Literature DB >> 21582825

5-Ethyl-4a-meth-oxy-1,3-dimethyl-4a,5-dihydro-benzo[g]pteridine-2,4(1H,3H)dione.

Petra Ménová, Václav Eigner, Radek Cibulka, Jan Cejka, Hana Dvořáková.   

Abstract

The title compound, C(15)H(18)N(4)O(3), was formed by the reaction of methanol with 5-ethyl-1,3-dimethyl-alloxazinium perchlorate. Its structure mimics those of possible flavin inter-mediates in flavoenzymes. The heterocyclic rings are substituted with methyl, ethyl and meth-oxy groups. The central tricyclic skeleton is bent due to the presence of an sp(3) C atom. There are weak inter-molecular C-H⋯O inter-actions in the structure, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582825      PMCID: PMC2969355          DOI: 10.1107/S1600536809020856

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

in the context of this article, a C4a-adduct is a compound with a nucleophile covalently bound to atom C4a of the flavin fragment; isoalloxazines are natural flavin derivatives, alloxazines are their isomers. For the biological relevance of C4a-adducts in flavoenzymes, see: Palfey & Massey (1998 ▶); Massey (2000 ▶); Müller (1991 ▶). For the preparation of C4a-isoalloxazine adducts, see: Kemal & Bruice (1976 ▶); Kemal et al. (1977 ▶); Hoegy & Mariano (1997 ▶). For the crystal structures of isoalloxazine adducts, see: Bolognesi et al. (1978 ▶). For the crystal structures of reduced isoalloxazines, see: Werner & Rönnquist (1970 ▶); Norrestam & Von Glehn (1972 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For the extinction correction, see: Larson (1970 ▶).

