Literature DB >> 21582833

1,2,5-Oxadiazolo[3,4-b]glycyrrhetinic acid.

Jun Hu1, Libing Yu, Ruji Wang, Yong Ju.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: 11-oxo-2,3-(oxy-dinitrilo)olean-12-en-29-oic acid], C(30)H(42)N(2)O(4), contains a linear array of five six-membered rings and a five-membered heterocyclic ring. The C ring, containing an α,β-unsaturated ketone, has a slightly distorted half-chair conformation, as does the A ring, with N-C-C angles 125.3 (5), 111.2 (4), 124.9 (5) and 109.2 (5)°, while the other three six-membered rings adopt chair conformations. The enanti-omer has been assigned by reference to unchanging chiral centres in the synthetic procedure. An intramolecular C-H⋯O interaction is present. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules.

Entities:  

Year:  2009        PMID: 21582833      PMCID: PMC2969501          DOI: 10.1107/S1600536809020996

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Glycyrrhetinic acid is the aglycone of glycyrrhizin, a triterpenoid saponin found in the roots of liquorice, see: Yoshida et al. (2001 ▶). For the pharmacological activities of glycyrrhetinic acid and its derivatives, see: Finney & Tarknoy (1960 ▶); Yu et al. (2006 ▶); Su et al. (2004 ▶).

Experimental

Crystal data

C30H42N2O4 M = 494.66 Orthorhombic, a = 8.5489 (11) Å b = 10.9019 (18) Å c = 28.898 (3) Å V = 2693.2 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.5 × 0.4 × 0.3 mm

