Literature DB >> 21582907

4-Fluoro-N-[3-(2-fluoro-phen-yl)-4-methyl-2,3-dihydro-2-thienyl-idene]benzamide.

Aamer Saeed, Uzma Shaheen, Muhammad Latif, Michael Bolte.   

Abstract

In the title compound, C(17)H(12)F(2)N(2)OS, the planar thia-zole ring (r.m.s. deviation = 0.012 Å) makes dihedral angles of 15.08 (9) and 81.81 (6)° with the 4-fluoro-phenyl and 2-fluoro-phenyl rings, respectively. The 2-fluoro-phenyl ring is disordered over two orientations with site-occupancy factors of 0.810 (3) and 0.190 (3). The structure contains inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582907      PMCID: PMC2969331          DOI: 10.1107/S1600536809022314

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of imino-1,3-thia­zoline derivatives, see: Kim et al. (2007 ▶); Vicini et al. (2006 ▶); Hosseinimehr et al. (2001 ▶); Zhang et al. (2000 ▶); Pietrancosta et al. (2006 ▶). For details of the synthesis, see: Saeed et al. (2008a ▶). For a related structure, see: Saeed et al. (2008b ▶).

Experimental

Crystal data

C17H12F2N2OS M = 330.35 Orthorhombic, a = 7.0982 (14) Å b = 11.423 (2) Å c = 18.949 (4) Å V = 1536.5 (5) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 173 K 0.36 × 0.34 × 0.28 mm