Experimental

Crystal data

C15H18N4O3 M = 302.33 Monoclinic, a = 10.3958 (2) Å b = 12.7174 (2) Å c = 10.9421 (2) Å β = 100.4727 (16)° V = 1422.53 (4) Å3 Z = 4 Cu Kα radiation μ = 0.83 mm−1 T = 150 K 0.50 × 0.28 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur diffractometer Absorption correction: analytical (de Meulenaer & Tompa, 1965 ▶) T min = 0.76, T max = 0.88 18511 measured reflections 2996 independent reflections 2692 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.121 S = 0.99 2996 reflections 200 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2005 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2005 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: Superflip (Palatinus & Chapuis, 2006 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: CRYSTALS and PARST97 (Nardelli, 1997). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020856/fb2153sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020856/fb2153Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H18N4O3F(000) = 640
Mr = 302.33Dx = 1.412 Mg m3
Monoclinic, P21/nMelting point = 384–386 K
Hall symbol: -P 2ynCu Kα radiation, λ = 1.54184 Å
a = 10.3958 (2) ÅCell parameters from 11727 reflections
b = 12.7174 (2) Åθ = 4–77°
c = 10.9421 (2) ŵ = 0.83 mm1
β = 100.4727 (16)°T = 150 K
V = 1422.53 (4) Å3Prism, colourless
Z = 40.50 × 0.28 × 0.15 mm
Oxford Diffraction Xcalibur diffractometer2996 independent reflections
graphite2692 reflections with I > 2σ(I)
Detector resolution: 8.1917 pixels mm-1Rint = 0.025
φ and ω scansθmax = 77.5°, θmin = 5.4°
Absorption correction: analytical (de Meulenaer & Tompa, 1965)h = −13→13
Tmin = 0.76, Tmax = 0.88k = −15→15
18511 measured reflectionsl = −12→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.121 Modified Sheldrick (2008) w = 1/[σ2(F2) + (0.08P)2 + 0.33P], where P = [max(Fo2,0) + 2Fc2]/3
S = 0.99(Δ/σ)max = 0.0003
2996 reflectionsΔρmax = 0.23 e Å3
200 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: Larson (1970), Equation 22
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 29 (5)
xyzUiso*/Ueq
O10.43813 (9)0.38054 (7)0.10771 (8)0.0341
C20.53277 (11)0.36250 (9)0.18746 (11)0.0269
N30.65728 (10)0.37227 (8)0.16350 (9)0.0295
C40.67024 (14)0.39751 (11)0.03524 (12)0.0394
C50.77221 (12)0.37049 (9)0.25223 (12)0.0308
O60.87775 (9)0.38486 (8)0.22244 (10)0.0413
N70.75942 (9)0.35479 (8)0.37412 (10)0.0293
C80.87888 (12)0.36402 (11)0.46793 (13)0.0388
C90.63877 (10)0.35461 (8)0.41330 (11)0.0249
N100.63770 (9)0.37433 (8)0.52755 (9)0.0272
C110.51698 (11)0.37383 (9)0.56668 (11)0.0260
C120.51588 (13)0.38898 (10)0.69269 (11)0.0317
C130.39963 (14)0.39033 (10)0.73696 (11)0.0340
C140.28241 (13)0.37940 (9)0.65335 (12)0.0333
C150.28184 (12)0.36561 (9)0.52737 (12)0.0301
C160.39920 (11)0.36095 (8)0.48170 (10)0.0248
N170.40282 (9)0.34548 (8)0.35602 (9)0.0257
C180.27877 (11)0.31653 (11)0.27437 (11)0.0328
C190.19478 (12)0.41186 (13)0.22860 (13)0.0412
C200.52333 (10)0.31848 (9)0.31740 (10)0.0249
O210.53556 (8)0.20753 (6)0.29281 (7)0.0295
C220.54526 (16)0.14088 (10)0.39936 (13)0.0417
H410.75670.38050.02560.0569*
H420.65300.47080.01770.0574*
H430.60970.3549−0.01970.0574*
H810.86960.31960.53690.0560*
H820.89320.43480.49480.0553*
H830.95250.34000.43450.0558*
H1210.59910.39890.74790.0377*
H1310.39990.39910.82140.0392*
H1410.20220.38140.68050.0402*
H1510.20030.35810.47380.0353*
H1810.22890.27030.32070.0369*
H1820.29820.27740.20360.0371*
H1910.10710.38890.19440.0565*
H1920.19170.45970.29700.0566*
H1930.23160.44950.16410.0564*
H2210.54530.06970.37210.0593*
H2220.62860.15450.45910.0602*
H2230.47250.15090.44320.0599*
U11U22U33U12U13U23
O10.0330 (5)0.0392 (5)0.0302 (4)0.0028 (4)0.0063 (3)0.0028 (3)
C20.0302 (6)0.0222 (5)0.0303 (5)0.0018 (4)0.0110 (4)−0.0008 (4)
N30.0308 (5)0.0291 (5)0.0322 (5)0.0028 (4)0.0156 (4)0.0040 (4)
C40.0483 (7)0.0396 (7)0.0363 (7)0.0079 (6)0.0236 (6)0.0081 (5)
C50.0302 (6)0.0237 (6)0.0425 (7)0.0025 (4)0.0174 (5)0.0041 (4)
O60.0300 (5)0.0432 (5)0.0566 (6)0.0001 (4)0.0231 (4)0.0068 (4)
N70.0218 (5)0.0302 (5)0.0379 (5)0.0017 (4)0.0107 (4)0.0035 (4)