Data collection

Bruker P4 diffractometer Absorption correction: none 3717 measured reflections 2855 independent reflections 2178 reflections with I > 2σ(I) R int = 0.031 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.109 S = 1.02 2855 reflections 326 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: XSCANS (Bruker, 1997 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809020996/at2805sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020996/at2805Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C30H42N2O4F(000) = 1072
Mr = 494.66Dx = 1.220 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 52 reflections
a = 8.5489 (11) Åθ = 3.7–19.0°
b = 10.9019 (18) ŵ = 0.08 mm1
c = 28.898 (3) ÅT = 295 K
V = 2693.2 (6) Å3Prism, colorless
Z = 40.5 × 0.4 × 0.3 mm
Bruker P4 diffractometerRint = 0.031
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 2.0°
graphiteh = −1→10
ω scansk = −13→1
3717 measured reflectionsl = −1→35
2855 independent reflections3 standard reflections every 97 reflections
2178 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.001P)2 + 1.3P] where P = (Fo2 + 2Fc2)/3
2855 reflections(Δ/σ)max < 0.001
326 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. absolute configuration has not been established by anomalous dispersion effects in diffraction measurements on the crystal. The enantiomer has been assigned by reference to unchanging chiral centres in the synthetic procedure.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6409 (6)−0.3844 (3)0.25922 (12)0.0902 (11)
O20.4151 (4)−0.0311 (2)0.41200 (9)0.0636 (9)
O30.0227 (4)0.4128 (3)0.47645 (11)0.0733 (9)
O40.0196 (5)0.6051 (3)0.50103 (11)0.0802 (10)
H4A−0.03800.57580.52080.096*
N10.5282 (6)−0.3188 (3)0.28470 (14)0.0767 (12)
N20.7751 (6)−0.3138 (4)0.25298 (14)0.0826 (14)
C10.5253 (6)−0.1096 (4)0.31919 (14)0.0592 (12)
H1A0.4552−0.14150.34270.071*
H1B0.4653−0.05740.29860.071*
C20.5954 (6)−0.2133 (4)0.29242 (14)0.0587 (12)
C30.7457 (6)−0.2096 (4)0.27309 (14)0.0621 (13)
C40.8579 (6)−0.1039 (4)0.27610 (14)0.0586 (12)
C50.7758 (5)0.0033 (4)0.30352 (13)0.0535 (11)
H5A0.71430.04850.28050.064*
C60.8964 (5)0.0951 (4)0.32221 (14)0.0585 (11)
H6A0.95020.05940.34850.070*
H6B0.97340.11230.29850.070*
C70.8171 (5)0.2144 (4)0.33693 (14)0.0573 (11)
H7A0.77170.25300.30980.069*
H7B0.89590.26960.34920.069*
C80.6882 (5)0.1969 (4)0.37362 (13)0.0462 (10)
C90.5807 (5)0.0872 (3)0.36035 (13)0.0466 (10)
H9A0.51940.11730.33400.056*
C100.6578 (5)−0.0339 (3)0.34242 (13)0.0483 (10)
C110.4616 (5)0.0705 (4)0.39885 (14)0.0526 (11)
C120.3977 (6)0.1813 (4)0.41969 (14)0.0535 (11)
H12A0.31300.17260.43960.064*
C130.4519 (5)0.2939 (3)0.41227 (13)0.0450 (10)
C140.5843 (5)0.3161 (3)0.37735 (13)0.0463 (10)
C150.6873 (5)0.4283 (4)0.39076 (15)0.0553 (11)
H15A0.76810.40110.41190.066*
H15B0.73860.45870.36310.066*
C160.5968 (5)0.5356 (3)0.41356 (14)0.0576 (11)
