Literature DB >> 21582868

2,2',5,5'-Tetra-methyl-1,1'-(hexane-1,6-di-yl)di-1H-pyrrole.

Ana C Santos, Manuela Ramos Silva, Paula V Monsanto, Ana Matos Beja, Abilio J F N Sobral.   

Abstract

The mol-ecule of the title compound, C(18)H(28)N(2), composed of two 2,5-dimethyl-pyrrole groups linked by a hexane chain, lies across a crystallographic inversion centre. The mean plane of the pyrrole ring is almost perpendicular to the mean plane of the central chain, making a dihedral angle of 89.09 (8)°. The crystal structure is stabilized by inter-molecular C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21582868      PMCID: PMC2969330          DOI: 10.1107/S1600536809021965

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of chain spacers in conductive polymers, see: Zotti et al. (1997 ▶); Chane-Ching et al. (1998 ▶); Just et al. (1999 ▶). For related structures, see: Ramos Silva et al. (2002 ▶, 2005 ▶, 2008 ▶).

Experimental

Crystal data

C18H28N2 M = 272.42 Monoclinic, a = 7.7608 (3) Å b = 6.4767 (3) Å c = 16.7738 (7) Å β = 94.309 (3)° V = 840.74 (6) Å3 Z = 2 Mo Kα radiation μ = 0.06 mm−1 T = 293 K 0.35 × 0.10 × 0.06 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.881, T max = 0.997 12290 measured reflections 3799 independent reflections 2110 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.180 S = 1.03 3799 reflections 93 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809021965/su2118sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021965/su2118Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H28N2F(000) = 300
Mr = 272.42Dx = 1.076 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.7608 (3) ÅCell parameters from 2568 reflections
b = 6.4767 (3) Åθ = 2.6–30.6°
c = 16.7738 (7) ŵ = 0.06 mm1
β = 94.309 (3)°T = 293 K
V = 840.74 (6) Å3Needle, yellow
Z = 20.35 × 0.10 × 0.06 mm
Bruker SMART APEX CCD area-detector diffractometer3799 independent reflections
Radiation source: fine-focus sealed tube2110 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 35.4°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −12→12
Tmin = 0.881, Tmax = 0.997k = −10→10
12290 measured reflectionsl = −27→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.084P)2 + 0.0541P] where P = (Fo2 + 2Fc2)/3
3799 reflections(Δ/σ)max < 0.001
93 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.36575 (10)0.90724 (13)0.13870 (5)0.0405 (2)
C20.15288 (14)0.71268 (16)0.04807 (6)0.0461 (2)
H2A0.22780.72390.00450.055*
H2B0.07320.82830.04440.055*
C10.05154 (13)0.51178 (16)0.03991 (6)0.0438 (2)
H1A0.13150.39700.04710.053*
H1B−0.02690.50480.08220.053*
C70.32211 (13)1.07945 (16)0.18158 (6)0.0444 (2)
C30.26078 (15)0.72241 (17)0.12703 (6)0.0490 (3)
H3A0.18420.71330.17000.059*
H3B0.33630.60290.13100.059*
C40.53191 (13)0.92871 (18)0.11692 (6)0.0473 (3)
C60.46125 (16)1.20827 (17)0.18618 (7)0.0513 (3)
H60.46811.33600.21160.062*
C50.59257 (15)1.1140 (2)0.14579 (7)0.0547 (3)
H50.70171.16840.13980.066*
C80.15291 (18)1.1023 (3)0.21603 (10)0.0741 (4)
