Literature DB >> 21582919

2,2'-[1,1'-(Propane-1,3-diyldioxy-dinitrilo)diethyl-idyne]di-1-naphthol.

Wen-Kui Dong1, Jian-Chao Wu, Yin-Xia Sun, Li Li, Jian Yao.   

Abstract

The mol-ecule of the title compound, C(27)H(26)N(2)O(4), lies across a crystallographic inversion centre and adopts an l-shaped configuration. Within the mol-ecule, the two naphthalene units are approximately perpendicular, making a dihedral angle of 80.24 (5)°. The two intramolecular O-H⋯N hydrogen bonds, generate S(6) ring motifs. In the crystal structure, every mol-ecule links five other mol-ecules into an infinite cross-linked layered supra-molecular structure via inter-molecular C-H⋯O hydrogen bonds, C-H⋯π inter-actions and π-π stacking inter-actions [centroid-centroid distance = 3.956 (4) Å].

Entities:  

Year:  2009        PMID: 21582919      PMCID: PMC2969260          DOI: 10.1107/S1600536809023241

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the steric and electronic properties of Schiff bases, see: Yamada (1999 ▶). For background to this study, see: Dong et al. (2006 ▶). For related structures, see: Dong & Duan (2008 ▶); Dong et al. (2008a ▶,b ▶,c ▶,d ▶); Duan et al. (2007 ▶); He et al. (2008 ▶).

Experimental

Crystal data

C27H26N2O4 M = 442.50 Triclinic, a = 7.4411 (10) Å b = 8.8911 (16) Å c = 18.106 (2) Å α = 100.645 (1)° β = 94.331 (1)° γ = 106.329 (2)° V = 1119.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.50 × 0.42 × 0.37 mm

