Literature DB >> 21582797

Isoamyl 2-(5-bromo-3-methyl-sulfin-yl-1-benzofuran-2--yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(16)H(19)BrO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. The crystal structure exhibits aromatic π-π inter-actions between the benzene rings of adjacent mol-ecules [centroid-centroid distance = 3.643 (2) Å] and nonclassical C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582797      PMCID: PMC2969326          DOI: 10.1107/S1600536809020613

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-(5-bromo-3-methyl­sulfin­yl-1-benzofuran-2-yl)acetate derivatives. see: Choi et al. (2009a ▶,b ▶). For the biological and pharmacological activity of benzofuran compounds, see: Howlett et al. (1999 ▶); Ward (1997 ▶).

Experimental

Crystal data

C16H19BrO4S M = 387.28 Triclinic, a = 8.3704 (4) Å b = 10.2956 (6) Å c = 10.524 (1) Å α = 99.977 (1)° β = 105.230 (1)° γ = 100.681 (1)° V = 836.04 (10) Å3 Z = 2 Mo Kα radiation μ = 2.60 mm−1 T = 173 K 0.60 × 0.40 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan SADABS (Sheldrick, 1999 ▶) T min = 0.302, T max = 0.769 7179 measured reflections 3579 independent reflections 3304 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.072 S = 1.04 3579 reflections 202 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.59 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536809020613/cv2569sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020613/cv2569Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19BrO4SZ = 2
Mr = 387.28F(000) = 396
Triclinic, P1Dx = 1.538 Mg m3
Hall symbol: -p 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3704 (4) ÅCell parameters from 5367 reflections
b = 10.2956 (6) Åθ = 2.1–28.2°
c = 10.524 (1) ŵ = 2.60 mm1
α = 99.977 (1)°T = 173 K
β = 105.230 (1)°Block, colourless
γ = 100.681 (1)°0.60 × 0.40 × 0.10 mm
V = 836.04 (10) Å3
Bruker SMART CCD diffractometer3579 independent reflections
Radiation source: fine-focus sealed tube3304 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.6°
φ– and ω–scansh = −10→10
Absorption correction: multi-scan SADABS (Sheldrick, 1999)k = −13→13
Tmin = 0.302, Tmax = 0.769l = −13→13
7179 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: difference Fourier map
wR(F2) = 0.072H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0362P)2 + 0.2834P] where P = (Fo2 + 2Fc2)/3
3579 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.59 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.09369 (2)0.119447 (19)0.255278 (19)0.03270 (8)
S0.83063 (5)0.46517 (4)0.59651 (5)0.02459 (11)
O10.81346 (14)0.07754 (11)0.46466 (12)0.0215 (2)
O21.24425 (15)0.21464 (13)0.82349 (12)0.0254 (3)
O31.00246 (16)0.27962 (14)0.82283 (14)0.0330 (3)
O40.73464 (19)0.52767 (13)0.49185 (15)0.0335 (3)
C10.7776 (2)0.28864 (16)0.52535 (17)0.0202 (3)
C20.6130 (2)0.20245 (16)0.44185 (16)0.0195 (3)
C30.4469 (2)0.21889 (17)0.39790 (17)0.0222 (3)
H30.42140.30250.41950.027*
C40.3225 (2)0.10378 (18)0.32050 (17)0.0230 (3)