H8A0.14851.23320.24270.111*
H8B0.13860.99320.25370.111*
H8C0.06201.09520.17400.111*
C90.61868 (19)0.7690 (3)0.07002 (9)0.0770 (5)
H9A0.73390.81350.06150.116*
H9B0.55460.74960.01940.116*
H9C0.62350.64110.09900.116*
U11U22U33U12U13U23
N10.0412 (4)0.0383 (4)0.0410 (4)0.0004 (3)−0.0041 (3)−0.0022 (3)
C20.0477 (5)0.0449 (6)0.0443 (5)−0.0050 (4)−0.0057 (4)0.0003 (4)
C10.0452 (5)0.0434 (5)0.0420 (5)−0.0030 (4)−0.0018 (4)−0.0029 (4)
C70.0486 (5)0.0423 (5)0.0413 (5)0.0083 (4)−0.0031 (4)−0.0014 (4)
C30.0554 (6)0.0420 (5)0.0475 (6)−0.0075 (4)−0.0093 (4)0.0022 (4)
C40.0420 (5)0.0562 (6)0.0430 (5)0.0043 (4)−0.0008 (4)0.0002 (4)
C60.0670 (7)0.0383 (5)0.0463 (6)−0.0021 (5)−0.0113 (5)−0.0001 (4)
C50.0489 (6)0.0623 (7)0.0514 (6)−0.0127 (5)−0.0062 (4)0.0088 (5)
C80.0626 (8)0.0870 (11)0.0739 (9)0.0184 (7)0.0119 (6)−0.0092 (8)
C90.0652 (8)0.0941 (11)0.0722 (9)0.0247 (8)0.0077 (7)−0.0169 (8)
N1—C41.3735 (13)C3—H3B0.9700
N1—C71.3830 (13)C4—C51.3647 (17)
N1—C31.4529 (13)C4—C91.4904 (17)
C2—C31.5141 (14)C6—C51.4049 (18)
C2—C11.5212 (14)C6—H60.9300
C2—H2A0.9700C5—H50.9300
C2—H2B0.9700C8—H8A0.9600
C1—C1i1.5149 (18)C8—H8B0.9600
C1—H1A0.9700C8—H8C0.9600
C1—H1B0.9700C9—H9A0.9600
C7—C61.3622 (16)C9—H9B0.9600
C7—C81.4812 (17)C9—H9C0.9600
C3—H3A0.9700
C4—N1—C7109.16 (9)H3A—C3—H3B107.5
C4—N1—C3125.15 (9)C5—C4—N1107.48 (10)
C7—N1—C3125.29 (9)C5—C4—C9129.80 (12)
C3—C2—C1111.26 (8)N1—C4—C9122.72 (11)
C3—C2—H2A109.4C7—C6—C5107.90 (10)
C1—C2—H2A109.4C7—C6—H6126.1
C3—C2—H2B109.4C5—C6—H6126.1
C1—C2—H2B109.4C4—C5—C6108.05 (10)
H2A—C2—H2B108.0C4—C5—H5126.0
C1i—C1—C2113.63 (11)C6—C5—H5126.0
C1i—C1—H1A108.8C7—C8—H8A109.5
C2—C1—H1A108.8C7—C8—H8B109.5
C1i—C1—H1B108.8H8A—C8—H8B109.5
C2—C1—H1B108.8C7—C8—H8C109.5
H1A—C1—H1B107.7H8A—C8—H8C109.5
C6—C7—N1107.41 (10)H8B—C8—H8C109.5
C6—C7—C8129.72 (11)C4—C9—H9A109.5
N1—C7—C8122.84 (11)C4—C9—H9B109.5
N1—C3—C2114.82 (8)H9A—C9—H9B109.5
N1—C3—H3A108.6C4—C9—H9C109.5
C2—C3—H3A108.6H9A—C9—H9C109.5
N1—C3—H3B108.6H9B—C9—H9C109.5
C2—C3—H3B108.6
C3—C2—C1—C1i−176.89 (11)C3—N1—C4—C5−173.23 (9)
C4—N1—C7—C60.20 (11)C7—N1—C4—C9179.88 (11)
C3—N1—C7—C6173.26 (9)C3—N1—C4—C96.81 (16)
C4—N1—C7—C8−178.14 (11)N1—C7—C6—C5−0.16 (12)
C3—N1—C7—C8−5.08 (16)C8—C7—C6—C5178.02 (12)
C4—N1—C3—C2−89.88 (13)N1—C4—C5—C60.06 (12)
C7—N1—C3—C298.15 (12)C9—C4—C5—C6−179.98 (12)
C1—C2—C3—N1178.31 (9)C7—C6—C5—C40.06 (13)
C7—N1—C4—C5−0.16 (12)
D—H···AD—HH···AD···AD—H···A
C6—H6···Cg1ii0.932.673.4918 (13)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯Cg1i0.932.673.4918 (13)148

Symmetry code: (i) . Cg1 is the centroid of the pyrrole ring.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 4-dodecyl-3,5-dimethyl-1H-pyrrole-2-carboxylate: intermolecular interactions in an amphiphilic pyrrole.

Authors:  Manuela Ramos Silva; Ana Matos Beja; Jose Antonio Paixão; Abilio J F N Sobral; Susana H Lopes; A M d'A Rocha Gonsalves
Journal:  Acta Crystallogr C       Date:  2002-08-31       Impact factor: 1.172

  2 in total

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