Literature DB >> 21582903

N-Benzyl-idenenordehydro-abietylamine.

Xiao-Ping Rao1, Yong Wu, Zhan-Qian Song, Shi-Bin Shang.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC n class="Chemical">NAME: (1R,4aS,10aR,E)-N-benzyl-idene-7-isopropyl-1,4a-dimethyl-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthren-1-amine], C(26)H(33)N, has been synthesized from nor-dehydro-abietylamine and benzaldehyde. The two cyclo-hexane rings form a trans ring junction with classic chair and half-chair conformations, respectively, the two methyl groups are on the same side of tricyclic hydro-phenanthrene structure. The dihedral angle between two benzene rings is 44.2 (4)°. The C=N bond is in an E configuration.

Entities:  

Year:  2009        PMID: 21582903      PMCID: PMC2969393          DOI: 10.1107/S1600536809022909

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of dehydro­abietiylamine derivatives, see: n class="Gene">Rao et al. (2006 ▶); Rao, Song & He (2008 ▶); Rao, Song, He & Jia (2008 ▶); Wilkerson et al. (1993 ▶).

Experimental

Crystal data

C26H33N M = 359.53 Monoclinic, a = 12.285 (3) Å b = 5.8940 (12) Å c = 14.994 (3) Å β = 95.90 (3)° V = 1079.9 (4) Å3 Z = 2 Mo Kα radiation μ = 0.06 mm−1 T = 293 K 0.40 × 0.30 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.975, T max = 0.981 2435 measured reflections 2324 independent reflections 1761 reflections with I > 2σ(I) R int = 0.044 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.199 S = 1.04 2324 reflections 244 parameters 2 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022909/at2811sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022909/at2811Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H33NF(000) = 392
Mr = 359.53Dx = 1.106 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 12.285 (3) Åθ = 10–13°
b = 5.8940 (12) ŵ = 0.06 mm1
c = 14.994 (3) ÅT = 293 K
β = 95.90 (3)°Block, white
V = 1079.9 (4) Å30.40 × 0.30 × 0.30 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer1761 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 26.0°, θmin = 1.4°
ω/2θ scansh = −15→15
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = 0→7
Tmin = 0.975, Tmax = 0.981l = 0→18
2435 measured reflections3 standard reflections every 200 reflections
2324 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.199H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.03P)2 + 2.5P] where P = (Fo2 + 2Fc2)/3
2324 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.30 e Å3
2 restraintsΔρmin = −0.36 e Å3
Experimental. Although the absolute configuration could not be determined in this case, it has been determined in our previous article which indicated the chiral centers exhibited R,S and R configurations, respectively.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.5943 (4)0.1064 (10)0.6722 (3)0.0555 (15)
