Literature DB >> 21582910

Dimethyl 1-cyano-methyl-1H-pyrazole-3,5-dicarboxyl-ate.

Zhi-Rong Qu1.   

Abstract

The title mol-ecule, C(9)H(9)N(3)O(4), syhthesized from 1H-pyrazole-3,5-dicarboxylic acid and 2-bromo-acetonitrile, is approximately planar; the inter-planar angles between the pyrazole ring and the mean planes of the two carboxylate units and the cyanomethyl unit are 4.49 (10), 5.56 (9) and 5.03 (19)°, respectively. In the crystal, inversion dimers linked by pairs of weak C-H ⋯O bonds occur, and the packing is further stabilized by aromatic π-π stacking [centroid-centroid separation = 3.793 (4) Å].

Entities:  

Year:  2009        PMID: 21582910      PMCID: PMC2969226          DOI: 10.1107/S160053680902306X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the preparation of nitrile compounds, see: Lee et al.(1989 ▶); Chambers et al. (1985 ▶). For the chemistry of pyrazole-related compounds, see: Radl et al. (2000 ▶); Dai et al. (2008 ▶); Fu et al. (2007 ▶); Xiao et al. (2008 ▶).

Experimental

Crystal data

C9H9N3O4 M = 223.19 Triclinic, a = 6.865 (6) Å b = 7.779 (7) Å c = 11.133 (11) Å α = 71.633 (8)° β = 80.625 (10)° γ = 68.195 (6)° V = 523.2 (8) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.25 × 0.17 × 0.15 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.977, T max = 0.983 5303 measured reflections 2356 independent reflections 1363 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.177 S = 1.07 2356 reflections 147 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680902306X/kp2222sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902306X/kp2222Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N3O4V = 523.2 (8) Å3
Mr = 223.19Z = 2
Triclinic, P1F(000) = 232
a = 6.865 (6) ÅDx = 1.417 Mg m3
b = 7.779 (7) ÅMo Kα radiation, λ = 0.71073 Å
c = 11.133 (11) ŵ = 0.11 mm1
α = 71.633 (8)°T = 293 K
β = 80.625 (10)°Prism, colourless
γ = 68.195 (6)°0.25 × 0.17 × 0.15 mm
Rigaku SCXmini diffractometer2356 independent reflections
Radiation source: fine-focus sealed tube1363 reflections with I > 2σ(I)
graphiteRint = 0.042
CCD_Profile_fitting scansθmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −8→8
Tmin = 0.977, Tmax = 0.983k = −10→10
5303 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0798P)2 + 0.0028P] where P = (Fo2 + 2Fc2)/3
2356 reflections(Δ/σ)max < 0.001
147 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3907 (4)0.3854 (3)0.8442 (2)0.0532 (6)
C20.3416 (4)0.3412 (3)0.9739 (2)0.0526 (6)
H20.37110.21921.03110.063*
C30.2401 (4)0.5159 (3)1.0001 (2)0.0499 (6)
C40.1549 (4)0.5643 (4)1.1201 (2)0.0546 (6)
C50.1088 (6)0.4259 (5)1.3408 (3)0.0854 (10)
H5A0.20160.47381.36580.128*
H5B0.11490.30331.39890.128*
H5C−0.03220.51531.34140.128*
C60.5019 (4)0.2473 (4)0.7684 (3)0.0598 (7)
C70.6214 (6)0.2060 (4)0.5643 (3)0.0843 (10)
H7A0.76590.14170.58510.126*
H7B0.61360.28140.47730.126*
H7C0.55510.11210.57720.126*
C80.1385 (5)0.8634 (3)0.8624 (3)0.0684 (8)
H8A−0.01040.89710.88650.082*
H8B0.20230.90570.91420.082*
C90.1666 (5)0.9611 (4)0.7305 (3)0.0727 (8)
N10.2333 (3)0.6541 (3)0.88623 (19)0.0519 (5)
N20.3246 (3)0.5768 (3)0.7904 (2)0.0554 (6)
