)0.0486 (6)
H12A−0.2256−0.02700.45250.073*
H12B−0.38580.05180.41090.073*
H12C−0.24280.10320.52000.073*
C130.2847 (3)0.00474 (17)0.13700 (15)0.0237 (5)
C140.4642 (4)−0.15683 (18)0.16071 (17)0.0392 (6)
H140.3778−0.19490.09260.047*
C150.7079 (4)−0.1520 (2)0.1452 (2)0.0602 (8)
H15A0.7475−0.10450.09630.090*
H15B0.7441−0.23150.11680.090*
H15C0.7929−0.11680.21210.090*
C160.3840 (5)−0.2186 (2)0.2411 (2)0.0710 (9)
H16A0.4691−0.18190.30780.107*
H16B0.4064−0.30110.21840.107*
H16C0.2241−0.21310.24950.107*
U11U22U33U12U13U23
F10.179 (2)0.0561 (12)0.1164 (16)0.0058 (12)−0.0384 (15)0.0547 (11)
F20.1085 (14)0.1364 (17)0.0573 (11)−0.0682 (13)0.0018 (10)0.0494 (11)
F30.1084 (12)0.0924 (13)0.0418 (9)−0.0499 (10)−0.0191 (9)0.0316 (8)
F40.0516 (8)0.0668 (10)0.0425 (8)−0.0019 (7)−0.0024 (6)0.0191 (7)
F50.0721 (9)0.0333 (8)0.0679 (10)0.0027 (7)0.0029 (8)−0.0145 (7)
F60.0357 (8)0.0757 (10)0.0675 (10)−0.0151 (7)0.0060 (7)0.0220 (8)
O10.0311 (7)0.0296 (8)0.0227 (8)0.0091 (6)−0.0052 (6)0.0008 (6)
O20.0303 (8)0.0201 (7)0.0417 (9)0.0021 (6)0.0045 (6)0.0069 (6)
O30.0513 (9)0.0306 (8)0.0333 (9)0.0110 (7)−0.0156 (8)−0.0043 (7)
O40.0503 (9)0.0288 (8)0.0346 (9)0.0142 (7)−0.0144 (7)−0.0006 (7)
C10.0238 (10)0.0183 (10)0.0301 (11)0.0032 (8)0.0018 (9)0.0050 (8)
C20.0275 (10)0.0239 (10)0.0219 (11)0.0061 (8)0.0003 (9)0.0058 (8)
C30.0251 (10)0.0231 (10)0.0214 (10)0.0055 (8)0.0020 (8)0.0051 (8)
C40.0215 (10)0.0265 (10)0.0198 (10)0.0046 (8)0.0000 (8)0.0050 (8)
C50.0327 (11)0.0312 (11)0.0228 (11)−0.0001 (9)0.0052 (9)0.0065 (9)
C60.0355 (11)0.0199 (10)0.0337 (12)−0.0011 (8)0.0092 (10)0.0073 (9)
C70.0795 (19)0.0498 (18)0.0488 (17)−0.0232 (15)−0.0063 (15)0.0228 (14)
C80.0365 (13)0.0399 (14)0.0404 (14)−0.0015 (10)0.0045 (11)0.0089 (11)
C90.0404 (12)0.0375 (13)0.0276 (12)0.0012 (10)−0.0024 (10)0.0022 (10)
C100.0291 (11)0.0266 (11)0.0219 (11)0.0053 (9)−0.0001 (9)0.0070 (9)
C110.0309 (12)0.0387 (13)0.0294 (12)0.0042 (10)0.0011 (10)0.0157 (10)
C120.0402 (13)0.0657 (17)0.0502 (16)0.0040 (12)0.0107 (12)0.0342 (13)
C130.0183 (9)0.0294 (11)0.0221 (11)0.0012 (8)0.0025 (9)0.0052 (9)
C140.0536 (14)0.0256 (12)0.0372 (13)0.0147 (10)−0.0072 (11)0.0026 (10)
C150.0656 (17)0.0441 (15)0.078 (2)0.0211 (13)0.0294 (15)0.0188 (14)
C160.079 (2)0.0405 (15)0.100 (2)0.0080 (14)0.0324 (18)0.0276 (16)
F1—C71.302 (3)C5—H5A0.9900
F2—C71.339 (3)C5—H5B0.9900
F3—C71.329 (3)C6—C81.507 (3)
F4—C81.341 (3)C6—C71.510 (3)
F5—C81.319 (2)C6—H61.0000
F6—C81.330 (2)C9—H9A0.9800
O1—C41.419 (2)C9—H9B0.9800
O1—H10.8400C9—H9C0.9800
O2—C61.397 (2)C10—C111.192 (3)
O2—C11.452 (2)C11—C121.461 (3)
O3—C131.200 (2)C12—H12A0.9800
O4—C131.318 (2)C12—H12B0.9800
O4—C141.474 (2)C12—H12C0.9800
C1—C21.492 (3)C14—C151.483 (3)
C1—C51.528 (3)C14—C161.502 (4)
C1—H1A1.0000C14—H141.0000
C2—C31.342 (2)C15—H15A0.9800
C2—C91.492 (3)C15—H15B0.9800