C10.9610 (7)−0.212 (2)0.6297 (5)0.083 (3)
H1A1.0249−0.29590.62870.100*
C20.8832 (7)−0.2846 (18)0.6812 (5)0.080 (2)
H2A0.8933−0.41800.71420.096*
C30.7893 (7)−0.1591 (15)0.6841 (4)0.067 (2)
H3A0.7358−0.20590.71970.080*
C40.7749 (5)0.0366 (14)0.6340 (4)0.061 (2)
C50.8544 (7)0.1063 (16)0.5820 (5)0.072 (2)
H5A0.84540.23850.54820.087*
C60.9483 (7)−0.024 (2)0.5807 (6)0.091 (3)
H6A1.00270.02100.54550.109*
C70.6712 (5)0.1704 (15)0.6342 (4)0.065 (2)
H7A0.66560.30830.60400.078*
C80.4875 (7)0.2395 (12)0.6683 (4)0.0573 (19)
C90.4313 (5)0.1432 (11)0.7462 (3)0.0460 (15)
H9A0.4370−0.02180.74010.055*
C100.3056 (5)0.1900 (11)0.7458 (4)0.0436 (14)
C110.2496 (5)0.1195 (14)0.6530 (4)0.0552 (17)
H11A0.17320.16390.64860.066*
H11B0.2524−0.04430.64760.066*
C120.3039 (6)0.2281 (15)0.5748 (4)0.068 (2)
H12A0.26700.17660.51810.082*
H12B0.29700.39190.57740.082*
C130.4198 (5)0.1662 (15)0.5803 (4)0.0613 (19)
H13A0.45170.23470.53020.074*
H13B0.42540.00290.57430.074*
C140.4894 (5)0.1957 (14)0.8384 (4)0.0567 (17)
H14A0.56800.18400.83680.068*
H14B0.47260.34940.85560.068*
C150.4526 (5)0.0303 (16)0.9058 (4)0.061 (2)
H15A0.47190.09130.96540.073*
H15B0.4928−0.11020.90150.073*
C160.3317 (4)−0.0234 (11)0.8955 (3)0.0389 (13)
C170.2618 (5)0.0468 (10)0.8206 (3)0.0412 (14)
C180.2886 (5)−0.1458 (12)0.9632 (4)0.0501 (16)
H18A0.3349−0.18581.01370.060*
C190.1794 (5)−0.2108 (11)0.9587 (4)0.0452 (14)
C200.1139 (5)−0.1380 (13)0.8849 (4)0.0527 (17)
H20A0.0400−0.17550.88000.063*
C210.1526 (5)−0.0118 (13)0.8179 (4)0.0544 (17)
H21A0.10430.03520.76970.065*
C220.5043 (8)0.4935 (13)0.6724 (5)0.079 (3)
H22A0.43450.56800.66890.118*
H22B0.54280.54090.62310.118*
H22C0.54620.53280.72790.118*
C230.2709 (7)0.4386 (12)0.7645 (5)0.068 (2)
H23A0.19260.44680.76270.103*
H23B0.29520.53730.71960.103*
H23C0.30340.48480.82260.103*
C240.1371 (6)−0.3531 (14)1.0319 (4)0.0597 (19)
H24A0.0603−0.38651.01220.072*
C250.1949 (7)−0.5788 (13)1.0437 (6)0.080 (3)
H25A0.1657−0.66261.09080.120*
H25B0.2717−0.55411.05920.120*
H25C0.1839−0.66330.98880.120*
C260.1383 (7)−0.2230 (16)1.1198 (4)0.082 (3)
H26A0.1122−0.31941.16460.123*
H26B0.0919−0.09221.11110.123*
H26C0.2117−0.17551.13920.123*
U11U22U33U12U13U23
N0.066 (3)0.048 (3)0.056 (3)−0.002 (3)0.022 (3)−0.004 (3)
C10.070 (5)0.115 (9)0.063 (5)0.016 (6)0.002 (4)−0.023 (6)
C20.100 (6)0.076 (6)0.063 (4)−0.008 (6)0.004 (4)0.004 (5)
C30.087 (5)0.065 (5)0.048 (4)−0.012 (5)0.006 (4)−0.012 (4)
C40.067 (4)0.070 (5)0.044 (3)−0.018 (4)−0.001 (3)−0.007 (4)
C50.088 (5)0.068 (6)0.062 (4)−0.010 (5)0.011 (4)0.007 (4)
C60.075 (6)0.127 (10)0.069 (5)−0.022 (7)0.003 (4)0.000 (7)
C70.070 (4)0.073 (5)0.055 (4)−0.017 (4)0.020 (3)0.004 (4)
C80.095 (5)0.036 (4)0.041 (3)−0.001 (4)0.008 (3)−0.003 (3)
C90.076 (4)0.030 (3)0.031 (3)−0.013 (3)0.000 (3)−0.001 (3)