C80.0229 (6)0.0440 (7)0.0491 (7)0.0016 (5)0.0056 (5)0.0067 (6)
C90.0226 (5)0.0207 (5)0.0328 (6)0.0009 (4)0.0085 (4)0.0025 (4)
N100.0256 (5)0.0260 (5)0.0306 (5)0.0007 (3)0.0068 (4)0.0020 (4)
C110.0271 (6)0.0218 (5)0.0305 (6)−0.0003 (4)0.0093 (4)0.0007 (4)
C120.0393 (6)0.0270 (6)0.0295 (6)0.0004 (5)0.0082 (5)−0.0004 (4)
C130.0481 (7)0.0271 (6)0.0307 (6)0.0007 (5)0.0179 (5)0.0006 (4)
C140.0388 (6)0.0261 (6)0.0407 (6)−0.0025 (5)0.0227 (5)−0.0008 (5)
C150.0285 (6)0.0265 (6)0.0381 (6)−0.0040 (4)0.0137 (5)−0.0029 (4)
C160.0272 (5)0.0202 (5)0.0292 (5)−0.0020 (4)0.0111 (4)−0.0005 (4)
N170.0220 (4)0.0279 (5)0.0286 (5)−0.0020 (4)0.0082 (3)−0.0034 (4)
C180.0247 (5)0.0412 (7)0.0334 (6)−0.0084 (5)0.0074 (4)−0.0088 (5)
C190.0238 (5)0.0612 (9)0.0373 (6)0.0020 (5)0.0020 (5)−0.0044 (6)
C200.0244 (5)0.0228 (5)0.0293 (5)−0.0003 (4)0.0097 (4)−0.0006 (4)
O210.0350 (4)0.0223 (4)0.0342 (4)0.0002 (3)0.0141 (3)−0.0013 (3)
C220.0614 (9)0.0254 (6)0.0435 (7)0.0023 (6)0.0231 (6)0.0045 (5)
O1—C21.2124 (15)C12—H1210.969
C2—N31.3723 (15)C13—C141.3914 (19)
C2—C201.5476 (15)C13—H1310.930
N3—C41.4696 (15)C14—C151.3886 (18)
N3—C51.3961 (17)C14—H1410.935
C4—H410.949C15—C161.4012 (16)
C4—H420.962C15—H1510.944
C4—H430.955C16—N171.3965 (14)
C5—O61.2138 (15)N17—C181.4758 (14)
C5—N71.3786 (16)N17—C201.4347 (14)
N7—C81.4650 (16)C18—C191.524 (2)
N7—C91.3973 (14)C18—H1810.983
C8—H810.961C18—H1820.972
C8—H820.950C19—H1910.966
C8—H830.956C19—H1920.969
C9—N101.2771 (16)C19—H1930.985
C9—C201.5149 (15)C20—O211.4464 (13)
N10—C111.3977 (15)O21—C221.4300 (15)
C11—C121.3944 (16)C22—H2210.953
C11—C161.4060 (16)C22—H2221.002
C12—C131.3813 (18)C22—H2230.975
O1—C2—N3121.04 (11)C13—C14—C15120.70 (11)
O1—C2—C20123.43 (10)C13—C14—H141120.9
N3—C2—C20115.33 (10)C15—C14—H141118.4
C2—N3—C4117.11 (11)C14—C15—C16120.83 (12)
C2—N3—C5125.69 (10)C14—C15—H151118.1
C4—N3—C5116.89 (10)C16—C15—H151121.1
N3—C4—H41108.0C11—C16—C15117.99 (10)
N3—C4—H42110.9C11—C16—N17119.44 (10)
H41—C4—H42110.2C15—C16—N17122.56 (10)
N3—C4—H43108.2C16—N17—C18117.02 (9)
H41—C4—H43109.2C16—N17—C20120.34 (9)
H42—C4—H43110.3C18—N17—C20118.40 (9)
N3—C5—O6120.78 (12)N17—C18—C19112.69 (10)
N3—C5—N7117.02 (10)N17—C18—H181108.8
O6—C5—N7122.17 (12)C19—C18—H181108.7
C5—N7—C8116.60 (10)N17—C18—H182109.0
C5—N7—C9123.15 (10)C19—C18—H182109.6
C8—N7—C9118.62 (10)H181—C18—H182108.1
N7—C8—H81108.0C18—C19—H191109.3
N7—C8—H82111.0C18—C19—H192110.0
H81—C8—H82110.2H191—C19—H192109.2
N7—C8—H83110.0C18—C19—H193110.3
H81—C8—H83108.3H191—C19—H193109.3
H82—C8—H83109.3H192—C19—H193108.6
N7—C9—N10117.91 (10)C2—C20—C9110.62 (9)
N7—C9—C20115.48 (10)C2—C20—N17112.87 (9)
N10—C9—C20126.22 (10)C9—C20—N17110.34 (9)
C9—N10—C11117.84 (10)C2—C20—O2199.18 (8)
N10—C11—C12118.13 (11)C9—C20—O21109.84 (9)
N10—C11—C16121.37 (10)N17—C20—O21113.53 (9)
C12—C11—C16120.49 (11)C20—O21—C22114.97 (9)
C11—C12—C13120.89 (12)O21—C22—H221108.1
C11—C12—H121117.9O21—C22—H222110.8
C13—C12—H121121.2H221—C22—H222108.6
C12—C13—C14119.06 (11)O21—C22—H223112.2
C12—C13—H131120.3H221—C22—H223108.8
C14—C13—H131120.6H222—C22—H223108.2
D—H···AD—HH···AD···AD—H···A
C4—H42···O1i0.962.433.3230 (18)155
C14—H141···O21ii0.942.563.3999 (18)149
C19—H191···O6iii0.972.463.3021 (18)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H42⋯O1i0.962.433.3230 (18)155
C14—H141⋯O21ii0.942.563.3999 (18)149
C19—H191⋯O6iii0.972.463.3021 (18)146

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Reaction of 3O2 with dihydroflavins. 1. N3,5-dimethyl-1,5-dihydrolumiflavin and 1,5-dihydroisoalloxazines.

Authors:  C Kemal; T W Chan; R C Bruice
Journal:  J Am Chem Soc       Date:  1977-10-26       Impact factor: 15.419

Review 3.  The chemical and biological versatility of riboflavin.

Authors:  V Massey
Journal:  Biochem Soc Trans       Date:  2000       Impact factor: 5.407

4.  Simple synthesis of a 4a-hydroperoxy adduct of a 1,5-dihydroflavine: preliminary studies of a model for bacterial luciferase.

Authors:  C Kemal; T C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  1976-04       Impact factor: 11.205

  4 in total

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