Literature DB >> 21582814

2-Hydr-oxy-1-methoxy-anthraquinone monohydrate.

Zhi-Meng Liu1, Yuan-Qi Jiao.   

Abstract

The title compound, C(15)H(10)O(4)·H(2)O, also known as alizarin 1-methyl ether monohydrate, was isolated from Morinda officinalis How. The anthraquinone ring system is almost planar, the dihedral angle between the two outer benzene rings being 3.07 (4)°. In the crystal structure, O-H⋯O hydrogen bonds link the organic mol-ecules and the water mol-ecules, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582814      PMCID: PMC2969380          DOI: 10.1107/S1600536809021254

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological properties of anthraquinone derivatives, see: Kim et al. (2005 ▶) and of 1-meth­oxy-2-hydroxy­anthraquinone, see: Ali et al. (2000 ▶); Jia et al. (2007 ▶); Wu et al. (2003 ▶). For related structures, see: Boonnak et al. (2005 ▶); Ng et al. (2005 ▶). For the structure of another compound isolated from Morinda officinalis How., see: Xu et al. (2009 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H10O4·H2O M = 272.25 Triclinic, a = 7.9583 (19) Å b = 8.269 (2) Å c = 10.188 (2) Å α = 102.462 (3)° β = 102.364 (3)° γ = 100.653 (3)° V = 620.4 (2) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.30 × 0.20 × 0.15 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.973, T max = 0.986 3218 measured reflections 2198 independent reflections 1488 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.147 S = 1.04 2198 reflections 191 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809021254/bg2258sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021254/bg2258Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10O4·H2OZ = 2
Mr = 272.25F(000) = 284.0
Triclinic, P1Dx = 1.457 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9583 (19) ÅCell parameters from 1018 reflections
b = 8.269 (2) Åθ = 2.6–26.2°
c = 10.188 (2) ŵ = 0.11 mm1
α = 102.462 (3)°T = 298 K
β = 102.364 (3)°Block, yellow
γ = 100.653 (3)°0.30 × 0.20 × 0.15 mm
V = 620.4 (2) Å3
Bruker APEXII area-detector diffractometer2198 independent reflections
Radiation source: fine-focus sealed tube1488 reflections with I > 2σ(I)
graphiteRint = 0.013
φ and ω scansθmax = 25.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.973, Tmax = 0.986k = −9→9
3218 measured reflectionsl = −12→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0778P)2 + 0.0805P] where P = (Fo2 + 2Fc2)/3
2198 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6640 (3)0.3815 (2)0.3121 (2)0.0509 (5)
C20.7049 (3)0.2214 (2)0.30375 (19)0.0476 (5)
C30.7720 (3)−0.0406 (2)0.1655 (2)0.0485 (5)
C40.8497 (3)−0.2806 (2)0.0176 (2)0.0555 (5)
H40.8772−0.32190.09550.067*
C50.8632 (3)−0.3695 (3)−0.1086 (3)0.0645 (6)
H50.8980−0.4717−0.11580.077*
C60.8257 (3)−0.3093 (3)−0.2248 (3)0.0668 (6)
