| Literature DB >> 21582774 |
Chun-Yang Zheng1, Ting-Quan Sun.
Abstract
In the title compound, C(23)H(20)N(4)·1.5H(2)O, the mean planes of the imidazo[4,5-f][1,10]phenanthroline system and the benzene ring make a dihedral angle of 21.76 (2)°. One water O atom lies on a twofold rotation axis. The organic mol-ecules and water mol-ecules are linked via N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds. Weak inter-molecular C-H⋯N hydrogen bonds and π-π stacking inter-actions between inversion-related phenanthroline rings complete the three-dimensional hydrogen-bonding network in the crystal structure. The stacking distance is short at 3.513 (2) Å and the perpendicular distance between the rings is 3.355 Å. The three methyl groups are disordered over two positions, with a site-occupancy ratio of 0.875 (14):0.125 (14).Entities:
Year: 2009 PMID: 21582774 PMCID: PMC2969225 DOI: 10.1107/S1600536809020261
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C23H20N4·1.5H2O | |
| Mo | |
| Tetragonal, | Cell parameters from 5405 reflections |
| Hall symbol: P4nw 2abw | θ = 2.2–22.5° |
| µ = 0.08 mm−1 | |
| Block, yellow | |
| 0.16 × 0.13 × 0.10 mm | |
| Bruker SMART CCD area-detector diffractometer | 2508 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.5°, θmin = 1.9° |
| φ and ω scans | |
| 46858 measured reflections | |
| 2670 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2670 reflections | (Δ/σ)max < 0.001 |
| 304 parameters | Δρmax = 0.30 e Å−3 |
| 53 restraints | Δρmin = −0.15 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.7310 (2) | 0.4019 (2) | 1.19064 (17) | 0.0436 (7) | |
| C2 | 0.6832 (2) | 0.3733 (2) | 1.12626 (16) | 0.0412 (7) | |
| C3 | 0.6074 (2) | 0.4156 (2) | 1.10102 (16) | 0.0392 (7) | |
| C4 | 0.5709 (2) | 0.4934 (2) | 1.13671 (16) | 0.0399 (7) | |
| C5 | 0.6151 (2) | 0.5242 (2) | 1.20079 (17) | 0.0424 (7) | |
| C6 | 0.6959 (2) | 0.4778 (2) | 1.22760 (17) | 0.0453 (8) | |
| N1 | 0.7345 (2) | 0.5111 (2) | 1.28912 (17) | 0.0593 (9) | |
| C7 | 0.8061 (3) | 0.4692 (3) | 1.3142 (2) | 0.0723 (13) | |
| H7 | 0.8325 | 0.4915 | 1.3567 | 0.087* | |
| C8 | 0.8453 (3) | 0.3944 (4) | 1.2822 (3) | 0.0760 (14) | |
| H8 | 0.8961 | 0.3676 | 1.3027 | 0.091* | |
| C9 | 0.8074 (3) | 0.3605 (3) | 1.2194 (2) | 0.0623 (10) | |
| H9 | 0.8325 | 0.3104 | 1.1965 | 0.075* | |
| N2 | 0.5840 (2) | 0.5952 (2) | 1.23928 (16) | 0.0505 (7) | |
| C10 | 0.5114 (3) | 0.6373 (3) | 1.2156 (2) | 0.0538 (9) | |
| H10 | 0.4901 | 0.6860 | 1.2428 | 0.065* | |
| C11 | 0.4647 (3) | 0.6138 (3) | 1.1531 (2) | 0.0569 (9) | |
| H11 | 0.4139 | 0.6460 | 1.1385 | 0.068* | |