C50.3554 (2)−0.02394 (17)0.28541 (18)0.0244 (3)
H50.2667−0.09780.23270.029*
C60.5200 (2)−0.04033 (17)0.32914 (18)0.0237 (3)
H60.5453−0.12400.30690.028*
C70.6445 (2)0.07386 (16)0.40746 (17)0.0202 (3)
C80.8916 (2)0.20979 (16)0.53584 (17)0.0203 (3)
C91.0744 (2)0.23516 (17)0.61405 (18)0.0225 (3)
H9A1.13710.31910.60230.027*
H9B1.12060.16190.57900.027*
C101.0990 (2)0.24522 (16)0.76378 (18)0.0226 (3)
C111.2757 (2)0.2174 (2)0.96764 (19)0.0344 (4)
H11A1.18450.15270.98030.041*
H11B1.28020.30731.01740.041*
C121.4438 (2)0.18093 (19)1.01854 (19)0.0301 (4)
H12A1.44170.09730.95840.036*
H12B1.45310.16251.10720.036*
C131.6038 (2)0.28719 (19)1.03000 (19)0.0290 (4)
H131.59490.30640.94070.035*
C141.6262 (3)0.4197 (2)1.1307 (2)0.0483 (6)
H14A1.53160.45881.10040.072*
H14B1.73040.48191.13730.072*
H14C1.63070.40181.21800.072*
C151.7591 (3)0.2284 (3)1.0724 (2)0.0476 (6)
H15A1.85980.29221.07460.071*
H15B1.74400.14491.00850.071*
H15C1.77100.21111.16080.071*
C160.7171 (3)0.4627 (2)0.7195 (2)0.0363 (5)
H16A0.73070.55400.76800.055*
H16B0.76190.41090.78190.055*
H16C0.59820.42170.67430.055*
U11U22U33U12U13U23
Br0.01875 (11)0.04364 (13)0.03281 (12)0.00906 (8)0.00246 (8)0.00820 (8)
S0.0252 (2)0.01788 (19)0.0290 (2)0.00410 (15)0.00857 (18)0.00199 (16)
O10.0193 (6)0.0199 (5)0.0249 (6)0.0061 (4)0.0063 (5)0.0035 (5)
O20.0212 (6)0.0340 (6)0.0203 (6)0.0080 (5)0.0042 (5)0.0061 (5)
O30.0244 (7)0.0439 (8)0.0290 (7)0.0089 (6)0.0098 (6)0.0008 (6)
O40.0438 (8)0.0243 (6)0.0391 (8)0.0130 (6)0.0164 (6)0.0136 (6)
C10.0208 (8)0.0177 (7)0.0213 (8)0.0042 (6)0.0060 (6)0.0038 (6)
C20.0215 (8)0.0201 (7)0.0174 (8)0.0050 (6)0.0060 (6)0.0055 (6)
C30.0231 (8)0.0240 (8)0.0213 (8)0.0084 (6)0.0067 (7)0.0076 (6)
C40.0171 (8)0.0325 (9)0.0201 (8)0.0066 (6)0.0048 (6)0.0086 (7)
C50.0221 (8)0.0270 (8)0.0207 (8)0.0005 (6)0.0060 (7)0.0034 (7)
C60.0265 (9)0.0201 (8)0.0243 (9)0.0047 (6)0.0100 (7)0.0020 (6)
C70.0196 (8)0.0227 (8)0.0200 (8)0.0068 (6)0.0072 (6)0.0061 (6)
C80.0208 (8)0.0192 (7)0.0206 (8)0.0039 (6)0.0070 (6)0.0037 (6)
C90.0190 (8)0.0235 (8)0.0250 (9)0.0063 (6)0.0063 (7)0.0053 (6)
C100.0178 (8)0.0192 (7)0.0264 (9)−0.0002 (6)0.0053 (7)0.0015 (6)
C110.0268 (10)0.0529 (12)0.0216 (9)0.0053 (8)0.0065 (7)0.0102 (8)
C120.0317 (10)0.0338 (9)0.0228 (9)0.0054 (7)0.0037 (7)0.0109 (7)
C130.0263 (9)0.0348 (10)0.0224 (9)0.0052 (7)0.0021 (7)0.0080 (7)
C140.0529 (14)0.0353 (11)0.0417 (13)0.0034 (10)0.0010 (11)−0.0012 (10)
C150.0338 (12)0.0684 (16)0.0400 (13)0.0200 (11)0.0044 (10)0.0130 (11)
C160.0512 (12)0.0335 (10)0.0317 (11)0.0175 (9)0.0215 (10)0.0054 (8)
Br—C41.9047 (17)C9—C101.517 (2)
S—O41.4984 (14)C9—H9A0.9700
S—C11.7651 (16)C9—H9B0.9700
S—C161.796 (2)C11—C121.509 (3)
O1—C71.374 (2)C11—H11A0.9700
O1—C81.3791 (19)C11—H11B0.9700
O2—C101.335 (2)C12—C131.527 (3)
O2—C111.464 (2)C12—H12A0.9700
O3—C101.208 (2)C12—H12B0.9700
C1—C81.358 (2)C13—C141.523 (3)
C1—C21.449 (2)C13—C151.528 (3)
C2—C31.397 (2)C13—H130.9800
C2—C71.403 (2)C14—H14A0.9600
C3—C41.384 (2)C14—H14B0.9600