Data collection

Siemens SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.957, T max = 0.968 5800 measured reflections 3876 independent reflections 2325 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.145 S = 1.04 3876 reflections 298 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809023241/hg2527sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809023241/hg2527Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H26N2O4Z = 2
Mr = 442.50F(000) = 468
Triclinic, P1Dx = 1.313 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4411 (10) ÅCell parameters from 1962 reflections
b = 8.8911 (16) Åθ = 2.3–26.3°
c = 18.106 (2) ŵ = 0.09 mm1
α = 100.645 (1)°T = 298 K
β = 94.331 (1)°Block-like, colorless
γ = 106.329 (2)°0.50 × 0.42 × 0.37 mm
V = 1119.4 (3) Å3
Siemens SMART 1000 CCD area-detector diffractometer3876 independent reflections
Radiation source: fine-focus sealed tube2325 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→8
Tmin = 0.957, Tmax = 0.968k = −10→10
5800 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0669P)2 + 0.1652P] where P = (Fo2 + 2Fc2)/3
3876 reflections(Δ/σ)max < 0.001
298 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4304 (3)0.3291 (2)0.39356 (10)0.0472 (5)
N20.5352 (3)0.4359 (2)0.09736 (10)0.0490 (5)
O10.3227 (2)0.35088 (19)0.33130 (9)0.0531 (5)
O20.6102 (2)0.55995 (19)0.16190 (9)0.0568 (5)
O30.7381 (2)0.38979 (19)0.48069 (9)0.0567 (5)
H30.66930.39900.44530.085*
O40.2690 (2)0.2606 (2)−0.00541 (9)0.0589 (5)
H40.31760.32920.03320.088*
C10.4460 (3)0.4646 (3)0.29743 (12)0.0444 (6)
H1A0.55040.42640.28220.053*
H1B0.49710.56630.33360.053*
C20.3361 (3)0.4864 (3)0.22958 (12)0.0494 (6)
H2A0.23000.52160.24510.059*
H2B0.28640.38430.19360.059*
C30.4578 (4)0.6083 (3)0.19140 (13)0.0557 (7)
H3A0.37950.62530.15030.067*
H3B0.50880.70970.22780.067*
C40.1200 (3)0.1930 (3)0.42415 (14)0.0608 (7)
H4A0.07460.24440.38780.091*
H4B0.07180.21840.47100.091*
H4C0.07790.07890.40520.091*
C50.3322 (3)0.2511 (2)0.43736 (12)0.0421 (5)
C60.6336 (3)0.2932 (2)0.52118 (12)0.0409 (5)
C70.4391 (3)0.2236 (2)0.50250 (11)0.0385 (5)
C80.3456 (3)0.1201 (3)0.54803 (13)0.0488 (6)
H80.21560.07250.53660.059*
C90.4393 (4)0.0885 (3)0.60760 (13)0.0510 (6)
H90.37300.01890.63560.061*
C100.6365 (3)0.1598 (3)0.62776 (12)0.0445 (6)
C110.7339 (3)0.2654 (2)0.58449 (12)0.0413 (5)
C120.9311 (3)0.3417 (3)0.60585 (14)0.0552 (7)
H120.99720.41180.57810.066*
C131.0230 (4)0.3126 (3)0.66666 (16)0.0673 (8)
H131.15200.36360.68030.081*
C140.9279 (4)0.2076 (3)0.70901 (16)0.0667 (8)
H140.99330.18880.75040.080*
C150.7397 (4)0.1326 (3)0.69001 (14)0.0585 (7)
H150.67770.06210.71850.070*
C160.8658 (4)0.4430 (3)0.09754 (15)0.0681 (8)
H16A0.88290.51870.14470.102*
H16B0.93500.49520.06200.102*
H16C0.91120.35570.10580.102*
C170.6600 (3)0.3798 (3)0.06659 (12)0.0449 (6)
C180.4008 (3)0.1992 (3)−0.03454 (12)0.0419 (5)