| C12 | 0.4950 (2) | 0.5420 (2) | 1.11298 (19) | 0.0504 (8) | |
| H12 | 0.4654 | 0.5254 | 1.0702 | 0.060* | |
| C13 | 0.6348 (2) | 0.3069 (2) | 1.02710 (16) | 0.0416 (7) | |
| C14 | 0.6341 (2) | 0.2461 (2) | 0.96339 (16) | 0.0426 (7) | |
| C15 | 0.5563 (2) | 0.2359 (2) | 0.92178 (18) | 0.0480 (8) | |
| H15 | 0.5038 | 0.2657 | 0.9359 | 0.058* | |
| C16 | 0.5553 (3) | 0.1825 (2) | 0.85987 (18) | 0.0500 (8) | |
| H16 | 0.5020 | 0.1764 | 0.8335 | 0.060* | |
| C17 | 0.6319 (3) | 0.1377 (2) | 0.83626 (18) | 0.0510 (9) | |
| C18 | 0.7096 (3) | 0.1491 (3) | 0.8774 (2) | 0.0616 (11) | |
| H18 | 0.7623 | 0.1202 | 0.8627 | 0.074* | |
| C19 | 0.7112 (3) | 0.2021 (3) | 0.93992 (19) | 0.0566 (10) | |
| H19 | 0.7646 | 0.2082 | 0.9663 | 0.068* | |
| C20 | 0.6326 (3) | 0.0806 (3) | 0.76548 (19) | 0.0646 (11) | |
| C21 | 0.5375 (4) | 0.0646 (6) | 0.7367 (4) | 0.110 (3) | 0.875 (14) |
| H21A | 0.5404 | 0.0291 | 0.6928 | 0.165* | 0.875 (14) |
| H21B | 0.5094 | 0.1216 | 0.7262 | 0.165* | 0.875 (14) |
| H21C | 0.5028 | 0.0331 | 0.7729 | 0.165* | 0.875 (14) |
| C22 | 0.6769 (8) | −0.0099 (5) | 0.7785 (4) | 0.122 (4) | 0.875 (14) |
| H22A | 0.6722 | −0.0460 | 0.7351 | 0.183* | 0.875 (14) |
| H22B | 0.6472 | −0.0401 | 0.8182 | 0.183* | 0.875 (14) |
| H22C | 0.7394 | −0.0010 | 0.7904 | 0.183* | 0.875 (14) |
| C23 | 0.6840 (7) | 0.1327 (6) | 0.7075 (3) | 0.125 (4) | 0.875 (14) |
| H23A | 0.7410 | 0.1519 | 0.7269 | 0.188* | 0.875 (14) |
| H23B | 0.6495 | 0.1846 | 0.6929 | 0.188* | 0.875 (14) |
| H23C | 0.6940 | 0.0945 | 0.6658 | 0.188* | 0.875 (14) |
| C21' | 0.565 (3) | 0.003 (3) | 0.765 (3) | 0.13 (2) | 0.125 (14) |
| H21D | 0.5711 | −0.0303 | 0.7199 | 0.188* | 0.125 (14) |
| H21E | 0.5047 | 0.0268 | 0.7680 | 0.188* | 0.125 (14) |
| H21F | 0.5762 | −0.0362 | 0.8054 | 0.188* | 0.125 (14) |
| C22' | 0.7261 (17) | 0.040 (4) | 0.752 (3) | 0.099 (17) | 0.125 (14) |
| H22D | 0.7216 | −0.0080 | 0.7169 | 0.149* | 0.125 (14) |
| H22E | 0.7490 | 0.0154 | 0.7976 | 0.149* | 0.125 (14) |
| H22F | 0.7664 | 0.0853 | 0.7347 | 0.149* | 0.125 (14) |
| C23' | 0.612 (4) | 0.140 (3) | 0.6995 (18) | 0.12 (2) | 0.125 (14) |
| H23D | 0.6390 | 0.1146 | 0.6565 | 0.174* | 0.125 (14) |
| H23E | 0.6365 | 0.1996 | 0.7076 | 0.174* | 0.125 (14) |
| H23F | 0.5479 | 0.1446 | 0.6929 | 0.174* | 0.125 (14) |
| N3 | 0.70020 (19) | 0.30431 (19) | 1.07917 (14) | 0.0433 (6) | |
| H3 | 0.734 (2) | 0.2580 (17) | 1.086 (2) | 0.052* | |
| N4 | 0.57632 (19) | 0.37297 (18) | 1.03858 (13) | 0.0417 (6) | |
| O1 | 0.8076 (2) | 0.1575 (2) | 1.11023 (13) | 0.0661 (9) | |
| H1A | 0.852 (2) | 0.159 (4) | 1.0831 (19) | 0.099* | |
| H1B | 0.824 (3) | 0.140 (4) | 1.1511 (13) | 0.099* | |
