Literature DB >> 21582860

N-[(2S)-4-Chloro-2-(l-menth-yloxy)-5-oxo-2,5-dihydro-furan-3-yl]-l-valine.

Xiu-Mei Song1, Zhao-Yang Li, Zhao-Yang Wang, Jian-Xiao Li.   

Abstract

The title compound, C(19)H(30)ClNO(5), was obtained by the tandem asymmetric Michael addition-elimination reaction of (5S)-3,4-dichloro-5-(l-menth-yloxy)furan-2(5H)-one and l-valine in the presence of potassium hydroxide. The furan-one unit is approximately planar (r.m.s. deviation = 0.0204 Å) and the six-membered cyclo-hexane ring adopts a chair conformation. The crystal structure is stabilized by a network of O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582860      PMCID: PMC2969247          DOI: 10.1107/S1600536809022120

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biologically active 4-amino-2(5H)-furan­ones, see: Kimura et al. (2000 ▶); Tanoury et al., 2008 ▶). For the synthesis of the precursor, (5S)-3,4-dichloro-5-(l-menth­yloxy)furan-2(5H)-one, see: Chen & Geng (1993 ▶).

Experimental

Crystal data

C19H30ClNO5 M = 387.89 Tetragonal, a = 10.4540 (4) Å c = 39.300 (3) Å V = 4294.9 (4) Å3 Z = 8 Mo Kα radiation μ = 0.20 mm−1 T = 293 K 0.30 × 0.23 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.769, T max = 0.867 (expected range = 0.860–0.970) 22031 measured reflections 3796 independent reflections 2868 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.091 S = 1.04 3796 reflections 242 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack, (1983 ▶), 1499 Friedel pairs Flack parameter: −0.03 (8) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022120/gk2204sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022120/gk2204Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H30ClNO5Dx = 1.200 Mg m3
Mr = 387.89Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P43212Cell parameters from 3405 reflections
Hall symbol: P 4nw 2abwθ = 2.2–19.1°
a = 10.4540 (4) ŵ = 0.20 mm1
c = 39.300 (3) ÅT = 293 K
V = 4294.9 (4) Å3Block, colourless
Z = 80.30 × 0.23 × 0.15 mm
F(000) = 1664.0
Bruker APEXII CCD area-detector diffractometer3796 independent reflections
Radiation source: fine-focus sealed tube2868 reflections with I > 2σ(I)
graphiteRint = 0.053
Detector resolution: 0 pixels mm-1θmax = 25.0°, θmin = 2.0°
φ and ω scansh = −12→10
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −11→12
Tmin = 0.769, Tmax = 0.867l = −46→46
22031 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.040w = 1/[σ2(Fo2) + (0.0329P)2 + 0.7758P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.091(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.18 e Å3
3796 reflectionsΔρmin = −0.23 e Å3
242 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc^*^=kFc[1+0.001xFc^2^λ^3^/sin(2θ)]^-1/4^