H60.8347−0.3707−0.30990.080*
C70.7746 (3)−0.1565 (3)−0.2142 (2)0.0600 (6)
H70.7505−0.1146−0.29210.072*
C80.7044 (3)0.0971 (2)−0.07708 (19)0.0500 (5)
C90.6444 (3)0.3450 (2)0.0710 (2)0.0514 (5)
H90.62100.3853−0.00780.062*
C100.6335 (3)0.4407 (3)0.1954 (2)0.0542 (5)
H100.60540.54580.20060.065*
C110.7216 (2)0.1254 (2)0.17820 (19)0.0438 (5)
C120.6896 (2)0.1890 (2)0.06001 (19)0.0444 (5)
C130.7951 (2)−0.1285 (2)0.0293 (2)0.0462 (5)
C140.7593 (2)−0.0664 (2)−0.08792 (19)0.0472 (5)
C150.8905 (4)0.2159 (3)0.5181 (2)0.0869 (8)
H15A0.97260.16610.47630.130*
H15B0.88430.17910.60050.130*
H15C0.92980.33800.54250.130*
O10.6741 (2)0.15409 (19)−0.17812 (15)0.0741 (5)
O20.7941 (3)−0.10671 (19)0.26171 (16)0.0772 (5)
O30.6543 (2)0.46790 (18)0.43714 (14)0.0679 (5)
H30.63150.55940.43170.102*
O40.7180 (2)0.16259 (18)0.42088 (14)0.0616 (4)
O1W0.5800 (3)0.7728 (2)0.44181 (19)0.0829 (6)
H1W0.597 (4)0.844 (4)0.393 (4)0.162 (15)*
H2W0.472 (2)0.762 (4)0.450 (4)0.134 (14)*
U11U22U33U12U13U23
C10.0497 (12)0.0517 (11)0.0508 (11)0.0118 (9)0.0133 (9)0.0132 (9)
C20.0446 (11)0.0537 (11)0.0457 (11)0.0084 (9)0.0097 (8)0.0211 (9)
C30.0464 (11)0.0500 (11)0.0492 (11)0.0071 (9)0.0100 (9)0.0196 (9)
C40.0493 (12)0.0548 (12)0.0635 (13)0.0132 (9)0.0144 (10)0.0182 (10)
C50.0549 (14)0.0588 (13)0.0799 (16)0.0187 (10)0.0190 (11)0.0134 (11)
C60.0577 (14)0.0715 (15)0.0633 (14)0.0117 (12)0.0181 (11)0.0030 (11)
C70.0561 (13)0.0671 (14)0.0510 (12)0.0073 (11)0.0120 (10)0.0128 (10)
C80.0450 (11)0.0557 (11)0.0432 (11)0.0020 (9)0.0041 (8)0.0166 (9)
C90.0515 (12)0.0506 (11)0.0516 (11)0.0082 (9)0.0067 (9)0.0226 (9)
C100.0557 (13)0.0504 (11)0.0565 (12)0.0133 (9)0.0096 (10)0.0191 (10)
C110.0370 (10)0.0449 (10)0.0490 (11)0.0051 (8)0.0090 (8)0.0179 (8)
C120.0384 (10)0.0451 (10)0.0462 (11)0.0028 (8)0.0060 (8)0.0163 (8)
C130.0360 (10)0.0464 (11)0.0533 (11)0.0039 (8)0.0094 (8)0.0146 (9)
C140.0382 (10)0.0504 (11)0.0468 (11)0.0010 (8)0.0082 (8)0.0115 (8)
C150.100 (2)0.0976 (19)0.0591 (15)0.0295 (16)−0.0015 (14)0.0303 (14)
O10.1049 (13)0.0732 (10)0.0481 (9)0.0260 (9)0.0141 (8)0.0263 (7)
O20.1226 (15)0.0696 (10)0.0615 (10)0.0433 (10)0.0352 (9)0.0355 (8)
O30.0926 (12)0.0649 (10)0.0561 (9)0.0349 (9)0.0257 (8)0.0172 (7)
O40.0760 (10)0.0684 (9)0.0503 (8)0.0229 (8)0.0207 (7)0.0277 (7)
O1W0.1221 (18)0.0768 (12)0.0776 (12)0.0454 (11)0.0478 (11)0.0384 (10)
C1—O31.345 (2)C8—O11.218 (2)
C1—C101.373 (3)C8—C121.479 (3)
C1—C21.410 (3)C8—C141.486 (3)
C2—O41.374 (2)C9—C101.371 (3)
C2—C111.399 (3)C9—C121.390 (3)
C3—O21.218 (2)C9—H90.9300
C3—C131.487 (3)C10—H100.9300
C3—C111.487 (3)C11—C121.408 (2)
C4—C51.373 (3)C13—C141.395 (3)
C4—C131.394 (3)C15—O41.437 (3)
C4—H40.9300C15—H15A0.9600
C5—C61.377 (3)C15—H15B0.9600
C5—H50.9300C15—H15C0.9600
C6—C71.387 (3)O3—H30.8200
C6—H60.9300O1W—H1W0.86 (3)
C7—C141.382 (3)O1W—H2W0.87 (3)