| O2 | 0.38586 (17) | 0.38586 (17) | 1.0000 | 0.0487 (8) | |
| H2A | 0.4347 (17) | 0.366 (3) | 1.014 (3) | 0.073* |
| C1 | 0.0486 (18) | 0.0470 (18) | 0.0354 (14) | −0.0038 (15) | −0.0049 (13) | 0.0075 (13) |
| C2 | 0.0490 (18) | 0.0405 (16) | 0.0341 (14) | −0.0017 (14) | −0.0012 (13) | 0.0037 (12) |
| C3 | 0.0475 (17) | 0.0393 (15) | 0.0307 (13) | −0.0020 (13) | −0.0058 (12) | 0.0041 (12) |
| C4 | 0.0453 (17) | 0.0405 (16) | 0.0340 (14) | −0.0022 (13) | −0.0008 (13) | 0.0001 (12) |
| C5 | 0.0510 (18) | 0.0420 (17) | 0.0342 (14) | −0.0069 (14) | 0.0002 (13) | 0.0027 (12) |
| C6 | 0.0514 (18) | 0.0490 (18) | 0.0355 (15) | −0.0111 (15) | −0.0054 (14) | 0.0018 (13) |
| N1 | 0.064 (2) | 0.069 (2) | 0.0451 (15) | −0.0063 (17) | −0.0158 (15) | −0.0029 (15) |
| C7 | 0.079 (3) | 0.081 (3) | 0.057 (2) | −0.006 (3) | −0.031 (2) | −0.004 (2) |
| C8 | 0.069 (3) | 0.086 (3) | 0.072 (3) | 0.010 (3) | −0.031 (2) | 0.002 (3) |
| C9 | 0.062 (2) | 0.064 (2) | 0.061 (2) | 0.005 (2) | −0.0200 (19) | −0.0030 (19) |
| N2 | 0.0604 (18) | 0.0486 (16) | 0.0425 (14) | −0.0071 (13) | −0.0021 (14) | −0.0057 (13) |
| C10 | 0.061 (2) | 0.0452 (18) | 0.0552 (19) | −0.0009 (16) | 0.0023 (18) | −0.0122 (17) |
| C11 | 0.060 (2) | 0.048 (2) | 0.062 (2) | 0.0087 (17) | −0.0095 (18) | −0.0069 (17) |
| C12 | 0.058 (2) | 0.0471 (18) | 0.0459 (17) | 0.0003 (16) | −0.0133 (16) | −0.0037 (15) |
| C13 | 0.0492 (17) | 0.0409 (16) | 0.0347 (14) | 0.0019 (14) | −0.0003 (13) | 0.0050 (13) |
| C14 | 0.0523 (18) | 0.0408 (16) | 0.0349 (14) | 0.0042 (14) | −0.0006 (14) | 0.0033 (13) |
| C15 | 0.0472 (19) | 0.0515 (19) | 0.0452 (16) | 0.0083 (15) | 0.0009 (15) | −0.0064 (15) |
| C16 | 0.058 (2) | 0.051 (2) | 0.0408 (16) | 0.0000 (17) | −0.0041 (16) | −0.0042 (15) |
| C17 | 0.073 (2) | 0.0489 (19) | 0.0317 (14) | 0.0097 (17) | 0.0009 (16) | −0.0007 (14) |
| C18 | 0.066 (2) | 0.074 (3) | 0.0446 (18) | 0.029 (2) | −0.0004 (18) | −0.0092 (18) |
| C19 | 0.056 (2) | 0.069 (2) | 0.0449 (18) | 0.0161 (19) | −0.0064 (16) | −0.0076 (17) |
| C20 | 0.090 (3) | 0.069 (3) | 0.0340 (17) | 0.016 (2) | −0.0018 (19) | −0.0102 (18) |
| C21 | 0.111 (5) | 0.131 (7) | 0.088 (5) | −0.003 (5) | −0.016 (4) | −0.068 (5) |
| C22 | 0.194 (10) | 0.100 (6) | 0.072 (4) | 0.064 (6) | −0.030 (5) | −0.038 (4) |
| C23 | 0.169 (9) | 0.162 (8) | 0.044 (3) | −0.053 (7) | 0.024 (4) | −0.020 (4) |
| C21' | 0.13 (3) | 0.12 (3) | 0.13 (3) | −0.006 (19) | −0.007 (19) | −0.019 (19) |
| C22' | 0.11 (2) | 0.10 (2) | 0.09 (2) | 0.019 (17) | −0.012 (17) | −0.026 (18) |
| C23' | 0.13 (3) | 0.11 (3) | 0.11 (2) | 0.003 (19) | −0.011 (19) | −0.014 (18) |