0 restraintsExtinction coefficient: 0.0020 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack, (1983), 1499 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.03 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6886 (3)−0.0142 (2)−0.02302 (5)0.0457 (6)
C20.6349 (2)0.0184 (2)0.01161 (5)0.0434 (6)
H20.5486−0.01780.01320.052*
C30.6252 (3)0.1638 (3)0.01705 (6)0.0645 (8)
H30.61690.17710.04160.077*
C40.5046 (4)0.2198 (3)0.00080 (9)0.1066 (14)
H4A0.49290.30610.00850.160*
H4B0.43180.16920.00720.160*
H4C0.51350.2191−0.02350.160*
C50.7443 (4)0.2337 (3)0.00618 (8)0.0901 (11)
H5A0.81800.19260.01580.135*
H5B0.74030.32070.01400.135*
H5C0.75070.2325−0.01820.135*
C60.6726 (2)−0.0701 (2)0.06900 (5)0.0420 (6)
C70.5557 (2)−0.0781 (2)0.08334 (5)0.0478 (6)
C80.5677 (3)−0.1196 (2)0.11793 (5)0.0489 (6)
C90.7698 (2)−0.0992 (2)0.09642 (5)0.0429 (6)
H90.8263−0.16950.08960.052*
C100.9662 (2)−0.0054 (2)0.11656 (5)0.0445 (6)
H101.0136−0.06630.10240.053*
C110.9624 (2)−0.0546 (3)0.15302 (5)0.0529 (7)
H11A0.9221−0.13810.15340.063*
H11B0.91120.00290.16680.063*
C121.0967 (3)−0.0645 (3)0.16813 (6)0.0596 (7)
H121.1447−0.12780.15490.072*
C131.0913 (3)−0.1106 (3)0.20518 (6)0.0868 (10)
H13A1.0524−0.04580.21910.130*
H13B1.1764−0.12710.21320.130*
H13C1.0416−0.18770.20650.130*
C141.1649 (3)0.0631 (3)0.16501 (7)0.0753 (9)
H14A1.12330.12500.17970.090*
H14B1.25250.05340.17270.090*
C151.1654 (3)0.1133 (3)0.12899 (7)0.0723 (9)
H15A1.21510.05620.11470.087*
H15B1.20620.19660.12860.087*
C161.0302 (2)0.1249 (2)0.11446 (6)0.0522 (7)
H160.98280.18140.12990.063*
C171.0229 (3)0.1862 (3)0.07910 (7)0.0698 (8)
H170.93270.18460.07230.084*
C181.0627 (4)0.3269 (3)0.08046 (11)0.1295 (16)
H18A1.02130.36780.09930.194*
H18B1.03800.36850.05970.194*
H18C1.15380.33250.08320.194*
C191.0969 (4)0.1145 (4)0.05192 (7)0.1001 (12)
H19A1.18660.11770.05710.150*
H19B1.08180.15340.03020.150*
H19C1.06920.02700.05140.150*
Cl10.40649 (7)−0.05720 (10)0.066293 (16)0.0818 (3)
N10.71379 (18)−0.0411 (2)0.03775 (4)0.0463 (5)
H10.7919−0.05860.03270.056*
O10.60255 (18)0.0096 (2)−0.04637 (4)0.0835 (7)
H1A0.6322−0.0068−0.06520.125*
O20.79397 (18)−0.05167 (19)−0.02856 (4)0.0633 (5)
O30.48370 (18)−0.14530 (18)0.13838 (4)0.0625 (5)
O40.69263 (17)−0.13404 (16)0.12582 (3)0.0515 (5)
O50.83805 (15)0.01070 (15)0.10286 (4)0.0472 (4)
U11U22U33U12U13U23
C10.0580 (17)0.0518 (16)0.0274 (11)0.0057 (12)−0.0053 (11)0.0020 (11)
C20.0501 (15)0.0544 (16)0.0259 (10)0.0075 (12)−0.0023 (10)0.0030 (10)
C30.095 (2)0.0608 (18)0.0382 (13)0.0207 (17)0.0001 (14)−0.0027 (13)
C40.135 (4)0.086 (3)0.099 (2)0.056 (2)−0.020 (2)0.002 (2)
C50.132 (3)0.067 (2)0.072 (2)−0.014 (2)0.006 (2)0.0021 (17)
C60.0515 (15)0.0469 (15)0.0276 (11)0.0046 (11)−0.0012 (11)−0.0033 (10)