Data collection

Stoe IPDS-II two-circle diffractometer Absorption correction: multi-scan (MULABS; Spek, 2009 ▶; Blessing, 1995 ▶) T min = 0.920, T max = 0.937 10484 measured reflections 3531 independent reflections 3213 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.082 S = 0.99 3531 reflections 219 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.26 e Å−3 Absolute structure: Flack (1983 ▶), 1491 Friedel pairs Flack parameter: −0.15 (6) Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022314/bi2375sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022314/bi2375Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12F2N2OSF(000) = 680
Mr = 330.35Dx = 1.428 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9675 reflections
a = 7.0982 (14) Åθ = 3.4–27.8°
b = 11.423 (2) ŵ = 0.24 mm1
c = 18.949 (4) ÅT = 173 K
V = 1536.5 (5) Å3Block, colourless
Z = 40.36 × 0.34 × 0.28 mm
Stoe IPDS-II two-circle diffractometer3531 independent reflections
Radiation source: fine-focus sealed tube3213 reflections with I > 2σ(I)
graphiteRint = 0.046
ω scansθmax = 27.6°, θmin = 3.4°
Absorption correction: multi-scan (MULABS; Spek, 2009; Blessing, 1995)h = −8→9
Tmin = 0.920, Tmax = 0.937k = −12→14
10484 measured reflectionsl = −24→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.052P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
3531 reflectionsΔρmax = 0.15 e Å3
219 parametersΔρmin = −0.26 e Å3
0 restraintsAbsolute structure: Flack (1983), 1491 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.15 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.86255 (5)0.65177 (5)0.73205 (2)0.04103 (12)
N10.56925 (19)0.59033 (13)0.64274 (7)0.0316 (3)
O10.7594 (2)0.44060 (14)0.68401 (8)0.0520 (4)
F10.0840 (3)0.15356 (14)0.55262 (9)0.0825 (5)
F20.71228 (15)0.86728 (14)0.53579 (6)0.0406 (4)0.810 (3)
F2'0.2818 (7)0.7551 (6)0.7021 (3)0.048 (2)0.190 (3)
C10.6168 (2)0.47540 (16)0.65201 (8)0.0356 (4)
C20.67222 (19)0.66920 (16)0.67514 (8)0.0303 (3)
N30.63342 (18)0.78545 (13)0.66789 (7)0.0304 (3)
C40.7456 (2)0.86166 (18)0.70871 (8)0.0340 (4)
C50.8742 (2)0.80204 (19)0.74587 (9)0.0414 (4)
H50.96260.83810.77660.050*
C60.7117 (3)0.98996 (19)0.70565 (10)0.0436 (4)
H6A0.78341.02870.74320.065*
H6B0.57711.00560.71210.065*
H6C0.75231.02010.65970.065*
C110.4788 (3)0.39042 (17)0.62212 (8)0.0353 (4)
C120.5145 (3)0.27036 (19)0.62624 (10)0.0451 (4)
H120.63010.24350.64570.054*
C130.3827 (3)0.19005 (18)0.60216 (10)0.0513 (5)
H130.40620.10830.60520.062*
C140.2173 (3)0.2315 (2)0.57387 (11)0.0529 (5)
C150.1774 (3)0.3489 (2)0.56784 (11)0.0519 (5)
H150.06220.37470.54760.062*
C160.3098 (3)0.42878 (17)0.59203 (10)0.0405 (4)
H160.28540.51030.58810.049*
C210.48714 (19)0.82453 (15)0.62105 (8)0.0278 (3)
C220.5303 (2)0.86227 (15)0.55392 (8)0.0290 (3)
H220.65870.86610.54000.035*0.190 (3)
C230.3925 (2)0.89464 (15)0.50637 (8)0.0325 (3)
H230.42500.92010.46020.039*
C240.2054 (2)0.88918 (16)0.52746 (9)0.0348 (4)
H240.10850.91070.49540.042*
C250.1592 (2)0.8527 (2)0.59472 (9)0.0439 (4)
H250.03090.84990.60890.053*
C260.2997 (2)0.8203 (2)0.64164 (9)0.0403 (4)
H260.26750.79450.68770.048*0.810 (3)
U11U22U33U12U13U23
S10.02961 (17)0.0565 (3)0.0369 (2)0.00724 (19)−0.00870 (15)0.0061 (2)
N10.0334 (6)0.0324 (8)0.0290 (6)0.0029 (5)−0.0029 (5)0.0041 (6)
O10.0474 (7)0.0475 (9)0.0610 (8)0.0136 (6)−0.0158 (6)0.0073 (7)
F10.1076 (11)0.0365 (7)0.1034 (11)−0.0068 (8)−0.0504 (9)−0.0073 (8)
F20.0270 (6)0.0573 (10)0.0374 (6)−0.0039 (5)0.0046 (4)0.0079 (6)
F2'0.032 (3)0.074 (5)0.038 (3)0.005 (3)0.006 (2)0.014 (3)
C10.0391 (8)0.0375 (9)0.0302 (7)0.0106 (8)−0.0003 (6)0.0046 (7)
C20.0263 (6)0.0403 (10)0.0242 (6)0.0023 (6)−0.0005 (5)0.0036 (6)
N30.0260 (5)0.0362 (7)0.0290 (6)−0.0027 (6)−0.0054 (5)0.0023 (5)
C40.0269 (6)0.0454 (11)0.0299 (7)−0.0076 (7)−0.0004 (5)−0.0033 (7)
C50.0288 (7)0.0603 (12)0.0351 (8)−0.0059 (7)−0.0074 (6)−0.0013 (7)