H16A0.67120.59680.42400.069*
H16B0.53020.57370.39050.069*
C170.4960 (5)0.4953 (4)0.45462 (14)0.0521 (10)
C180.3760 (5)0.4008 (3)0.43689 (13)0.0487 (10)
H18A0.32510.36660.46440.058*
C190.2459 (5)0.4588 (4)0.40792 (14)0.0541 (11)
H19A0.29020.48720.37890.065*
H19B0.16900.39630.40070.065*
C200.1633 (5)0.5660 (4)0.43147 (15)0.0554 (11)
C210.2844 (6)0.6604 (4)0.44773 (17)0.0653 (13)
H21A0.33160.69900.42090.078*
H21B0.23190.72370.46550.078*
C220.4116 (6)0.6038 (4)0.47708 (16)0.0644 (12)
H22A0.36590.57660.50600.077*
H22B0.48820.66660.48430.077*
C231.0152 (6)−0.1466 (5)0.29607 (17)0.0815 (16)
H23A0.9998−0.17690.32690.122*
H23B1.0868−0.07880.29670.122*
H23C1.0573−0.21070.27700.122*
C240.8894 (7)−0.0563 (4)0.22619 (13)0.0768 (15)
H24A0.7932−0.02820.21280.115*
H24B0.9316−0.12160.20770.115*
H24C0.96290.01020.22730.115*
C250.7345 (5)−0.1141 (4)0.38010 (14)0.0589 (12)
H25A0.7778−0.18650.36620.088*
H25B0.6572−0.13730.40260.088*
H25C0.8162−0.06850.39500.088*
C260.7706 (5)0.1700 (4)0.42047 (13)0.0566 (11)
H26A0.83430.09800.41750.085*
H26B0.69320.15700.44400.085*
H26C0.83510.23860.42880.085*
C270.5036 (6)0.3478 (4)0.33047 (13)0.0582 (12)
H27A0.44050.41990.33420.087*
H27B0.43870.28040.32100.087*
H27C0.58200.36250.30730.087*
C280.5997 (6)0.4369 (4)0.49226 (14)0.0668 (12)
H28A0.53560.41170.51780.100*
H28B0.67530.49580.50270.100*
H28C0.65280.36680.47970.100*
C290.0481 (6)0.6278 (5)0.39767 (16)0.0791 (15)
H29A−0.02750.56870.38730.119*
H29B0.10450.65920.37150.119*
H29C−0.00460.69400.41310.119*
C300.0645 (5)0.5169 (4)0.47178 (15)0.0557 (11)
U11U22U33U12U13U23
O10.123 (3)0.0579 (19)0.090 (2)0.001 (3)0.019 (3)−0.0219 (19)
O20.081 (2)0.0426 (15)0.0673 (18)−0.0104 (17)0.0202 (19)0.0001 (14)
O30.084 (2)0.0523 (18)0.084 (2)−0.007 (2)0.012 (2)−0.0047 (16)
O40.109 (3)0.0517 (17)0.080 (2)0.006 (2)0.023 (2)−0.0056 (17)
N10.102 (3)0.053 (2)0.075 (2)0.001 (3)0.008 (3)−0.011 (2)
N20.107 (4)0.061 (3)0.079 (3)0.012 (3)0.020 (3)−0.013 (2)
C10.069 (3)0.048 (2)0.061 (2)0.002 (3)0.000 (3)−0.003 (2)
C20.082 (3)0.044 (2)0.050 (2)0.001 (3)−0.003 (3)−0.003 (2)
C30.086 (4)0.053 (3)0.047 (2)0.009 (3)0.005 (3)−0.002 (2)
C40.066 (3)0.058 (3)0.052 (2)0.010 (3)0.006 (2)−0.002 (2)
C50.059 (3)0.053 (2)0.048 (2)0.006 (2)0.004 (2)0.0004 (19)
C60.054 (3)0.062 (3)0.059 (2)−0.004 (3)0.009 (2)0.002 (2)
C70.058 (3)0.054 (2)0.060 (3)−0.007 (2)0.012 (2)0.000 (2)
C80.048 (2)0.043 (2)0.047 (2)−0.003 (2)0.003 (2)0.0021 (18)
C90.052 (2)0.041 (2)0.048 (2)−0.003 (2)0.000 (2)0.0028 (17)
C100.053 (2)0.042 (2)0.049 (2)0.006 (2)0.003 (2)0.0019 (19)
C110.057 (3)0.044 (2)0.056 (2)−0.005 (2)0.006 (2)−0.0002 (19)
C120.059 (3)0.045 (2)0.057 (2)−0.008 (2)0.013 (2)0.000 (2)
C130.045 (2)0.045 (2)0.045 (2)−0.002 (2)0.000 (2)0.0007 (18)
C140.051 (2)0.040 (2)0.048 (2)−0.003 (2)−0.003 (2)−0.0002 (18)
C150.055 (3)0.049 (2)0.062 (3)−0.013 (2)0.002 (2)0.002 (2)
C160.060 (3)0.043 (2)0.070 (3)−0.009 (2)−0.004 (3)−0.001 (2)