C100.061 (4)0.033 (3)0.036 (3)0.011 (3)0.002 (2)0.004 (3)
C110.062 (4)0.063 (5)0.040 (3)0.005 (4)0.002 (3)0.006 (3)
C120.096 (5)0.066 (5)0.040 (3)−0.002 (5)0.000 (3)0.013 (4)
C130.078 (4)0.073 (5)0.034 (3)−0.012 (5)0.012 (3)0.004 (4)
C140.067 (4)0.056 (4)0.044 (3)−0.014 (4)−0.005 (3)−0.001 (3)
C150.054 (4)0.091 (6)0.038 (3)−0.022 (4)0.000 (3)0.005 (4)
C160.044 (3)0.038 (3)0.035 (3)0.000 (3)0.005 (2)−0.003 (3)
C170.059 (4)0.035 (3)0.031 (3)0.001 (3)0.008 (2)−0.002 (3)
C180.060 (4)0.051 (4)0.037 (3)−0.003 (3)−0.006 (3)0.005 (3)
C190.057 (3)0.040 (4)0.041 (3)−0.002 (3)0.012 (3)−0.007 (3)
C200.046 (3)0.063 (5)0.048 (3)−0.004 (4)0.003 (3)−0.008 (4)
C210.063 (4)0.058 (5)0.041 (3)0.013 (4)−0.004 (3)−0.004 (3)
C220.134 (8)0.036 (4)0.069 (5)−0.022 (5)0.022 (5)0.004 (4)
C230.105 (6)0.037 (4)0.068 (4)0.019 (4)0.030 (4)0.001 (4)
C240.062 (4)0.067 (5)0.052 (3)−0.015 (4)0.015 (3)−0.006 (4)
C250.109 (6)0.038 (4)0.099 (6)−0.006 (5)0.031 (5)0.010 (4)
C260.135 (7)0.069 (6)0.045 (4)−0.015 (6)0.024 (4)0.005 (4)
N—C71.212 (7)C14—C151.508 (9)
N—C81.524 (9)C14—H14A0.9700
C1—C61.331 (14)C14—H14B0.9700
C1—C21.359 (11)C15—C161.510 (8)
C1—H1A0.9300C15—H15A0.9700
C2—C31.375 (11)C15—H15B0.9700
C2—H2A0.9300C16—C181.393 (8)
C3—C41.378 (11)C16—C171.405 (7)
C3—H3A0.9300C17—C211.381 (8)
C4—C51.374 (9)C18—C191.389 (8)
C4—C71.499 (7)C18—H18A0.9300
C5—C61.387 (12)C19—C201.368 (8)
C5—H5A0.9300C19—C241.515 (9)
C6—H6A0.9300C20—C211.374 (9)
C7—H7A0.9300C20—H20A0.9300
C8—C221.512 (10)C21—H21A0.9300
C8—C91.525 (9)C22—H22A0.9600
C8—C131.547 (9)C22—H22B0.9600
C9—C141.522 (7)C22—H22C0.9600
C9—C101.568 (8)C23—H23A0.9600
C9—H9A0.9800C23—H23B0.9600
C10—C171.544 (8)C23—H23C0.9600
C10—C111.545 (8)C24—C251.509 (11)
C10—C231.559 (9)C24—C261.524 (10)
C11—C121.546 (9)C24—H24A0.9800
C11—H11A0.9700C25—H25A0.9600
C11—H11B0.9700C25—H25B0.9600
C12—C131.464 (9)C25—H25C0.9600
C12—H12A0.9700C26—H26A0.9600
C12—H12B0.9700C26—H26B0.9600
C13—H13A0.9700C26—H26C0.9600
C13—H13B0.9700
C7—N—C8122.1 (7)C15—C14—H14A109.8
C6—C1—C2121.9 (10)C9—C14—H14A109.8
C6—C1—H1A119.1C15—C14—H14B109.8
C2—C1—H1A119.1C9—C14—H14B109.8
C1—C2—C3119.3 (10)H14A—C14—H14B108.2
C1—C2—H2A120.4C14—C15—C16115.3 (5)
C3—C2—H2A120.4C14—C15—H15A108.5
C2—C3—C4119.7 (8)C16—C15—H15A108.5
C2—C3—H3A120.2C14—C15—H15B108.5
C4—C3—H3A120.2C16—C15—H15B108.5
C5—C4—C3120.0 (7)H15A—C15—H15B107.5
C5—C4—C7119.9 (7)C18—C16—C17119.2 (5)
C3—C4—C7120.1 (7)C18—C16—C15118.5 (5)
C4—C5—C6119.0 (8)C17—C16—C15122.3 (5)
C4—C5—H5A120.5C21—C17—C16117.5 (5)
C6—C5—H5A120.5C21—C17—C10121.7 (5)
C1—C6—C5120.2 (9)C16—C17—C10120.8 (5)
C1—C6—H6A119.9C19—C18—C16123.0 (5)
C5—C6—H6A119.9C19—C18—H18A118.5
N—C7—C4122.8 (8)C16—C18—H18A118.5
N—C7—H7A118.6C20—C19—C18115.9 (6)
C4—C7—H7A118.6C20—C19—C24122.8 (6)
C22—C8—N113.3 (7)C18—C19—C24121.3 (6)