C190.5894 (3)0.2506 (3)−0.00192 (12)0.0419 (5)
C200.7126 (3)0.1727 (3)−0.03704 (14)0.0518 (6)
H200.83900.2047−0.01610.062*
C210.6529 (3)0.0533 (3)−0.10000 (14)0.0552 (6)
H210.73820.0044−0.12090.066*
C220.4635 (3)0.0022 (3)−0.13423 (13)0.0460 (6)
C230.3358 (3)0.0756 (3)−0.10137 (12)0.0422 (5)
C240.1464 (4)0.0254 (3)−0.13600 (14)0.0582 (7)
H240.06120.0739−0.11470.070*
C250.0862 (4)−0.0921 (3)−0.19974 (16)0.0677 (8)
H25−0.0393−0.1237−0.22170.081*
C260.2131 (4)−0.1659 (3)−0.23247 (15)0.0669 (8)
H260.1715−0.2467−0.27610.080*
C270.3962 (4)−0.1200 (3)−0.20072 (14)0.0604 (7)
H270.4792−0.1697−0.22310.072*
U11U22U33U12U13U23
N10.0453 (12)0.0502 (11)0.0435 (11)0.0087 (9)0.0039 (9)0.0134 (9)
N20.0551 (13)0.0511 (12)0.0396 (11)0.0148 (10)0.0066 (10)0.0086 (9)
O10.0478 (10)0.0605 (10)0.0468 (9)0.0058 (8)0.0015 (8)0.0198 (8)
O20.0626 (11)0.0590 (11)0.0434 (10)0.0119 (9)0.0087 (8)0.0069 (8)
O30.0413 (9)0.0685 (11)0.0573 (10)0.0017 (8)0.0116 (8)0.0277 (9)
O40.0453 (10)0.0706 (12)0.0605 (11)0.0237 (9)0.0085 (8)0.0031 (9)
C10.0471 (14)0.0396 (12)0.0447 (13)0.0090 (11)0.0113 (11)0.0087 (10)
C20.0585 (16)0.0495 (14)0.0412 (13)0.0188 (12)0.0078 (11)0.0081 (11)
C30.0747 (19)0.0512 (15)0.0442 (14)0.0223 (13)0.0116 (13)0.0113 (11)
C40.0441 (15)0.0763 (18)0.0544 (16)0.0052 (13)0.0058 (12)0.0158 (14)
C50.0420 (13)0.0375 (12)0.0426 (13)0.0075 (10)0.0103 (11)0.0034 (10)
C60.0445 (13)0.0351 (12)0.0408 (13)0.0067 (10)0.0145 (11)0.0071 (10)
C70.0403 (13)0.0343 (11)0.0376 (12)0.0070 (10)0.0084 (10)0.0053 (9)
C80.0430 (13)0.0431 (13)0.0539 (15)0.0020 (11)0.0112 (12)0.0102 (11)
C90.0600 (16)0.0413 (13)0.0504 (15)0.0067 (12)0.0157 (13)0.0164 (11)
C100.0529 (15)0.0363 (12)0.0448 (14)0.0150 (11)0.0103 (12)0.0054 (10)
C110.0424 (13)0.0393 (12)0.0417 (13)0.0127 (10)0.0088 (10)0.0052 (10)
C120.0428 (14)0.0619 (16)0.0589 (16)0.0134 (12)0.0089 (12)0.0107 (13)
C130.0509 (16)0.0782 (19)0.0696 (19)0.0214 (14)−0.0028 (14)0.0092 (16)
C140.076 (2)0.0709 (18)0.0596 (17)0.0337 (16)−0.0010 (15)0.0152 (14)
C150.0749 (19)0.0511 (15)0.0553 (16)0.0245 (14)0.0129 (14)0.0161 (12)
C160.0544 (17)0.083 (2)0.0582 (17)0.0127 (14)0.0003 (13)0.0089 (14)
C170.0450 (14)0.0517 (14)0.0406 (13)0.0115 (11)0.0052 (11)0.0213 (11)
C180.0390 (13)0.0483 (13)0.0447 (13)0.0163 (11)0.0123 (11)0.0180 (11)
C190.0415 (13)0.0496 (13)0.0389 (13)0.0142 (11)0.0081 (10)0.0187 (10)
C200.0400 (14)0.0594 (16)0.0589 (16)0.0165 (12)0.0073 (12)0.0170 (13)
C210.0497 (16)0.0591 (16)0.0639 (17)0.0251 (13)0.0170 (13)0.0137 (13)
C220.0502 (15)0.0424 (13)0.0500 (14)0.0145 (11)0.0118 (12)0.0182 (11)
C230.0428 (13)0.0426 (13)0.0447 (13)0.0129 (10)0.0072 (11)0.0175 (10)
C240.0511 (16)0.0580 (16)0.0629 (17)0.0149 (13)0.0031 (13)0.0110 (13)
C250.0582 (17)0.0597 (17)0.074 (2)0.0070 (14)−0.0095 (15)0.0113 (15)
C260.083 (2)0.0475 (15)0.0576 (17)0.0083 (15)−0.0031 (16)0.0039 (13)
