Literature DB >> 21582774

2-(4-tert-Butyl-phen-yl)-1H-imidazo[4,5-f][1,10]phenanthroline sesquihydrate.

Chun-Yang Zheng1, Ting-Quan Sun.   

Abstract

In the title compound, C(23)H(20)N(4)·1.5H(2)O, the mean planes of the imidazo[4,5-f][1,10]phenanthroline system and the benzene ring make a dihedral angle of 21.76 (2)°. One water O atom lies on a twofold rotation axis. The organic mol-ecules and water mol-ecules are linked via N-H⋯O, O-H⋯N and O-H⋯O hydrogen bonds. Weak inter-molecular C-H⋯N hydrogen bonds and π-π stacking inter-actions between inversion-related phenanthroline rings complete the three-dimensional hydrogen-bonding network in the crystal structure. The stacking distance is short at 3.513 (2) Å and the perpendicular distance between the rings is 3.355 Å. The three methyl groups are disordered over two positions, with a site-occupancy ratio of 0.875 (14):0.125 (14).

Entities:  

Year:  2009        PMID: 21582774      PMCID: PMC2969225          DOI: 10.1107/S1600536809020261

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 1,10-phenanthroline derivatives as ligands, see: Cardinaels et al. (2005 ▶); Liu et al. (2005 ▶). For the crystal structures of 1,10-phenanthroline derivatives, see: Bian et al. (2002 ▶); Wu et al. (1998 ▶). For aromatic π–π stacking inter­actions, see: Janiak (2000 ▶).