C70.0480 (15)0.0655 (17)0.0301 (11)0.0041 (13)0.0008 (11)0.0020 (11)
C80.0632 (19)0.0531 (16)0.0303 (11)−0.0084 (13)0.0000 (12)−0.0034 (11)
C90.0542 (15)0.0481 (15)0.0265 (11)−0.0019 (12)−0.0016 (10)0.0020 (11)
C100.0485 (15)0.0488 (15)0.0361 (12)0.0063 (12)−0.0051 (11)−0.0040 (11)
C110.0620 (17)0.0601 (17)0.0365 (12)0.0011 (14)−0.0035 (12)−0.0009 (12)
C120.0670 (18)0.070 (2)0.0418 (13)0.0108 (15)−0.0119 (13)−0.0125 (13)
C130.106 (3)0.108 (3)0.0464 (16)0.017 (2)−0.0248 (17)−0.0055 (17)
C140.070 (2)0.092 (3)0.0641 (18)−0.0008 (18)−0.0196 (15)−0.0204 (17)
C150.064 (2)0.073 (2)0.079 (2)−0.0123 (17)−0.0053 (16)−0.0122 (17)
C160.0554 (17)0.0466 (16)0.0545 (15)0.0019 (12)0.0008 (13)−0.0082 (12)
C170.074 (2)0.0622 (19)0.0737 (19)−0.0058 (16)0.0041 (16)0.0165 (15)
C180.153 (4)0.071 (3)0.164 (4)−0.030 (3)0.003 (3)0.035 (3)
C190.119 (3)0.123 (3)0.0585 (18)0.011 (3)0.014 (2)0.019 (2)
Cl10.0488 (4)0.1483 (8)0.0483 (4)0.0136 (5)0.0026 (3)0.0132 (4)
N10.0460 (12)0.0683 (14)0.0247 (9)0.0099 (10)0.0023 (8)0.0061 (9)
O10.0698 (13)0.151 (2)0.0296 (8)0.0369 (14)−0.0086 (9)−0.0045 (11)
O20.0639 (13)0.0890 (15)0.0369 (9)0.0293 (11)0.0062 (8)0.0049 (9)
O30.0717 (13)0.0841 (14)0.0317 (8)−0.0182 (10)0.0114 (9)0.0017 (8)
O40.0601 (12)0.0674 (12)0.0270 (8)−0.0094 (9)−0.0030 (8)0.0084 (7)
O50.0530 (11)0.0463 (11)0.0422 (9)0.0000 (8)−0.0070 (8)0.0009 (8)
C1—O21.189 (3)C11—C121.528 (3)
C1—O11.309 (3)C11—H11A0.9700
C1—C21.511 (3)C11—H11B0.9700
C2—N11.456 (3)C12—C141.517 (4)
C2—C31.538 (3)C12—C131.534 (3)
C2—H20.9800C12—H120.9800
C3—C51.506 (4)C13—H13A0.9600
C3—C41.530 (4)C13—H13B0.9600
C3—H30.9800C13—H13C0.9600
C4—H4A0.9600C14—C151.510 (4)
C4—H4B0.9600C14—H14A0.9700
C4—H4C0.9600C14—H14B0.9700
C5—H5A0.9600C15—C161.529 (4)
C5—H5B0.9600C15—H15A0.9700
C5—H5C0.9600C15—H15B0.9700
C6—N11.336 (3)C16—C171.532 (3)
C6—C71.348 (3)C16—H160.9800
C6—C91.511 (3)C17—C191.518 (4)
C7—C81.432 (3)C17—C181.529 (4)
C7—Cl11.712 (2)C17—H170.9800
C8—O31.220 (3)C18—H18A0.9600
C8—O41.351 (3)C18—H18B0.9600
C9—O51.376 (3)C18—H18C0.9600
C9—O41.455 (3)C19—H19A0.9600
C9—H90.9800C19—H19B0.9600
C10—O51.454 (3)C19—H19C0.9600
C10—C161.520 (3)N1—H10.8600
C10—C111.523 (3)O1—H1A0.8200
C10—H100.9800
O2—C1—O1124.8 (2)C14—C12—C11109.9 (2)
O2—C1—C2125.7 (2)C14—C12—C13111.7 (2)
O1—C1—C2109.5 (2)C11—C12—C13110.9 (2)
N1—C2—C1109.21 (18)C14—C12—H12108.1
N1—C2—C3111.14 (19)C11—C12—H12108.1
C1—C2—C3111.9 (2)C13—C12—H12108.1
N1—C2—H2108.2C12—C13—H13A109.5
C1—C2—H2108.2C12—C13—H13B109.5
C3—C2—H2108.2H13A—C13—H13B109.5
C5—C3—C4112.2 (3)C12—C13—H13C109.5
C5—C3—C2112.7 (2)H13A—C13—H13C109.5
C4—C3—C2112.0 (2)H13B—C13—H13C109.5
C5—C3—H3106.5C15—C14—C12112.5 (2)
C4—C3—H3106.5C15—C14—H14A109.1
C2—C3—H3106.5C12—C14—H14A109.1
C3—C4—H4A109.5C15—C14—H14B109.1