C270.074 (2)0.0469 (15)0.0600 (17)0.0194 (14)0.0116 (15)0.0090 (12)
N1—C51.284 (3)C10—C111.413 (3)
N1—O11.408 (2)C11—C121.422 (3)
N2—C171.287 (3)C12—C131.356 (3)
N2—O21.404 (2)C12—H120.9300
O1—C11.426 (2)C13—C141.391 (4)
O2—C31.427 (3)C13—H130.9300
O3—C61.350 (2)C14—C151.357 (4)
O3—H30.8200C14—H140.9300
O4—C181.345 (3)C15—H150.9300
O4—H40.8200C16—C171.498 (3)
C1—C21.497 (3)C16—H16A0.9600
C1—H1A0.9700C16—H16B0.9600
C1—H1B0.9700C16—H16C0.9600
C2—C31.514 (3)C17—C191.473 (3)
C2—H2A0.9700C18—C191.393 (3)
C2—H2B0.9700C18—C231.424 (3)
C3—H3A0.9700C19—C201.417 (3)
C3—H3B0.9700C20—C211.355 (3)
C4—C51.502 (3)C20—H200.9300
C4—H4A0.9600C21—C221.408 (3)
C4—H4B0.9600C21—H210.9300
C4—H4C0.9600C22—C231.405 (3)
C5—C71.469 (3)C22—C271.414 (3)
C6—C71.392 (3)C23—C241.410 (3)
C6—C111.418 (3)C24—C251.356 (3)
C7—C81.420 (3)C24—H240.9300
C8—C91.356 (3)C25—C261.401 (4)
C8—H80.9300C25—H250.9300
C9—C101.414 (3)C26—C271.355 (4)
C9—H90.9300C26—H260.9300
C10—C151.412 (3)C27—H270.9300
C5—N1—O1114.40 (18)C13—C12—C11120.2 (2)
C17—N2—O2113.84 (19)C13—C12—H12119.9
N1—O1—C1107.51 (15)C11—C12—H12119.9
N2—O2—C3108.21 (17)C12—C13—C14121.1 (3)
C6—O3—H3109.5C12—C13—H13119.4
C18—O4—H4109.5C14—C13—H13119.4
O1—C1—C2108.60 (18)C15—C14—C13120.1 (3)
O1—C1—H1A110.0C15—C14—H14119.9
C2—C1—H1A110.0C13—C14—H14119.9
O1—C1—H1B110.0C14—C15—C10121.1 (2)
C2—C1—H1B110.0C14—C15—H15119.4
H1A—C1—H1B108.4C10—C15—H15119.4
C1—C2—C3111.5 (2)C17—C16—H16A109.5
C1—C2—H2A109.3C17—C16—H16B109.5
C3—C2—H2A109.3H16A—C16—H16B109.5
C1—C2—H2B109.3C17—C16—H16C109.5
C3—C2—H2B109.3H16A—C16—H16C109.5
H2A—C2—H2B108.0H16B—C16—H16C109.5
O2—C3—C2112.91 (19)N2—C17—C19116.1 (2)
O2—C3—H3A109.0N2—C17—C16122.3 (2)
C2—C3—H3A109.0C19—C17—C16121.5 (2)
O2—C3—H3B109.0O4—C18—C19123.0 (2)
C2—C3—H3B109.0O4—C18—C23115.8 (2)
H3A—C3—H3B107.8C19—C18—C23121.2 (2)
C5—C4—H4A109.5C18—C19—C20117.3 (2)
C5—C4—H4B109.5C18—C19—C17122.1 (2)
H4A—C4—H4B109.5C20—C19—C17120.6 (2)
C5—C4—H4C109.5C21—C20—C19122.4 (2)
H4A—C4—H4C109.5C21—C20—H20118.8
H4B—C4—H4C109.5C19—C20—H20118.8
N1—C5—C7116.2 (2)C20—C21—C22120.9 (2)
N1—C5—C4122.4 (2)C20—C21—H21119.6
C7—C5—C4121.34 (19)C22—C21—H21119.6
O3—C6—C7122.7 (2)C23—C22—C21118.9 (2)
O3—C6—C11116.03 (19)C23—C22—C27118.5 (2)
C7—C6—C11121.28 (19)C21—C22—C27122.6 (2)
C6—C7—C8117.5 (2)C22—C23—C24118.9 (2)
C6—C7—C5122.24 (19)C22—C23—C18119.4 (2)
C8—C7—C5120.3 (2)C24—C23—C18121.7 (2)
C9—C8—C7122.2 (2)C25—C24—C23121.2 (3)
C9—C8—H8118.9C25—C24—H24119.4
C7—C8—H8118.9C23—C24—H24119.4
C8—C9—C10120.9 (2)C24—C25—C26120.0 (3)
C8—C9—H9119.5C24—C25—H25120.0
C10—C9—H9119.5C26—C25—H25120.0
C15—C10—C11118.6 (2)C27—C26—C25120.2 (2)
C15—C10—C9123.0 (2)C27—C26—H26119.9
C11—C10—C9118.4 (2)C25—C26—H26119.9
C10—C11—C6119.6 (2)C26—C27—C22121.2 (3)
C10—C11—C12118.8 (2)C26—C27—H27119.4
C6—C11—C12121.6 (2)C22—C27—H27119.4
C5—N1—O1—C1168.65 (19)C13—C14—C15—C10−0.5 (4)