C60.0402 (8)0.0462 (12)0.0443 (9)−0.0112 (8)−0.0037 (7)−0.0079 (8)
C110.0460 (9)0.0325 (9)0.0275 (7)0.0087 (7)−0.0001 (6)0.0021 (6)
C120.0590 (11)0.0372 (10)0.0391 (9)0.0129 (9)−0.0036 (8)−0.0004 (8)
C130.0751 (13)0.0302 (10)0.0485 (10)0.0111 (9)−0.0098 (10)−0.0064 (8)
C140.0751 (13)0.0332 (11)0.0504 (11)−0.0010 (10)−0.0168 (10)−0.0057 (9)
C150.0656 (11)0.0348 (10)0.0553 (11)0.0055 (9)−0.0237 (9)−0.0007 (10)
C160.0525 (10)0.0295 (9)0.0395 (8)0.0064 (7)−0.0111 (7)0.0015 (8)
C210.0262 (6)0.0285 (8)0.0288 (7)−0.0004 (6)−0.0037 (5)0.0016 (6)
C220.0280 (6)0.0278 (8)0.0314 (7)−0.0019 (6)0.0010 (5)0.0002 (6)
C230.0409 (8)0.0299 (8)0.0267 (7)−0.0024 (7)−0.0022 (6)0.0021 (6)
C240.0335 (7)0.0363 (9)0.0346 (8)0.0029 (7)−0.0097 (6)−0.0014 (7)
C250.0258 (6)0.0679 (13)0.0379 (8)0.0020 (8)−0.0020 (6)0.0010 (9)
C260.0290 (7)0.0615 (13)0.0305 (7)−0.0027 (8)−0.0009 (6)0.0070 (8)
S1—C51.738 (2)C12—C131.388 (3)
S1—C21.7400 (15)C12—H120.950
N1—C21.313 (2)C13—C141.375 (3)
N1—C11.367 (2)C13—H130.950
O1—C11.245 (2)C14—C151.376 (3)
F1—C141.360 (3)C15—C161.387 (3)
F2—C221.3379 (18)C15—H150.950
F2'—C261.373 (6)C16—H160.950
C1—C111.491 (3)C21—C221.378 (2)
C2—N31.363 (2)C21—C261.387 (2)
N3—C41.411 (2)C22—C231.380 (2)
N3—C211.4370 (18)C22—H220.950
C4—C51.339 (2)C23—C241.388 (2)
C4—C61.486 (3)C23—H230.950
C5—H50.950C24—C251.380 (2)
C6—H6A0.980C24—H240.950
C6—H6B0.980C25—C261.386 (2)
C6—H6C0.980C25—H250.950
C11—C121.397 (3)C26—H260.950
C11—C161.399 (2)
C5—S1—C290.99 (8)F1—C14—C13119.0 (2)
C2—N1—C1117.49 (14)F1—C14—C15118.1 (2)
O1—C1—N1124.75 (18)C13—C14—C15122.9 (2)
O1—C1—C11120.75 (17)C14—C15—C16118.31 (19)
N1—C1—C11114.48 (14)C14—C15—H15120.8
N1—C2—N3120.60 (13)C16—C15—H15120.8
N1—C2—S1130.07 (14)C15—C16—C11120.64 (18)
N3—C2—S1109.32 (12)C15—C16—H16119.7
C2—N3—C4115.58 (14)C11—C16—H16119.7
C2—N3—C21120.72 (13)C22—C21—C26118.93 (14)
C4—N3—C21123.70 (15)C22—C21—N3120.45 (13)
C5—C4—N3111.06 (17)C26—C21—N3120.56 (14)
C5—C4—C6129.23 (16)F2—C22—C21117.72 (14)
N3—C4—C6119.71 (15)F2—C22—C23120.34 (14)
C4—C5—S1113.00 (13)C21—C22—C23121.94 (14)
C4—C5—H5123.5C21—C22—H22118.9
S1—C5—H5123.5C23—C22—H22119.1
C4—C6—H6A109.5C22—C23—C24118.55 (15)
C4—C6—H6B109.5C22—C23—H23120.7
H6A—C6—H6B109.5C24—C23—H23120.7
C4—C6—H6C109.5C25—C24—C23120.43 (14)
H6A—C6—H6C109.5C25—C24—H24119.8
H6B—C6—H6C109.5C23—C24—H24119.8
C12—C11—C16119.08 (18)C24—C25—C26120.12 (14)
C12—C11—C1119.91 (16)C24—C25—H25119.9
C16—C11—C1120.96 (16)C26—C25—H25119.9
C13—C12—C11120.54 (18)F2'—C26—C25127.8 (3)
C13—C12—H12119.7F2'—C26—C21110.0 (3)
C11—C12—H12119.7C25—C26—C21120.02 (15)
C14—C13—C12118.5 (2)C25—C26—H26119.9
C14—C13—H13120.8C21—C26—H26120.0
C12—C13—H13120.8
C2—N1—C1—O1−6.3 (3)C12—C13—C14—C150.6 (3)
C2—N1—C1—C11171.87 (14)F1—C14—C15—C16177.5 (2)
C1—N1—C2—N3179.61 (14)C13—C14—C15—C16−0.6 (4)
C1—N1—C2—S1−2.0 (2)C14—C15—C16—C11−0.4 (3)
C5—S1—C2—N1−176.30 (15)C12—C11—C16—C151.3 (3)
C5—S1—C2—N32.19 (11)C1—C11—C16—C15−176.43 (18)
N1—C2—N3—C4176.05 (13)C2—N3—C21—C22−97.29 (18)
S1—C2—N3—C4−2.61 (15)C4—N3—C21—C2282.51 (19)
N1—C2—N3—C21−4.1 (2)C2—N3—C21—C2680.0 (2)
S1—C2—N3—C21177.21 (10)C4—N3—C21—C26−100.2 (2)
C2—N3—C4—C51.65 (19)C26—C21—C22—F2178.95 (18)
C21—N3—C4—C5−178.16 (13)N3—C21—C22—F2−3.7 (2)
C2—N3—C4—C6−178.75 (14)C26—C21—C22—C23−0.8 (3)
C21—N3—C4—C61.4 (2)N3—C21—C22—C23176.59 (16)
N3—C4—C5—S10.14 (17)F2—C22—C23—C24−179.43 (18)
C6—C4—C5—S1−179.40 (14)C21—C22—C23—C240.3 (3)
C2—S1—C5—C4−1.36 (13)C22—C23—C24—C250.4 (3)
O1—C1—C11—C12−3.8 (3)C23—C24—C25—C26−0.5 (3)
N1—C1—C11—C12177.96 (16)C24—C25—C26—F2'−161.8 (4)
O1—C1—C11—C16173.91 (17)C24—C25—C26—C210.0 (3)
N1—C1—C11—C16−4.3 (2)C22—C21—C26—F2'165.4 (3)
C16—C11—C12—C13−1.3 (3)N3—C21—C26—F2'−12.0 (4)
C1—C11—C12—C13176.43 (16)C22—C21—C26—C250.6 (3)
C11—C12—C13—C140.4 (3)N3—C21—C26—C25−176.76 (18)
C12—C13—C14—F1−177.5 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1i0.952.413.322 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.952.413.322 (2)160