| N3 | 0.0484 (16) | 0.0451 (15) | 0.0363 (13) | 0.0073 (12) | −0.0044 (12) | 0.0032 (12) |
| N4 | 0.0514 (15) | 0.0418 (14) | 0.0319 (11) | 0.0064 (12) | −0.0039 (12) | −0.0008 (11) |
| O1 | 0.0715 (19) | 0.086 (2) | 0.0412 (12) | 0.0343 (17) | 0.0099 (13) | 0.0085 (14) |
| O2 | 0.0519 (12) | 0.0519 (12) | 0.0422 (17) | −0.0066 (17) | 0.0024 (11) | −0.0024 (11) |
| C1—C9 | 1.390 (5) | C17—C18 | 1.384 (6) |
| C1—C6 | 1.411 (5) | C17—C20 | 1.545 (5) |
| C1—C2 | 1.437 (4) | C18—C19 | 1.387 (5) |
| C2—N3 | 1.360 (4) | C18—H18 | 0.9300 |
| C2—C3 | 1.366 (4) | C19—H19 | 0.9300 |
| C3—N4 | 1.383 (4) | C20—C22 | 1.511 (6) |
| C3—C4 | 1.431 (5) | C20—C23 | 1.516 (6) |
| C4—C12 | 1.403 (5) | C20—C21 | 1.522 (6) |
| C4—C5 | 1.418 (4) | C20—C21' | 1.524 (10) |
| C5—N2 | 1.346 (4) | C20—C23' | 1.527 (10) |
| C5—C6 | 1.465 (5) | C20—C22' | 1.532 (10) |
| C6—N1 | 1.354 (4) | C21—H21A | 0.9600 |
| N1—C7 | 1.312 (6) | C21—H21B | 0.9600 |
| C7—C8 | 1.381 (7) | C21—H21C | 0.9600 |
| C7—H7 | 0.9300 | C22—H22A | 0.9600 |
| C8—C9 | 1.372 (6) | C22—H22B | 0.9600 |
| C8—H8 | 0.9300 | C22—H22C | 0.9600 |
| C9—H9 | 0.9300 | C23—H23A | 0.9600 |
| N2—C10 | 1.316 (5) | C23—H23B | 0.9600 |
| C10—C11 | 1.382 (5) | C23—H23C | 0.9600 |
| C10—H10 | 0.9300 | C21'—H21D | 0.9600 |
| C11—C12 | 1.367 (5) | C21'—H21E | 0.9600 |
| C11—H11 | 0.9300 | C21'—H21F | 0.9600 |
| C12—H12 | 0.9300 | C22'—H22D | 0.9600 |
| C13—N4 | 1.323 (4) | C22'—H22E | 0.9600 |
| C13—N3 | 1.359 (4) | C22'—H22F | 0.9600 |
| C13—C14 | 1.472 (4) | C23'—H23D | 0.9600 |
| C14—C19 | 1.383 (5) | C23'—H23E | 0.9600 |
| C14—C15 | 1.389 (5) | C23'—H23F | 0.9600 |
| C15—C16 | 1.381 (5) | N3—H3 | 0.86 (3) |
| C15—H15 | 0.9300 | O1—H1A | 0.83 (3) |
| C16—C17 | 1.383 (5) | O1—H1B | 0.83 (3) |
| C16—H16 | 0.9300 | O2—H2A | 0.82 (3) |
| C9—C1—C6 | 118.0 (3) | C19—C18—H18 | 119.0 |
| C9—C1—C2 | 125.5 (3) | C14—C19—C18 | 120.5 (4) |
| C6—C1—C2 | 116.4 (3) | C14—C19—H19 | 119.7 |
| N3—C2—C3 | 106.4 (3) | C18—C19—H19 | 119.7 |
| N3—C2—C1 | 130.4 (3) | C22—C20—C23 | 110.0 (5) |
| C3—C2—C1 | 123.2 (3) | C22—C20—C21 | 108.5 (5) |
| C2—C3—N4 | 110.1 (3) | C23—C20—C21 | 107.6 (5) |
| C2—C3—C4 | 121.7 (3) | C23—C20—C21' | 135 (2) |
| N4—C3—C4 | 128.2 (3) | C22—C20—C23' | 136.5 (19) |
| C12—C4—C5 | 117.4 (3) | C21'—C20—C23' | 107.3 (10) |
| C12—C4—C3 | 125.1 (3) | C21—C20—C22' | 136.1 (18) |
| C5—C4—C3 | 117.5 (3) | C21'—C20—C22' | 107.1 (9) |
| N2—C5—C4 | 121.7 (3) | C23'—C20—C22' | 106.7 (9) |
| N2—C5—C6 | 118.1 (3) | C22—C20—C17 | 110.9 (3) |
| C4—C5—C6 | 120.2 (3) | C23—C20—C17 | 108.1 (4) |
| N1—C6—C1 | 122.2 (3) | C21—C20—C17 | 111.7 (4) |
| N1—C6—C5 | 116.9 (3) | C21'—C20—C17 | 115 (2) |