C17—N2—O2—C3−178.59 (18)C11—C10—C15—C141.0 (4)
N1—O1—C1—C2178.37 (17)C9—C10—C15—C14−177.7 (2)
O1—C1—C2—C3178.99 (18)O2—N2—C17—C19−179.28 (16)
N2—O2—C3—C272.6 (2)O2—N2—C17—C16−0.2 (3)
C1—C2—C3—O263.2 (3)O4—C18—C19—C20178.18 (19)
O1—N1—C5—C7179.14 (16)C23—C18—C19—C20−1.3 (3)
O1—N1—C5—C4−1.8 (3)O4—C18—C19—C17−1.4 (3)
O3—C6—C7—C8178.1 (2)C23—C18—C19—C17179.14 (19)
C11—C6—C7—C8−1.7 (3)N2—C17—C19—C184.1 (3)
O3—C6—C7—C5−0.5 (3)C16—C17—C19—C18−175.1 (2)
C11—C6—C7—C5179.8 (2)N2—C17—C19—C20−175.5 (2)
N1—C5—C7—C67.2 (3)C16—C17—C19—C205.4 (3)
C4—C5—C7—C6−171.8 (2)C18—C19—C20—C210.3 (3)
N1—C5—C7—C8−171.3 (2)C17—C19—C20—C21179.9 (2)
C4—C5—C7—C89.7 (3)C19—C20—C21—C220.8 (4)
C6—C7—C8—C9−0.1 (3)C20—C21—C22—C23−0.9 (3)
C5—C7—C8—C9178.5 (2)C20—C21—C22—C27178.8 (2)
C7—C8—C9—C100.8 (4)C21—C22—C23—C24179.4 (2)
C8—C9—C10—C15178.9 (2)C27—C22—C23—C24−0.3 (3)
C8—C9—C10—C110.2 (3)C21—C22—C23—C18−0.1 (3)
C15—C10—C11—C6179.3 (2)C27—C22—C23—C18−179.8 (2)
C9—C10—C11—C6−1.9 (3)O4—C18—C23—C22−178.33 (19)
C15—C10—C11—C12−0.8 (3)C19—C18—C23—C221.2 (3)
C9—C10—C11—C12178.0 (2)O4—C18—C23—C242.2 (3)
O3—C6—C11—C10−177.05 (19)C19—C18—C23—C24−178.3 (2)
C7—C6—C11—C102.7 (3)C22—C23—C24—C250.3 (3)
O3—C6—C11—C123.1 (3)C18—C23—C24—C25179.8 (2)
C7—C6—C11—C12−177.2 (2)C23—C24—C25—C26−0.1 (4)
C10—C11—C12—C130.2 (3)C24—C25—C26—C27−0.1 (4)
C6—C11—C12—C13−179.9 (2)C25—C26—C27—C220.2 (4)
C11—C12—C13—C140.3 (4)C23—C22—C27—C260.1 (3)
C12—C13—C14—C15−0.2 (4)C21—C22—C27—C26−179.7 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···N10.821.832.543 (2)145
O4—H4···N20.821.822.540 (2)146
C12—H12···O3i0.932.683.588 (3)166
C1—H1B···Cg1ii0.972.783.480 (2)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯N10.821.832.543 (2)145
O4—H4⋯N20.821.822.540 (2)146
C12—H12⋯O3i0.932.683.588 (3)166
C1—H1BCg1ii0.972.783.480 (2)129

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of the C6–C15 ring.

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  6,6'-Dihydr-oxy-2,2'-[(propane-1,3-diyl-dioxy)bis-(nitrilo-methyl-idyne)]diphenol.

Authors:  Wen-Kui Dong; Xue-Ni He; Yong-Hong Guan; Li Xu; Zong-Li Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

3.  2,2'-Dichloro-1,1'-[(propane-1,3-diyldi-oxy)bis-(nitrilo-methyl-idyne)]dibenzene.

Authors:  Xue-Ni He; Wen-Kui Dong; Wen-Juan Bai; Hai-Bo Yan; Zhong-Wu Lv
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-19

4.  3,3'-Dibromo-1,1'-[(propane-1,3-diyl-dioxy)-bis(nitrilo-methyl-idyne)]dibenzene.

Authors:  Wen-Kui Dong; Yu-Jie Ding; Ya-Ling Luo; Zhong-Wu Lv; Li Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-21

5.  2,2'-[1,1'-(Propane-1,3-diyldioxy-dinitrilo)diethyl-idyne]diphenol.

Authors:  Wen-Kui Dong; Xue-Ni He; Jin-Kui Zhong; Xiao Chen; Tian-Zhi Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17
  5 in total

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