C22—C8—C9114.1 (6)C19—C20—C21122.8 (6)
N—C8—C9103.6 (5)C19—C20—H20A118.6
C22—C8—C13111.7 (7)C21—C20—H20A118.6
N—C8—C13105.9 (5)C20—C21—C17121.5 (6)
C9—C8—C13107.6 (6)C20—C21—H21A119.3
C14—C9—C8114.3 (5)C17—C21—H21A119.3
C14—C9—C10109.7 (5)C8—C22—H22A109.5
C8—C9—C10117.1 (5)C8—C22—H22B109.5
C14—C9—H9A104.8H22A—C22—H22B109.5
C8—C9—H9A104.8C8—C22—H22C109.5
C10—C9—H9A104.8H22A—C22—H22C109.5
C17—C10—C11110.6 (5)H22B—C22—H22C109.5
C17—C10—C23105.2 (5)C10—C23—H23A109.5
C11—C10—C23108.1 (6)C10—C23—H23B109.5
C17—C10—C9108.5 (5)H23A—C23—H23B109.5
C11—C10—C9107.6 (5)C10—C23—H23C109.5
C23—C10—C9116.9 (6)H23A—C23—H23C109.5
C10—C11—C12112.6 (6)H23B—C23—H23C109.5
C10—C11—H11A109.1C25—C24—C19112.4 (6)
C12—C11—H11A109.1C25—C24—C26112.2 (7)
C10—C11—H11B109.1C19—C24—C26112.0 (6)
C12—C11—H11B109.1C25—C24—H24A106.6
H11A—C11—H11B107.8C19—C24—H24A106.6
C13—C12—C11110.3 (6)C26—C24—H24A106.6
C13—C12—H12A109.6C24—C25—H25A109.5
C11—C12—H12A109.6C24—C25—H25B109.5
C13—C12—H12B109.6H25A—C25—H25B109.5
C11—C12—H12B109.6C24—C25—H25C109.5
H12A—C12—H12B108.1H25A—C25—H25C109.5
C12—C13—C8114.4 (6)H25B—C25—H25C109.5
C12—C13—H13A108.7C24—C26—H26A109.5
C8—C13—H13A108.7C24—C26—H26B109.5
C12—C13—H13B108.7H26A—C26—H26B109.5
C8—C13—H13B108.7C24—C26—H26C109.5
H13A—C13—H13B107.6H26A—C26—H26C109.5
C15—C14—C9109.4 (5)H26B—C26—H26C109.5
C6—C1—C2—C3−1.0 (13)C22—C8—C13—C12−71.4 (9)
C1—C2—C3—C40.9 (12)N—C8—C13—C12164.8 (7)
C2—C3—C4—C5−0.5 (10)C9—C8—C13—C1254.6 (9)
C2—C3—C4—C7177.9 (7)C8—C9—C14—C15−160.1 (6)
C3—C4—C5—C60.3 (11)C10—C9—C14—C1566.1 (7)
C7—C4—C5—C6−178.2 (7)C9—C14—C15—C16−41.1 (8)
C2—C1—C6—C50.8 (14)C14—C15—C16—C18−170.0 (6)
C4—C5—C6—C1−0.4 (13)C14—C15—C16—C179.6 (9)
C8—N—C7—C4−177.2 (6)C18—C16—C17—C21−0.4 (9)
C5—C4—C7—N173.2 (7)C15—C16—C17—C21179.9 (6)
C3—C4—C7—N−5.3 (11)C18—C16—C17—C10177.8 (6)
C7—N—C8—C22−38.6 (9)C15—C16—C17—C10−1.9 (9)
C7—N—C8—C9−162.7 (6)C11—C10—C17—C21−39.0 (8)
C7—N—C8—C1384.1 (8)C23—C10—C17—C2177.4 (8)
C22—C8—C9—C14−56.7 (9)C9—C10—C17—C21−156.8 (6)
N—C8—C9—C1466.8 (7)C11—C10—C17—C16142.8 (6)
C13—C8—C9—C14178.7 (6)C23—C10—C17—C16−100.8 (7)
C22—C8—C9—C1073.6 (9)C9—C10—C17—C1625.0 (7)
N—C8—C9—C10−162.9 (5)C17—C16—C18—C192.7 (10)
C13—C8—C9—C10−51.0 (7)C15—C16—C18—C19−177.6 (7)
C14—C9—C10—C17−56.7 (7)C16—C18—C19—C20−3.0 (10)
C8—C9—C10—C17170.8 (5)C16—C18—C19—C24177.1 (7)
C14—C9—C10—C11−176.4 (6)C18—C19—C20—C211.2 (10)
C8—C9—C10—C1151.2 (7)C24—C19—C20—C21−179.0 (7)
C14—C9—C10—C2361.9 (7)C19—C20—C21—C171.0 (11)
C8—C9—C10—C23−70.5 (7)C16—C17—C21—C20−1.3 (10)
C17—C10—C11—C12−170.3 (6)C10—C17—C21—C20−179.5 (6)
C23—C10—C11—C1275.1 (7)C20—C19—C24—C25120.6 (7)
C9—C10—C11—C12−51.9 (7)C18—C19—C24—C25−59.6 (9)
C10—C11—C12—C1358.1 (9)C20—C19—C24—C26−112.0 (8)
C11—C12—C13—C8−59.1 (9)C18—C19—C24—C2667.9 (8)
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