C3—C4—H4B109.5C12—C14—H14B109.1
H4A—C4—H4B109.5H14A—C14—H14B107.8
C3—C4—H4C109.5C14—C15—C16112.0 (2)
H4A—C4—H4C109.5C14—C15—H15A109.2
H4B—C4—H4C109.5C16—C15—H15A109.2
C3—C5—H5A109.5C14—C15—H15B109.2
C3—C5—H5B109.5C16—C15—H15B109.2
H5A—C5—H5B109.5H15A—C15—H15B107.9
C3—C5—H5C109.5C10—C16—C15108.4 (2)
H5A—C5—H5C109.5C10—C16—C17113.7 (2)
H5B—C5—H5C109.5C15—C16—C17114.7 (2)
N1—C6—C7133.7 (2)C10—C16—H16106.5
N1—C6—C9119.0 (2)C15—C16—H16106.5
C7—C6—C9107.34 (18)C17—C16—H16106.5
C6—C7—C8109.7 (2)C19—C17—C18111.2 (3)
C6—C7—Cl1130.86 (17)C19—C17—C16114.0 (2)
C8—C7—Cl1119.30 (18)C18—C17—C16110.9 (3)
O3—C8—O4121.3 (2)C19—C17—H17106.8
O3—C8—C7129.0 (2)C18—C17—H17106.8
O4—C8—C7109.6 (2)C16—C17—H17106.8
O5—C9—O4110.51 (17)C17—C18—H18A109.5
O5—C9—C6108.15 (19)C17—C18—H18B109.5
O4—C9—C6104.14 (18)H18A—C18—H18B109.5
O5—C9—H9111.3C17—C18—H18C109.5
O4—C9—H9111.3H18A—C18—H18C109.5
C6—C9—H9111.3H18B—C18—H18C109.5
O5—C10—C16106.35 (18)C17—C19—H19A109.5
O5—C10—C11111.29 (19)C17—C19—H19B109.5
C16—C10—C11111.45 (19)H19A—C19—H19B109.5
O5—C10—H10109.2C17—C19—H19C109.5
C16—C10—H10109.2H19A—C19—H19C109.5
C11—C10—H10109.2H19B—C19—H19C109.5
C10—C11—C12111.4 (2)C6—N1—C2124.25 (19)
C10—C11—H11A109.4C6—N1—H1117.9
C12—C11—H11A109.4C2—N1—H1117.9
C10—C11—H11B109.4C1—O1—H1A109.5
C12—C11—H11B109.4C8—O4—C9109.00 (16)
H11A—C11—H11B108.0C9—O5—C10116.73 (18)
O2—C1—C2—N1−18.5 (4)C13—C12—C14—C15−177.1 (3)
O1—C1—C2—N1163.8 (2)C12—C14—C15—C1656.1 (3)
O2—C1—C2—C3105.0 (3)O5—C10—C16—C15179.41 (19)
O1—C1—C2—C3−72.8 (3)C11—C10—C16—C1558.0 (3)
N1—C2—C3—C576.6 (3)O5—C10—C16—C17−51.8 (3)
C1—C2—C3—C5−45.8 (3)C11—C10—C16—C17−173.2 (2)
N1—C2—C3—C4−155.9 (2)C14—C15—C16—C10−56.8 (3)
C1—C2—C3—C481.8 (3)C14—C15—C16—C17175.0 (2)
N1—C6—C7—C8177.3 (3)C10—C16—C17—C19−65.7 (3)
C9—C6—C7—C8−4.1 (3)C15—C16—C17—C1959.8 (3)
N1—C6—C7—Cl11.9 (4)C10—C16—C17—C18167.9 (3)
C9—C6—C7—Cl1−179.5 (2)C15—C16—C17—C18−66.5 (4)
C6—C7—C8—O3−175.2 (3)C7—C6—N1—C214.1 (4)
Cl1—C7—C8—O30.9 (4)C9—C6—N1—C2−164.4 (2)
C6—C7—C8—O41.9 (3)C1—C2—N1—C6−155.7 (2)
Cl1—C7—C8—O4177.94 (17)C3—C2—N1—C680.5 (3)
N1—C6—C9—O566.0 (3)O3—C8—O4—C9178.6 (2)
C7—C6—C9—O5−112.9 (2)C7—C8—O4—C91.3 (3)
N1—C6—C9—O4−176.5 (2)O5—C9—O4—C8112.3 (2)
C7—C6—C9—O44.7 (3)C6—C9—O4—C8−3.6 (2)
O5—C10—C11—C12−176.8 (2)O4—C9—O5—C1092.0 (2)
C16—C10—C11—C12−58.3 (3)C6—C9—O5—C10−154.55 (17)
C10—C11—C12—C1454.4 (3)C16—C10—O5—C9168.55 (17)
C10—C11—C12—C13178.4 (2)C11—C10—O5—C9−69.9 (2)
C11—C12—C14—C15−53.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.253.019 (3)148
O1—H1A···O3ii0.821.832.617 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.862.253.019 (3)148
O1—H1A⋯O3ii0.821.832.617 (2)160

Symmetry codes: (i) ; (ii) .

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