C170.050 (2)0.048 (2)0.058 (2)−0.007 (2)−0.001 (2)−0.007 (2)
C180.051 (2)0.043 (2)0.053 (2)0.002 (2)−0.003 (2)−0.0029 (18)
C190.054 (3)0.051 (2)0.058 (2)0.002 (2)−0.004 (2)0.001 (2)
C200.054 (3)0.048 (2)0.064 (3)0.007 (2)−0.004 (2)0.002 (2)
C210.065 (3)0.047 (2)0.084 (3)−0.001 (2)0.003 (3)−0.003 (2)
C220.061 (3)0.050 (2)0.082 (3)−0.002 (3)−0.007 (3)−0.016 (2)
C230.079 (4)0.083 (4)0.082 (3)0.025 (3)0.007 (3)−0.004 (3)
C240.098 (4)0.080 (3)0.052 (2)0.002 (4)0.017 (3)−0.008 (2)
C250.075 (3)0.052 (2)0.050 (2)0.008 (3)0.000 (2)0.005 (2)
C260.061 (3)0.058 (3)0.051 (2)0.005 (2)−0.005 (2)0.003 (2)
C270.071 (3)0.053 (2)0.051 (2)0.001 (3)−0.003 (2)0.0071 (19)
C280.066 (3)0.075 (3)0.059 (3)0.005 (3)−0.009 (3)−0.009 (2)
C290.078 (4)0.078 (3)0.082 (3)0.016 (3)−0.001 (3)0.024 (3)
C300.053 (3)0.048 (2)0.066 (3)0.008 (2)−0.012 (2)−0.001 (2)
O1—N21.393 (5)C15—H15B0.9700
O1—N11.408 (5)C16—C171.531 (5)
O2—C111.237 (4)C16—H16A0.9700
O3—C301.197 (5)C16—H16B0.9700
O4—C301.336 (5)C17—C221.530 (5)
O4—H4A0.8200C17—C181.541 (5)
N1—C21.304 (5)C17—C281.541 (5)
N2—C31.301 (5)C18—C191.528 (5)
C1—C21.495 (6)C18—H18A0.9800
C1—C101.554 (6)C19—C201.526 (5)
C1—H1A0.9700C19—H19A0.9700
C1—H1B0.9700C19—H19B0.9700
C2—C31.401 (7)C20—C211.534 (6)
C3—C41.501 (6)C20—C301.535 (6)
C4—C231.535 (6)C20—C291.542 (6)
C4—C241.556 (5)C21—C221.511 (6)
C4—C51.578 (6)C21—H21A0.9700
C5—C61.534 (6)C21—H21B0.9700
C5—C101.564 (6)C22—H22A0.9700
C5—H5A0.9800C22—H22B0.9700
C6—C71.527 (6)C23—H23A0.9600
C6—H6A0.9700C23—H23B0.9600
C6—H6B0.9700C23—H23C0.9600
C7—C81.541 (5)C24—H24A0.9600
C7—H7A0.9700C24—H24B0.9600
C7—H7B0.9700C24—H24C0.9600
C8—C91.556 (5)C25—H25A0.9600
C8—C261.554 (5)C25—H25B0.9600
C8—C141.578 (5)C25—H25C0.9600
C9—C111.519 (5)C26—H26A0.9600
C9—C101.565 (5)C26—H26B0.9600
C9—H9A0.9800C26—H26C0.9600
C10—C251.543 (5)C27—H27A0.9600
C11—C121.456 (5)C27—H27B0.9600
C12—C131.330 (5)C27—H27C0.9600
C12—H12A0.9300C28—H28A0.9600
C13—C181.512 (5)C28—H28B0.9600
C13—C141.536 (5)C28—H28C0.9600
C14—C151.556 (5)C29—H29A0.9600
C14—C271.559 (5)C29—H29B0.9600
C15—C161.549 (5)C29—H29C0.9600
C15—H15A0.9700
N2—O1—N1110.5 (3)C15—C16—H16B108.9
C30—O4—H4A109.5H16A—C16—H16B107.8
C2—N1—O1103.6 (4)C22—C17—C16111.8 (3)
C3—N2—O1105.4 (4)C22—C17—C18110.1 (3)
C2—C1—C10109.4 (4)C16—C17—C18108.0 (3)
C2—C1—H1A109.8C22—C17—C28106.9 (3)
C10—C1—H1A109.8C16—C17—C28110.0 (4)
C2—C1—H1B109.8C18—C17—C28110.0 (3)
C10—C1—H1B109.8C13—C18—C19111.9 (3)
H1A—C1—H1B108.2C13—C18—C17112.7 (3)
N1—C2—C3111.2 (4)C19—C18—C17113.0 (3)
N1—C2—C1125.3 (5)C13—C18—H18A106.2
C3—C2—C1123.5 (4)C19—C18—H18A106.2
N2—C3—C2109.2 (5)C17—C18—H18A106.2
N2—C3—C4124.9 (5)C20—C19—C18114.2 (3)
C2—C3—C4125.8 (4)C20—C19—H19A108.7
C3—C4—C23110.4 (4)C18—C19—H19A108.7
C3—C4—C24108.2 (4)C20—C19—H19B108.7
C23—C4—C24107.3 (4)C18—C19—H19B108.7
C3—C4—C5108.3 (4)H19A—C19—H19B107.6
C23—C4—C5115.2 (4)C19—C20—C21109.8 (4)
C24—C4—C5107.2 (3)C19—C20—C30109.0 (3)