C7—H70.9300
O3—C1—C10123.24 (18)C12—C9—H9119.2
O3—C1—C2116.77 (17)C9—C10—C1120.01 (18)
C10—C1—C2119.98 (18)C9—C10—H10120.0
O4—C2—C11122.55 (17)C1—C10—H10120.0
O4—C2—C1117.08 (17)C2—C11—C12118.56 (17)
C11—C2—C1120.29 (16)C2—C11—C3122.38 (16)
O2—C3—C13119.21 (18)C12—C11—C3119.06 (17)
O2—C3—C11122.56 (18)C9—C12—C11119.58 (18)
C13—C3—C11118.22 (16)C9—C12—C8117.85 (17)
C5—C4—C13120.20 (19)C11—C12—C8122.57 (17)
C5—C4—H4119.9C4—C13—C14118.95 (18)
C13—C4—H4119.9C4—C13—C3118.85 (17)
C4—C5—C6120.9 (2)C14—C13—C3122.18 (17)
C4—C5—H5119.6C7—C14—C13120.27 (19)
C6—C5—H5119.6C7—C14—C8119.88 (18)
C5—C6—C7119.6 (2)C13—C14—C8119.85 (18)
C5—C6—H6120.2O4—C15—H15A109.5
C7—C6—H6120.2O4—C15—H15B109.5
C14—C7—C6120.1 (2)H15A—C15—H15B109.5
C14—C7—H7120.0O4—C15—H15C109.5
C6—C7—H7119.9H15A—C15—H15C109.5
O1—C8—C12121.26 (19)H15B—C15—H15C109.5
O1—C8—C14120.74 (18)C1—O3—H3109.5
C12—C8—C14117.99 (16)C2—O4—C15115.30 (16)
C10—C9—C12121.52 (18)H1W—O1W—H2W107.3 (16)
C10—C9—H9119.2
O3—C1—C2—O44.7 (3)C3—C11—C12—C8−0.1 (3)
C10—C1—C2—O4−174.23 (17)O1—C8—C12—C9−1.6 (3)
O3—C1—C2—C11−178.49 (17)C14—C8—C12—C9177.72 (16)
C10—C1—C2—C112.6 (3)O1—C8—C12—C11179.19 (17)
C13—C4—C5—C61.0 (3)C14—C8—C12—C11−1.5 (3)
C4—C5—C6—C70.3 (3)C5—C4—C13—C14−1.7 (3)
C5—C6—C7—C14−0.7 (3)C5—C4—C13—C3176.53 (17)
C12—C9—C10—C1−1.3 (3)O2—C3—C13—C4−3.0 (3)
O3—C1—C10—C9−179.48 (18)C11—C3—C13—C4177.29 (16)
C2—C1—C10—C9−0.6 (3)O2—C3—C13—C14175.24 (18)
O4—C2—C11—C12174.08 (16)C11—C3—C13—C14−4.5 (3)
C1—C2—C11—C12−2.5 (3)C6—C7—C14—C13−0.1 (3)
O4—C2—C11—C3−6.0 (3)C6—C7—C14—C8−179.97 (18)
C1—C2—C11—C3177.34 (16)C4—C13—C14—C71.3 (3)
O2—C3—C11—C23.3 (3)C3—C13—C14—C7−176.93 (17)
C13—C3—C11—C2−176.94 (16)C4—C13—C14—C8−178.80 (17)
O2—C3—C11—C12−176.78 (18)C3—C13—C14—C83.0 (3)
C13—C3—C11—C122.9 (3)O1—C8—C14—C7−0.7 (3)
C10—C9—C12—C111.3 (3)C12—C8—C14—C7179.92 (16)
C10—C9—C12—C8−177.90 (17)O1—C8—C14—C13179.34 (18)
C2—C11—C12—C90.6 (3)C12—C8—C14—C130.0 (3)
C3—C11—C12—C9−179.25 (16)C11—C2—O4—C1595.3 (2)
C2—C11—C12—C8179.82 (16)C1—C2—O4—C15−87.9 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O2i0.86 (3)2.31 (2)2.960 (3)133 (3)
O1W—H2W···O4ii0.87 (3)2.30 (2)3.072 (3)149 (3)
O3—H3···O1W0.821.872.687 (2)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O2i0.86 (3)2.31 (2)2.960 (3)133 (3)
O1W—H2W⋯O4ii0.87 (3)2.30 (2)3.072 (3)149 (3)
O3—H3⋯O1W0.821.872.687 (2)173

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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4.  3-Hydr-oxy-1,2-dimethoxy-anthraquinone.

Authors:  Yong-Jun Xu; Xiao-Xi Yang; Hong-Bin Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

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1.  3-Hydr-oxy-1,2-dimethoxy-anthraquinone.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06
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