Experimental

Crystal data

C23H20N4·1.5H2O M = 379.46 Tetragonal, a = 14.809 (4) Å c = 18.281 (6) Å V = 4009.1 (19) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.16 × 0.13 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 46858 measured reflections 2670 independent reflections 2508 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.167 S = 1.28 2670 reflections 304 parameters 53 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020261/si2177sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020261/si2177Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20N4·1.5H2ODx = 1.257 Mg m3
Mr = 379.46Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P43212Cell parameters from 5405 reflections
Hall symbol: P4nw 2abwθ = 2.2–22.5°
a = 14.809 (4) ŵ = 0.08 mm1
c = 18.281 (6) ÅT = 298 K
V = 4009.1 (19) Å3Block, yellow
Z = 80.16 × 0.13 × 0.10 mm
F(000) = 1608
Bruker SMART CCD area-detector diffractometer2508 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.054
graphiteθmax = 27.5°, θmin = 1.9°
φ and ω scansh = −19→19
46858 measured reflectionsk = −19→19
2670 independent reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.167H atoms treated by a mixture of independent and constrained refinement
S = 1.28w = 1/[σ2(Fo2) + (0.0765P)2 + 0.9688P] where P = (Fo2 + 2Fc2)/3
2670 reflections(Δ/σ)max < 0.001
304 parametersΔρmax = 0.30 e Å3
53 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.7310 (2)0.4019 (2)1.19064 (17)0.0436 (7)
C20.6832 (2)0.3733 (2)1.12626 (16)0.0412 (7)
C30.6074 (2)0.4156 (2)1.10102 (16)0.0392 (7)
C40.5709 (2)0.4934 (2)1.13671 (16)0.0399 (7)
C50.6151 (2)0.5242 (2)1.20079 (17)0.0424 (7)
C60.6959 (2)0.4778 (2)1.22760 (17)0.0453 (8)
N10.7345 (2)0.5111 (2)1.28912 (17)0.0593 (9)
C70.8061 (3)0.4692 (3)1.3142 (2)0.0723 (13)
H70.83250.49151.35670.087*
C80.8453 (3)0.3944 (4)1.2822 (3)0.0760 (14)
H80.89610.36761.30270.091*
C90.8074 (3)0.3605 (3)1.2194 (2)0.0623 (10)
H90.83250.31041.19650.075*
N20.5840 (2)0.5952 (2)1.23928 (16)0.0505 (7)
C100.5114 (3)0.6373 (3)1.2156 (2)0.0538 (9)
H100.49010.68601.24280.065*
C110.4647 (3)0.6138 (3)1.1531 (2)0.0569 (9)
H110.41390.64601.13850.068*
C120.4950 (2)0.5420 (2)1.11298 (19)0.0504 (8)
H120.46540.52541.07020.060*
C130.6348 (2)0.3069 (2)1.02710 (16)0.0416 (7)
C140.6341 (2)0.2461 (2)0.96339 (16)0.0426 (7)
C150.5563 (2)0.2359 (2)0.92178 (18)0.0480 (8)
H150.50380.26570.93590.058*
C160.5553 (3)0.1825 (2)0.85987 (18)0.0500 (8)
H160.50200.17640.83350.060*
C170.6319 (3)0.1377 (2)0.83626 (18)0.0510 (9)
C180.7096 (3)0.1491 (3)0.8774 (2)0.0616 (11)
H180.76230.12020.86270.074*
C190.7112 (3)0.2021 (3)0.93992 (19)0.0566 (10)
H190.76460.20820.96630.068*
C200.6326 (3)0.0806 (3)0.76548 (19)0.0646 (11)
C210.5375 (4)0.0646 (6)0.7367 (4)0.110 (3)0.875 (14)
H21A0.54040.02910.69280.165*0.875 (14)
H21B0.50940.12160.72620.165*0.875 (14)
H21C0.50280.03310.77290.165*0.875 (14)
C220.6769 (8)−0.0099 (5)0.7785 (4)0.122 (4)0.875 (14)
H22A0.6722−0.04600.73510.183*0.875 (14)
H22B0.6472−0.04010.81820.183*0.875 (14)
H22C0.7394−0.00100.79040.183*0.875 (14)
C230.6840 (7)0.1327 (6)0.7075 (3)0.125 (4)0.875 (14)
H23A0.74100.15190.72690.188*0.875 (14)
H23B0.64950.18460.69290.188*0.875 (14)
H23C0.69400.09450.66580.188*0.875 (14)
C21'0.565 (3)0.003 (3)0.765 (3)0.13 (2)0.125 (14)
H21D0.5711−0.03030.71990.188*0.125 (14)