C6—C5—C10110.5 (3)C21—C20—C30111.9 (4)
C6—C5—C4111.2 (4)C19—C20—C29110.4 (4)
C10—C5—C4117.1 (3)C21—C20—C29109.4 (4)
C6—C5—H5A105.7C30—C20—C29106.3 (4)
C10—C5—H5A105.7C22—C21—C20112.6 (3)
C4—C5—H5A105.7C22—C21—H21A109.1
C7—C6—C5110.8 (4)C20—C21—H21A109.1
C7—C6—H6A109.5C22—C21—H21B109.1
C5—C6—H6A109.5C20—C21—H21B109.1
C7—C6—H6B109.5H21A—C21—H21B107.8
C5—C6—H6B109.5C21—C22—C17114.6 (4)
H6A—C6—H6B108.1C21—C22—H22A108.6
C6—C7—C8113.8 (3)C17—C22—H22A108.6
C6—C7—H7A108.8C21—C22—H22B108.6
C8—C7—H7A108.8C17—C22—H22B108.6
C6—C7—H7B108.8H22A—C22—H22B107.6
C8—C7—H7B108.8C4—C23—H23A109.5
H7A—C7—H7B107.7C4—C23—H23B109.5
C7—C8—C9110.4 (3)H23A—C23—H23B109.5
C7—C8—C26107.4 (3)C4—C23—H23C109.5
C9—C8—C26109.8 (3)H23A—C23—H23C109.5
C7—C8—C14110.3 (3)H23B—C23—H23C109.5
C9—C8—C14108.5 (3)C4—C24—H24A109.5
C26—C8—C14110.5 (3)C4—C24—H24B109.5
C11—C9—C8107.9 (3)H24A—C24—H24B109.5
C11—C9—C10115.1 (3)C4—C24—H24C109.5
C8—C9—C10118.8 (3)H24A—C24—H24C109.5
C11—C9—H9A104.5H24B—C24—H24C109.5
C8—C9—H9A104.5C10—C25—H25A109.5
C10—C9—H9A104.5C10—C25—H25B109.5
C25—C10—C1108.3 (3)H25A—C25—H25B109.5
C25—C10—C9115.1 (3)C10—C25—H25C109.5
C1—C10—C9106.5 (3)H25A—C25—H25C109.5
C25—C10—C5112.3 (4)H25B—C25—H25C109.5
C1—C10—C5107.3 (3)C8—C26—H26A109.5
C9—C10—C5106.9 (3)C8—C26—H26B109.5
O2—C11—C12119.7 (4)H26A—C26—H26B109.5
O2—C11—C9123.2 (4)C8—C26—H26C109.5
C12—C11—C9117.0 (3)H26A—C26—H26C109.5
C13—C12—C11124.7 (4)H26B—C26—H26C109.5
C13—C12—H12A117.7C14—C27—H27A109.5
C11—C12—H12A117.7C14—C27—H27B109.5
C12—C13—C18119.1 (4)H27A—C27—H27B109.5
C12—C13—C14120.5 (4)C14—C27—H27C109.5
C18—C13—C14120.3 (3)H27A—C27—H27C109.5
C13—C14—C15112.1 (3)H27B—C27—H27C109.5
C13—C14—C27106.2 (3)C17—C28—H28A109.5
C15—C14—C27107.0 (3)C17—C28—H28B109.5
C13—C14—C8109.3 (3)H28A—C28—H28B109.5
C15—C14—C8110.3 (3)C17—C28—H28C109.5
C27—C14—C8111.9 (3)H28A—C28—H28C109.5
C16—C15—C14114.7 (3)H28B—C28—H28C109.5
C16—C15—H15A108.6C20—C29—H29A109.5
C14—C15—H15A108.6C20—C29—H29B109.5
C16—C15—H15B108.6H29A—C29—H29B109.5
C14—C15—H15B108.6C20—C29—H29C109.5
H15A—C15—H15B107.6H29A—C29—H29C109.5
C17—C16—C15113.2 (3)H29B—C29—H29C109.5
C17—C16—H16A108.9O3—C30—O4121.7 (4)
C15—C16—H16A108.9O3—C30—C20125.5 (4)
C17—C16—H16B108.9O4—C30—C20112.8 (4)
D—H···AD—HH···AD···AD—H···A
O4—H4A···O2i0.822.042.787 (4)151
C1—H1A···O20.972.362.969 (5)120
C25—H25B···O20.962.393.021 (5)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯O2i0.822.042.787 (4)151
C1—H1A⋯O20.972.362.969 (5)120
C25—H25B⋯O20.962.393.021 (5)123

Symmetry code: (i) .

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Journal:  Bioorg Med Chem       Date:  2004-08-15       Impact factor: 3.641

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Journal:  J Med Chem       Date:  2006-09-07       Impact factor: 7.446

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  4 in total

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