C3—H30.9300C14—H14C0.9600
C4—C51.400 (2)C15—H15A0.9600
C5—C61.385 (2)C15—H15B0.9600
C5—H50.9300C15—H15C0.9600
C6—C71.381 (2)C16—H16A0.9600
C6—H60.9300C16—H16B0.9600
C8—C91.484 (2)C16—H16C0.9600
O4—S—C1106.60 (8)O2—C10—C9111.26 (14)
O4—S—C16105.52 (9)O2—C11—C12107.96 (15)
C1—S—C1698.25 (9)O2—C11—H11A110.1
C7—O1—C8106.47 (12)C12—C11—H11A110.1
C10—O2—C11114.98 (14)O2—C11—H11B110.1
C8—C1—C2107.39 (14)C12—C11—H11B110.1
C8—C1—S124.39 (13)H11A—C11—H11B108.4
C2—C1—S128.16 (12)C11—C12—C13116.26 (16)
C3—C2—C7119.64 (15)C11—C12—H12A108.2
C3—C2—C1135.88 (15)C13—C12—H12A108.2
C7—C2—C1104.44 (14)C11—C12—H12B108.2
C4—C3—C2116.29 (15)C13—C12—H12B108.2
C4—C3—H3121.9H12A—C12—H12B107.4
C2—C3—H3121.9C14—C13—C12112.39 (18)
C3—C4—C5123.73 (15)C14—C13—C15109.96 (18)
C3—C4—Br118.49 (13)C12—C13—C15108.72 (17)
C5—C4—Br117.77 (13)C14—C13—H13108.6
C6—C5—C4120.00 (15)C12—C13—H13108.6
C6—C5—H5120.0C15—C13—H13108.6
C4—C5—H5120.0C13—C14—H14A109.5
C7—C6—C5116.59 (15)C13—C14—H14B109.5
C7—C6—H6121.7H14A—C14—H14B109.5
C5—C6—H6121.7C13—C14—H14C109.5
O1—C7—C6125.46 (15)H14A—C14—H14C109.5
O1—C7—C2110.78 (14)H14B—C14—H14C109.5
C6—C7—C2123.75 (15)C13—C15—H15A109.5
C1—C8—O1110.91 (14)C13—C15—H15B109.5
C1—C8—C9133.32 (15)H15A—C15—H15B109.5
O1—C8—C9115.60 (14)C13—C15—H15C109.5
C8—C9—C10111.79 (14)H15A—C15—H15C109.5
C8—C9—H9A109.3H15B—C15—H15C109.5
C10—C9—H9A109.3S—C16—H16A109.5
C8—C9—H9B109.3S—C16—H16B109.5
C10—C9—H9B109.3H16A—C16—H16B109.5
H9A—C9—H9B107.9S—C16—H16C109.5
O3—C10—O2123.95 (17)H16A—C16—H16C109.5
O3—C10—C9124.76 (16)H16B—C16—H16C109.5
O4—S—C1—C8137.41 (15)C1—C2—C7—O10.44 (18)
C16—S—C1—C8−113.60 (16)C3—C2—C7—C61.1 (2)
O4—S—C1—C2−39.41 (17)C1—C2—C7—C6179.05 (16)
C16—S—C1—C269.57 (17)C2—C1—C8—O10.16 (19)
C8—C1—C2—C3177.04 (18)S—C1—C8—O1−177.22 (11)
S—C1—C2—C3−5.7 (3)C2—C1—C8—C9−174.86 (17)
C8—C1—C2—C7−0.36 (18)S—C1—C8—C97.8 (3)
S—C1—C2—C7176.90 (13)C7—O1—C8—C10.11 (18)
C7—C2—C3—C4−0.5 (2)C7—O1—C8—C9176.10 (14)
C1—C2—C3—C4−177.59 (18)C1—C8—C9—C1073.0 (2)
C2—C3—C4—C5−0.2 (2)O1—C8—C9—C10−101.84 (16)
C2—C3—C4—Br−179.23 (12)C11—O2—C10—O33.6 (2)
C3—C4—C5—C60.3 (3)C11—O2—C10—C9−178.09 (14)
Br—C4—C5—C6179.34 (13)C8—C9—C10—O3−26.2 (2)
C4—C5—C6—C70.3 (2)C8—C9—C10—O2155.53 (14)
C8—O1—C7—C6−178.93 (16)C10—O2—C11—C12−179.92 (14)
C8—O1—C7—C2−0.35 (17)O2—C11—C12—C1370.7 (2)
C5—C6—C7—O1177.40 (15)C11—C12—C13—C1462.3 (2)
C5—C6—C7—C2−1.0 (2)C11—C12—C13—C15−175.75 (17)
C3—C2—C7—O1−177.47 (14)
D—H···AD—HH···AD···AD—H···A
C3—H3···O4i0.932.563.437 (2)157
C5—H5···O3ii0.932.513.383 (2)157
C9—H9A···O4iii0.972.263.192 (2)162
C9—H9B···O1iv0.972.613.541 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O4i0.932.563.437 (2)157
C5—H5⋯O3ii0.932.513.383 (2)157
C9—H9A⋯O4iii0.972.263.192 (2)162
C9—H9B⋯O1iv0.972.613.541 (2)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Propyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-13

4.  Butyl 2-(5-bromo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08
  4 in total

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