H21E0.50470.02680.76800.188*0.125 (14)
H21F0.5762−0.03620.80540.188*0.125 (14)
C22'0.7261 (17)0.040 (4)0.752 (3)0.099 (17)0.125 (14)
H22D0.7216−0.00800.71690.149*0.125 (14)
H22E0.74900.01540.79760.149*0.125 (14)
H22F0.76640.08530.73470.149*0.125 (14)
C23'0.612 (4)0.140 (3)0.6995 (18)0.12 (2)0.125 (14)
H23D0.63900.11460.65650.174*0.125 (14)
H23E0.63650.19960.70760.174*0.125 (14)
H23F0.54790.14460.69290.174*0.125 (14)
N30.70020 (19)0.30431 (19)1.07917 (14)0.0433 (6)
H30.734 (2)0.2580 (17)1.086 (2)0.052*
N40.57632 (19)0.37297 (18)1.03858 (13)0.0417 (6)
O10.8076 (2)0.1575 (2)1.11023 (13)0.0661 (9)
H1A0.852 (2)0.159 (4)1.0831 (19)0.099*
H1B0.824 (3)0.140 (4)1.1511 (13)0.099*
O20.38586 (17)0.38586 (17)1.00000.0487 (8)
H2A0.4347 (17)0.366 (3)1.014 (3)0.073*
U11U22U33U12U13U23
C10.0486 (18)0.0470 (18)0.0354 (14)−0.0038 (15)−0.0049 (13)0.0075 (13)
C20.0490 (18)0.0405 (16)0.0341 (14)−0.0017 (14)−0.0012 (13)0.0037 (12)
C30.0475 (17)0.0393 (15)0.0307 (13)−0.0020 (13)−0.0058 (12)0.0041 (12)
C40.0453 (17)0.0405 (16)0.0340 (14)−0.0022 (13)−0.0008 (13)0.0001 (12)
C50.0510 (18)0.0420 (17)0.0342 (14)−0.0069 (14)0.0002 (13)0.0027 (12)
C60.0514 (18)0.0490 (18)0.0355 (15)−0.0111 (15)−0.0054 (14)0.0018 (13)
N10.064 (2)0.069 (2)0.0451 (15)−0.0063 (17)−0.0158 (15)−0.0029 (15)
C70.079 (3)0.081 (3)0.057 (2)−0.006 (3)−0.031 (2)−0.004 (2)
C80.069 (3)0.086 (3)0.072 (3)0.010 (3)−0.031 (2)0.002 (3)
C90.062 (2)0.064 (2)0.061 (2)0.005 (2)−0.0200 (19)−0.0030 (19)
N20.0604 (18)0.0486 (16)0.0425 (14)−0.0071 (13)−0.0021 (14)−0.0057 (13)
C100.061 (2)0.0452 (18)0.0552 (19)−0.0009 (16)0.0023 (18)−0.0122 (17)
C110.060 (2)0.048 (2)0.062 (2)0.0087 (17)−0.0095 (18)−0.0069 (17)
C120.058 (2)0.0471 (18)0.0459 (17)0.0003 (16)−0.0133 (16)−0.0037 (15)
C130.0492 (17)0.0409 (16)0.0347 (14)0.0019 (14)−0.0003 (13)0.0050 (13)
C140.0523 (18)0.0408 (16)0.0349 (14)0.0042 (14)−0.0006 (14)0.0033 (13)
C150.0472 (19)0.0515 (19)0.0452 (16)0.0083 (15)0.0009 (15)−0.0064 (15)
C160.058 (2)0.051 (2)0.0408 (16)0.0000 (17)−0.0041 (16)−0.0042 (15)
C170.073 (2)0.0489 (19)0.0317 (14)0.0097 (17)0.0009 (16)−0.0007 (14)
C180.066 (2)0.074 (3)0.0446 (18)0.029 (2)−0.0004 (18)−0.0092 (18)
C190.056 (2)0.069 (2)0.0449 (18)0.0161 (19)−0.0064 (16)−0.0076 (17)
C200.090 (3)0.069 (3)0.0340 (17)0.016 (2)−0.0018 (19)−0.0102 (18)
C210.111 (5)0.131 (7)0.088 (5)−0.003 (5)−0.016 (4)−0.068 (5)
C220.194 (10)0.100 (6)0.072 (4)0.064 (6)−0.030 (5)−0.038 (4)
C230.169 (9)0.162 (8)0.044 (3)−0.053 (7)0.024 (4)−0.020 (4)
C21'0.13 (3)0.12 (3)0.13 (3)−0.006 (19)−0.007 (19)−0.019 (19)
C22'0.11 (2)0.10 (2)0.09 (2)0.019 (17)−0.012 (17)−0.026 (18)
C23'0.13 (3)0.11 (3)0.11 (2)0.003 (19)−0.011 (19)−0.014 (18)
N30.0484 (16)0.0451 (15)0.0363 (13)0.0073 (12)−0.0044 (12)0.0032 (12)
N40.0514 (15)0.0418 (14)0.0319 (11)0.0064 (12)−0.0039 (12)−0.0008 (11)
O10.0715 (19)0.086 (2)0.0412 (12)0.0343 (17)0.0099 (13)0.0085 (14)
O20.0519 (12)0.0519 (12)0.0422 (17)−0.0066 (17)0.0024 (11)−0.0024 (11)
C1—C91.390 (5)C17—C181.384 (6)
C1—C61.411 (5)C17—C201.545 (5)
C1—C21.437 (4)C18—C191.387 (5)
C2—N31.360 (4)C18—H180.9300
C2—C31.366 (4)C19—H190.9300
C3—N41.383 (4)C20—C221.511 (6)
C3—C41.431 (5)C20—C231.516 (6)
C4—C121.403 (5)C20—C211.522 (6)
C4—C51.418 (4)C20—C21'1.524 (10)
C5—N21.346 (4)C20—C23'1.527 (10)
C5—C61.465 (5)C20—C22'1.532 (10)
C6—N11.354 (4)C21—H21A0.9600