Symmetry code: (i) .

  9 in total

1.  Radioprotective effects of 2-iminothiazolidine derivatives against lethal doses of gamma radiation in mice.

Authors:  S J Hosseinimehr; A Shafiee; H Mozdarani; S Akhlagpour
Journal:  J Radiat Res       Date:  2001-12       Impact factor: 2.724

2.  Insect nicotinic acetylcholine receptor: conserved neonicotinoid specificity of [(3)H]imidacloprid binding site.

Authors:  A Zhang; H Kayser; P Maienfisch; J E Casida
Journal:  J Neurochem       Date:  2000-09       Impact factor: 5.372

3.  Imino-tetrahydro-benzothiazole derivatives as p53 inhibitors: discovery of a highly potent in vivo inhibitor and its action mechanism.

Authors:  Nicolas Pietrancosta; Anice Moumen; Rosanna Dono; Paul Lingor; Veronique Planchamp; Fabienne Lamballe; Mathias Bähr; Jean-Louis Kraus; Flavio Maina
Journal:  J Med Chem       Date:  2006-06-15       Impact factor: 7.446

4.  A new 2-imino-1,3-thiazoline derivative, KHG22394, inhibits melanin synthesis in mouse B16 melanoma cells.

Authors:  Dong-Seok Kim; Yun-Mi Jeong; Ik-Kyu Park; Hoh-Gyu Hahn; Hyun-Kyung Lee; Sun-Bang Kwon; Ji Hoon Jeong; Sung Jun Yang; Uy Dong Sohn; Kyoung-Chan Park
Journal:  Biol Pharm Bull       Date:  2007-01       Impact factor: 2.233

5.  Synthesis and antimicrobial activity of novel 2-thiazolylimino-5-arylidene-4-thiazolidinones.

Authors:  Paola Vicini; Athina Geronikaki; Kitka Anastasia; Matteo Incerti; Franca Zani
Journal:  Bioorg Med Chem       Date:  2006-02-20       Impact factor: 3.641

6.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

7.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

8.  (Z)-N-[3-(2-Methoxy-phen-yl)-4-phenyl-2,3-dihydro-thia-zol-2-yl-idene]-4-methyl-benzamide.

Authors:  Aamer Saeed; Sabah Zaman; Michael Bolte
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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