| C1—C6—C5 | 121.0 (3) | C23'—C20—C17 | 110.1 (19) |
| C7—N1—C6 | 117.4 (4) | C22'—C20—C17 | 110.7 (17) |
| N1—C7—C8 | 124.8 (4) | C20—C21—H21A | 109.5 |
| N1—C7—H7 | 117.6 | C20—C21—H21B | 109.5 |
| C8—C7—H7 | 117.6 | C20—C21—H21C | 109.5 |
| C9—C8—C7 | 118.5 (4) | C20—C22—H22A | 109.5 |
| C9—C8—H8 | 120.8 | C20—C22—H22B | 109.5 |
| C7—C8—H8 | 120.8 | C20—C22—H22C | 109.5 |
| C8—C9—C1 | 119.2 (4) | C20—C23—H23A | 109.5 |
| C8—C9—H9 | 120.4 | C20—C23—H23B | 109.5 |
| C1—C9—H9 | 120.4 | C20—C23—H23C | 109.5 |
| C10—N2—C5 | 118.5 (3) | C20—C21'—H21D | 109.5 |
| N2—C10—C11 | 124.2 (3) | C20—C21'—H21E | 109.5 |
| N2—C10—H10 | 117.9 | H21D—C21'—H21E | 109.5 |
| C11—C10—H10 | 117.9 | C20—C21'—H21F | 109.5 |
| C12—C11—C10 | 118.4 (4) | H21D—C21'—H21F | 109.5 |
| C12—C11—H11 | 120.8 | H21E—C21'—H21F | 109.5 |
| C10—C11—H11 | 120.8 | C20—C22'—H22D | 109.5 |
| C11—C12—C4 | 119.7 (3) | C20—C22'—H22E | 109.5 |
| C11—C12—H12 | 120.1 | H22D—C22'—H22E | 109.5 |
| C4—C12—H12 | 120.1 | C20—C22'—H22F | 109.5 |
| N4—C13—N3 | 112.1 (3) | H22D—C22'—H22F | 109.5 |
| N4—C13—C14 | 125.0 (3) | H22E—C22'—H22F | 109.5 |
| N3—C13—C14 | 122.8 (3) | C20—C23'—H23D | 109.5 |
| C19—C14—C15 | 117.7 (3) | C20—C23'—H23E | 109.5 |
| C19—C14—C13 | 121.8 (3) | H23D—C23'—H23E | 109.5 |
| C15—C14—C13 | 120.4 (3) | C20—C23'—H23F | 109.5 |
| C16—C15—C14 | 121.3 (3) | H23D—C23'—H23F | 109.5 |
| C16—C15—H15 | 119.4 | H23E—C23'—H23F | 109.5 |
| C14—C15—H15 | 119.4 | C13—N3—C2 | 106.9 (3) |
| C15—C16—C17 | 121.5 (3) | C13—N3—H3 | 123 (3) |
| C15—C16—H16 | 119.3 | C2—N3—H3 | 128 (3) |
| C17—C16—H16 | 119.3 | C13—N4—C3 | 104.5 (3) |
| C16—C17—C18 | 117.0 (3) | C13—N4—H2A | 124.9 (13) |
| C16—C17—C20 | 121.9 (4) | C3—N4—H2A | 121.2 (13) |
| C18—C17—C20 | 121.1 (3) | H3—O1—H1A | 107 (4) |
| C17—C18—C19 | 122.1 (4) | H3—O1—H1B | 128 (4) |
| C17—C18—H18 | 119.0 | H1A—O1—H1B | 109 (4) |
| H··· | ||||
| O1—H1A···N1i | 0.83 (3) | 2.45 (3) | 3.193 (5) | 151 (5) |
| O1—H1A···N2i | 0.83 (3) | 2.19 (4) | 2.853 (4) | 137 (5) |
| O1—H1B···O2ii | 0.83 (3) | 2.07 (2) | 2.878 (3) | 168 (5) |
| O2—H2A···N4 | 0.82 (3) | 2.15 (2) | 2.914 (4) | 156 (5) |
| N3—H3···O1 | 0.86 (3) | 1.90 (3) | 2.754 (4) | 176 (4) |
| C12—H12···N4iii | 0.93 | 2.53 | 3.346 (4) | 147 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.83 (3) | 2.45 (3) | 3.193 (5) | 151 (5) |
| O1—H1 | 0.83 (3) | 2.19 (4) | 2.853 (4) | 137 (5) |
| O1—H1 | 0.83 (3) | 2.065 (16) | 2.878 (3) | 168 (5) |
| O2—H2 | 0.82 (3) | 2.15 (2) | 2.914 (4) | 156 (5) |
| N3—H3⋯O1 | 0.86 (3) | 1.90 (3) | 2.754 (4) | 176 (4) |
| C12—H12⋯N4iii | 0.93 | 2.53 | 3.346 (4) | 147 |
Symmetry codes: (i) ; (ii) ; (iii) .