N1—C71.312 (6)C21—H21B0.9600
C7—C81.381 (7)C21—H21C0.9600
C7—H70.9300C22—H22A0.9600
C8—C91.372 (6)C22—H22B0.9600
C8—H80.9300C22—H22C0.9600
C9—H90.9300C23—H23A0.9600
N2—C101.316 (5)C23—H23B0.9600
C10—C111.382 (5)C23—H23C0.9600
C10—H100.9300C21'—H21D0.9600
C11—C121.367 (5)C21'—H21E0.9600
C11—H110.9300C21'—H21F0.9600
C12—H120.9300C22'—H22D0.9600
C13—N41.323 (4)C22'—H22E0.9600
C13—N31.359 (4)C22'—H22F0.9600
C13—C141.472 (4)C23'—H23D0.9600
C14—C191.383 (5)C23'—H23E0.9600
C14—C151.389 (5)C23'—H23F0.9600
C15—C161.381 (5)N3—H30.86 (3)
C15—H150.9300O1—H1A0.83 (3)
C16—C171.383 (5)O1—H1B0.83 (3)
C16—H160.9300O2—H2A0.82 (3)
C9—C1—C6118.0 (3)C19—C18—H18119.0
C9—C1—C2125.5 (3)C14—C19—C18120.5 (4)
C6—C1—C2116.4 (3)C14—C19—H19119.7
N3—C2—C3106.4 (3)C18—C19—H19119.7
N3—C2—C1130.4 (3)C22—C20—C23110.0 (5)
C3—C2—C1123.2 (3)C22—C20—C21108.5 (5)
C2—C3—N4110.1 (3)C23—C20—C21107.6 (5)
C2—C3—C4121.7 (3)C23—C20—C21'135 (2)
N4—C3—C4128.2 (3)C22—C20—C23'136.5 (19)
C12—C4—C5117.4 (3)C21'—C20—C23'107.3 (10)
C12—C4—C3125.1 (3)C21—C20—C22'136.1 (18)
C5—C4—C3117.5 (3)C21'—C20—C22'107.1 (9)
N2—C5—C4121.7 (3)C23'—C20—C22'106.7 (9)
N2—C5—C6118.1 (3)C22—C20—C17110.9 (3)
C4—C5—C6120.2 (3)C23—C20—C17108.1 (4)
N1—C6—C1122.2 (3)C21—C20—C17111.7 (4)
N1—C6—C5116.9 (3)C21'—C20—C17115 (2)
C1—C6—C5121.0 (3)C23'—C20—C17110.1 (19)
C7—N1—C6117.4 (4)C22'—C20—C17110.7 (17)
N1—C7—C8124.8 (4)C20—C21—H21A109.5
N1—C7—H7117.6C20—C21—H21B109.5
C8—C7—H7117.6C20—C21—H21C109.5
C9—C8—C7118.5 (4)C20—C22—H22A109.5
C9—C8—H8120.8C20—C22—H22B109.5
C7—C8—H8120.8C20—C22—H22C109.5
C8—C9—C1119.2 (4)C20—C23—H23A109.5
C8—C9—H9120.4C20—C23—H23B109.5
C1—C9—H9120.4C20—C23—H23C109.5
C10—N2—C5118.5 (3)C20—C21'—H21D109.5
N2—C10—C11124.2 (3)C20—C21'—H21E109.5
N2—C10—H10117.9H21D—C21'—H21E109.5
C11—C10—H10117.9C20—C21'—H21F109.5
C12—C11—C10118.4 (4)H21D—C21'—H21F109.5
C12—C11—H11120.8H21E—C21'—H21F109.5
C10—C11—H11120.8C20—C22'—H22D109.5
C11—C12—C4119.7 (3)C20—C22'—H22E109.5
C11—C12—H12120.1H22D—C22'—H22E109.5
C4—C12—H12120.1C20—C22'—H22F109.5
N4—C13—N3112.1 (3)H22D—C22'—H22F109.5
N4—C13—C14125.0 (3)H22E—C22'—H22F109.5
N3—C13—C14122.8 (3)C20—C23'—H23D109.5
C19—C14—C15117.7 (3)C20—C23'—H23E109.5
C19—C14—C13121.8 (3)H23D—C23'—H23E109.5
C15—C14—C13120.4 (3)C20—C23'—H23F109.5
C16—C15—C14121.3 (3)H23D—C23'—H23F109.5
C16—C15—H15119.4H23E—C23'—H23F109.5
C14—C15—H15119.4C13—N3—C2106.9 (3)
C15—C16—C17121.5 (3)C13—N3—H3123 (3)
C15—C16—H16119.3C2—N3—H3128 (3)
C17—C16—H16119.3C13—N4—C3104.5 (3)
C16—C17—C18117.0 (3)C13—N4—H2A124.9 (13)
C16—C17—C20121.9 (4)C3—N4—H2A121.2 (13)
C18—C17—C20121.1 (3)H3—O1—H1A107 (4)
C17—C18—C19122.1 (4)H3—O1—H1B128 (4)
C17—C18—H18119.0H1A—O1—H1B109 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N1i0.83 (3)2.45 (3)3.193 (5)151 (5)
O1—H1A···N2i0.83 (3)2.19 (4)2.853 (4)137 (5)
O1—H1B···O2ii0.83 (3)2.07 (2)2.878 (3)168 (5)
O2—H2A···N40.82 (3)2.15 (2)2.914 (4)156 (5)
N3—H3···O10.86 (3)1.90 (3)2.754 (4)176 (4)
C12—H12···N4iii0.932.533.346 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N1i0.83 (3)2.45 (3)3.193 (5)151 (5)
O1—H1A⋯N2i0.83 (3)2.19 (4)2.853 (4)137 (5)
O1—H1B⋯O2ii0.83 (3)2.065 (16)2.878 (3)168 (5)
O2—H2A⋯N40.82 (3)2.15 (2)2.914 (4)156 (5)
N3—H3⋯O10.86 (3)1.90 (3)2.754 (4)176 (4)
C12—H12⋯N4iii0.932.533.346 (4)147

Symmetry codes: (i) ; (ii) ; (iii) .

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