C3—C101.434 (3)C15—H15C0.9800
C3—C41.517 (3)C16—H16A0.9800
C4—C131.522 (3)C16—H16B0.9800
C4—C51.541 (3)C16—H16C0.9800
C4—O1—H1109.5F5—C8—F4106.86 (19)
C6—O2—C1115.42 (14)F6—C8—F4106.70 (18)
C13—O4—C14118.33 (14)F5—C8—C6113.48 (18)
O2—C1—C2109.65 (14)F6—C8—C6112.73 (19)
O2—C1—C5112.11 (17)F4—C8—C6109.13 (18)
C2—C1—C5105.10 (14)C2—C9—H9A109.5
O2—C1—H1A110.0C2—C9—H9B109.5
C2—C1—H1A110.0H9A—C9—H9B109.5
C5—C1—H1A110.0C2—C9—H9C109.5
C3—C2—C9127.42 (19)H9A—C9—H9C109.5
C3—C2—C1110.79 (16)H9B—C9—H9C109.5
C9—C2—C1121.69 (16)C11—C10—C3177.6 (2)
C2—C3—C10126.87 (18)C10—C11—C12179.6 (2)
C2—C3—C4112.41 (17)C11—C12—H12A109.5
C10—C3—C4120.72 (15)C11—C12—H12B109.5
O1—C4—C3108.58 (14)H12A—C12—H12B109.5
O1—C4—C13108.35 (13)C11—C12—H12C109.5
C3—C4—C13114.56 (17)H12A—C12—H12C109.5
O1—C4—C5112.55 (16)H12B—C12—H12C109.5
C3—C4—C5103.23 (14)O3—C13—O4124.56 (18)
C13—C4—C5109.61 (15)O3—C13—C4122.24 (17)
C1—C5—C4106.17 (16)O4—C13—C4113.11 (15)
C1—C5—H5A110.5O4—C14—C15107.02 (18)
C4—C5—H5A110.5O4—C14—C16106.87 (18)
C1—C5—H5B110.5C15—C14—C16115.0 (2)
C4—C5—H5B110.5O4—C14—H14109.3
H5A—C5—H5B108.7C15—C14—H14109.3
O2—C6—C8108.60 (17)C16—C14—H14109.3
O2—C6—C7109.24 (18)C14—C15—H15A109.5
C8—C6—C7113.26 (19)C14—C15—H15B109.5
O2—C6—H6108.5H15A—C15—H15B109.5
C8—C6—H6108.5C14—C15—H15C109.5
C7—C6—H6108.5H15A—C15—H15C109.5
F1—C7—F3108.0 (2)H15B—C15—H15C109.5
F1—C7—F2106.8 (2)C14—C16—H16A109.5
F3—C7—F2106.9 (2)C14—C16—H16B109.5
F1—C7—C6113.5 (2)H16A—C16—H16B109.5
F3—C7—C6110.3 (2)C14—C16—H16C109.5
F2—C7—C6111.1 (2)H16A—C16—H16C109.5
F5—C8—F6107.57 (18)H16B—C16—H16C109.5
C6—O2—C1—C2149.56 (16)O2—C6—C7—F160.4 (2)
C6—O2—C1—C5−94.11 (18)C8—C6—C7—F1−60.8 (3)
O2—C1—C2—C3133.92 (16)O2—C6—C7—F3−60.9 (3)
C5—C1—C2—C313.2 (2)C8—C6—C7—F3177.9 (2)
O2—C1—C2—C9−49.5 (2)O2—C6—C7—F2−179.27 (18)
C5—C1—C2—C9−170.23 (17)C8—C6—C7—F259.6 (3)
C9—C2—C3—C10−2.3 (3)O2—C6—C8—F5−58.6 (2)
C1—C2—C3—C10173.99 (18)C7—C6—C8—F563.0 (3)
C9—C2—C3—C4178.06 (18)O2—C6—C8—F6178.82 (17)
C1—C2—C3—C4−5.6 (2)C7—C6—C8—F6−59.6 (3)
C2—C3—C4—O1−123.92 (17)O2—C6—C8—F460.5 (2)
C10—C3—C4—O156.4 (2)C7—C6—C8—F4−178.0 (2)
C2—C3—C4—C13114.83 (18)C14—O4—C13—O32.1 (3)
C10—C3—C4—C13−64.8 (2)C14—O4—C13—C4−174.52 (16)
C2—C3—C4—C5−4.3 (2)O1—C4—C13—O325.9 (2)
C10—C3—C4—C5176.06 (16)C3—C4—C13—O3147.25 (18)
O2—C1—C5—C4−134.32 (16)C5—C4—C13—O3−97.3 (2)
C2—C1—C5—C4−15.27 (19)O1—C4—C13—O4−157.37 (16)
O1—C4—C5—C1128.89 (16)C3—C4—C13—O4−36.0 (2)
C3—C4—C5—C112.02 (18)C5—C4—C13—O479.5 (2)
C13—C4—C5—C1−110.46 (17)C13—O4—C14—C15115.9 (2)
C1—O2—C6—C8−119.38 (18)C13—O4—C14—C16−120.4 (2)
C1—O2—C6—C7116.65 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.842.102.8431 (17)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O3i0.842.102.8431 (17)148

Symmetry code: (i) .

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