N30.1808 (6)1.0496 (4)0.6284 (3)0.1128 (12)
O10.0817 (3)0.7247 (3)1.13202 (17)0.0727 (6)
O20.1727 (3)0.4040 (3)1.21396 (18)0.0693 (6)
O30.5740 (4)0.0765 (3)0.8165 (2)0.0895 (8)
O40.5140 (3)0.3323 (2)0.64578 (17)0.0697 (6)
U11U22U33U12U13U23
C10.0572 (15)0.0334 (12)0.0590 (16)−0.0092 (11)−0.0024 (12)−0.0072 (11)
C20.0561 (15)0.0386 (13)0.0536 (16)−0.0145 (12)−0.0002 (12)−0.0036 (11)
C30.0509 (14)0.0420 (14)0.0503 (15)−0.0140 (11)−0.0028 (11)−0.0062 (11)
C40.0588 (16)0.0464 (15)0.0551 (16)−0.0175 (12)−0.0031 (12)−0.0099 (12)
C50.114 (3)0.086 (2)0.0453 (17)−0.033 (2)0.0022 (16)−0.0077 (15)
C60.0692 (18)0.0396 (14)0.0589 (17)−0.0130 (13)−0.0013 (13)−0.0057 (12)
C70.110 (3)0.0609 (19)0.0632 (19)−0.0110 (17)0.0130 (17)−0.0222 (15)
C80.090 (2)0.0368 (13)0.0594 (18)−0.0099 (14)−0.0006 (15)−0.0041 (12)
C90.093 (2)0.0416 (14)0.066 (2)−0.0115 (14)0.0034 (16)−0.0100 (13)
N10.0597 (12)0.0375 (11)0.0487 (12)−0.0110 (9)−0.0022 (9)−0.0058 (9)
N20.0631 (13)0.0401 (12)0.0516 (13)−0.0097 (10)0.0019 (10)−0.0092 (9)
N30.167 (3)0.0614 (17)0.073 (2)−0.0194 (18)0.0156 (19)−0.0031 (15)
O10.0984 (15)0.0522 (12)0.0589 (12)−0.0172 (11)0.0024 (10)−0.0174 (9)
O20.0928 (14)0.0542 (11)0.0506 (11)−0.0238 (10)0.0010 (9)−0.0047 (8)
O30.136 (2)0.0370 (11)0.0682 (14)−0.0105 (11)0.0055 (13)−0.0070 (9)
O40.0914 (14)0.0451 (10)0.0536 (12)−0.0108 (10)0.0064 (10)−0.0083 (8)
C1—N21.344 (3)C6—O31.203 (3)
C1—C21.390 (4)C6—O41.320 (3)
C1—C61.483 (4)C7—O41.461 (3)
C2—C31.378 (3)C7—H7A0.9600
C2—H20.9300C7—H7B0.9600
C3—N11.374 (3)C7—H7C0.9600
C3—C41.472 (4)C8—C91.444 (4)
C4—O11.201 (3)C8—N11.464 (3)
C4—O21.330 (3)C8—H8A0.9700
C5—O21.453 (4)C8—H8B0.9700
C5—H5A0.9600C9—N31.139 (4)
C5—H5B0.9600N1—N21.342 (3)
C5—H5C0.9600
N2—C1—C2111.5 (2)O4—C6—C1113.0 (2)
N2—C1—C6121.5 (2)O4—C7—H7A109.5
C2—C1—C6127.0 (2)O4—C7—H7B109.5
C3—C2—C1105.6 (2)H7A—C7—H7B109.5
C3—C2—H2127.2O4—C7—H7C109.5
C1—C2—H2127.2H7A—C7—H7C109.5
N1—C3—C2105.9 (2)H7B—C7—H7C109.5
N1—C3—C4122.6 (2)C9—C8—N1111.2 (2)
C2—C3—C4131.5 (2)C9—C8—H8A109.4
O1—C4—O2124.9 (3)N1—C8—H8A109.4
O1—C4—C3125.2 (2)C9—C8—H8B109.4
O2—C4—C3110.0 (2)N1—C8—H8B109.4
O2—C5—H5A109.5H8A—C8—H8B108.0
O2—C5—H5B109.5N3—C9—C8175.4 (3)
H5A—C5—H5B109.5N2—N1—C3112.2 (2)
O2—C5—H5C109.5N2—N1—C8120.3 (2)
H5A—C5—H5C109.5C3—N1—C8127.5 (2)
H5B—C5—H5C109.5N1—N2—C1104.8 (2)
O3—C6—O4124.8 (3)C4—O2—C5116.9 (2)
O3—C6—C1122.2 (3)C6—O4—C7116.4 (2)
N2—C1—C2—C3−0.1 (3)C4—C3—N1—N2178.5 (2)
C6—C1—C2—C3179.7 (3)C2—C3—N1—C8178.9 (2)
C1—C2—C3—N10.1 (3)C4—C3—N1—C8−2.5 (4)
C1—C2—C3—C4−178.3 (3)C9—C8—N1—N2−2.1 (4)
N1—C3—C4—O1−3.7 (4)C9—C8—N1—C3178.9 (3)
C2—C3—C4—O1174.5 (3)C3—N1—N2—C10.1 (3)
N1—C3—C4—O2176.9 (2)C8—N1—N2—C1−179.0 (2)
C2—C3—C4—O2−4.8 (4)C2—C1—N2—N10.0 (3)
N2—C1—C6—O3175.0 (3)C6—C1—N2—N1−179.8 (2)
C2—C1—C6—O3−4.7 (4)O1—C4—O2—C5−3.5 (4)
N2—C1—C6—O4−4.3 (4)C3—C4—O2—C5175.9 (2)
C2—C1—C6—O4176.0 (2)O3—C6—O4—C70.8 (4)
N1—C8—C9—N3176 (5)C1—C6—O4—C7−180.0 (2)
C2—C3—N1—N2−0.1 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O3i0.932.333.256 (4)176
Group 1Group 2αCg–Cgτ
Cg1Cg1i0.033.793 (4)26.14
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O3i0.932.333.256 (4)176

Symmetry code: (i) .

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