Literature DB >> 21582767

3',6'-Bis(diethyl-amino)-2-phenyl-spiro[isoindoline-1,9'-xanthen]-3-one.

Wu-Jian Deng, Di Sun, Bing-Yuan Su, Shu-Ping Wang, Hong Zheng.   

Abstract

The title compound, C(34)H(35)O(2)N(3), was synthesized by the reaction of 2-[3,6-bis-(diethyl-amino)-9H-xanthen-9-yl]benzoyl chloride with aniline. In the mol-ecular structure, the dihedral angles between the isoindoline and xanthene planes and between the isoindoline and benzene planes are 86.9 (3) and 47.0 (2)°, respectively. The mol-ecular packing in the crystal structure is stabilized by weak C-H⋯O hydrogen bonding.

Entities:  

Year:  2009        PMID: 21582767      PMCID: PMC2969317          DOI: 10.1107/S1600536809020248

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of rhodamine-based dyes as probes and sensors, see: Zheng et al. (2008 ▶); Wu et al. (2007 ▶). For a related structure, see: Kwon et al. (2005 ▶).

Experimental

Crystal data

C34H35N3O2 M = 517.65 Monoclinic, a = 12.0213 (5) Å b = 12.6315 (4) Å c = 18.9700 (7) Å β = 107.456 (4)° V = 2747.88 (18) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire3 (Gemini Ultra Mo) detector Absorption correction: none 29794 measured reflections 5403 independent reflections 4396 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.103 S = 1.06 5403 reflections 352 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809020248/xu2519sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020248/xu2519Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C34H35N3O2F(000) = 1104
Mr = 517.65Dx = 1.251 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 16600 reflections
a = 12.0213 (5) Åθ = 2.4–32.7°
b = 12.6315 (4) ŵ = 0.08 mm1
c = 18.9700 (7) ÅT = 173 K
β = 107.456 (4)°Block, colourless
V = 2747.88 (18) Å30.30 × 0.20 × 0.20 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with a Sapphire3 (Gemini ultra Mo) detector4396 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
graphiteθmax = 26.0°, θmin = 2.4°
Detector resolution: 16.1903 pixels mm-1h = −14→14
φ and ω scansk = −15→15
29794 measured reflectionsl = −21→23
5403 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0572P)2 + 0.4462P] where P = (Fo2 + 2Fc2)/3
5403 reflections(Δ/σ)max = 0.006
352 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.71114 (11)0.71818 (10)0.15020 (7)0.0228 (3)
C20.82352 (12)0.71273 (11)0.14514 (8)0.0267 (3)
H2A0.85580.77220.12770.032*
C30.88993 (11)0.62080 (11)0.16541 (7)0.0247 (3)
C40.83537 (12)0.53371 (10)0.18815 (7)0.0240 (3)
H4A0.87670.46900.20110.029*
C50.72318 (11)0.54138 (10)0.19186 (7)0.0219 (3)
H5A0.68930.48150.20770.026*
C60.65727 (11)0.63372 (10)0.17327 (7)0.0192 (3)
C70.53398 (11)0.64059 (10)0.17788 (7)0.0192 (3)
C80.48969 (11)0.75350 (9)0.16449 (7)0.0192 (3)
C90.38198 (11)0.78341 (10)0.17203 (7)0.0212 (3)
H9A0.33810.73210.18900.025*
C100.33646 (11)0.88340 (10)0.15613 (7)0.0225 (3)
H10A0.26240.89950.16170.027*
C110.39947 (11)0.96252 (10)0.13143 (7)0.0219 (3)
C120.50750 (12)0.93349 (10)0.12374 (7)0.0235 (3)
H12A0.55240.98440.10730.028*
C130.54985 (11)0.83143 (10)0.13973 (7)0.0214 (3)
C140.44953 (11)0.56635 (10)0.12430 (7)0.0214 (3)
C150.41783 (12)0.56501 (11)0.04796 (8)0.0275 (3)
H15A0.45070.61370.02160.033*
C160.33642 (13)0.49019 (12)0.01089 (8)0.0340 (4)
H16A0.31430.4871−0.04150.041*
C170.28681 (13)0.41981 (12)0.04928 (9)0.0349 (4)
H17A0.23070.36980.02280.042*
C180.31836 (12)0.42201 (11)0.12532 (9)0.0308 (3)
H18A0.28470.37430.15190.037*
C190.40063 (11)0.49595 (10)0.16190 (8)0.0235 (3)
C200.45099 (12)0.51313 (10)0.24234 (8)0.0237 (3)
C210.60912 (11)0.62493 (10)0.31955 (7)0.0219 (3)
C220.66767 (14)0.54632 (12)0.36746 (8)0.0341 (3)
H22A0.65360.47390.35420.041*
C230.74656 (14)0.57334 (13)0.43449 (8)0.0393 (4)
H23A0.78520.51920.46760.047*
C240.76971 (14)0.67813 (13)0.45384 (8)0.0385 (4)
H24A0.82400.69650.49990.046*
C250.71330 (15)0.75539 (13)0.40563 (9)0.0439 (4)
H25A0.72970.82770.41820.053*
C260.63245 (14)0.72939 (11)0.33859 (8)0.0360 (4)
H26A0.59330.78380.30590.043*
C270.41811 (13)1.14312 (11)0.08587 (8)0.0327 (3)
H27A0.36091.19470.05630.039*
H27B0.45591.10810.05230.039*
C280.51015 (15)1.20246 (12)0.14500 (10)0.0418 (4)
H28A0.54871.25410.12160.063*
H28B0.56811.15220.17400.063*
H28C0.47321.23940.17760.063*
C290.25151 (14)1.09900 (12)0.13220 (9)0.0372 (4)
H29A0.26111.17440.14700.045*
H29B0.24311.05790.17470.045*
C300.14156 (16)1.08697 (19)0.06812 (11)0.0630 (6)
H30A0.07471.11240.08270.094*
H30B0.13021.01220.05400.094*
H30C0.14851.12850.02600.094*
C311.06594 (13)0.70793 (12)0.15060 (10)0.0379 (4)
H31A1.14790.70480.18250.045*
H31B1.03010.77200.16460.045*
C321.06523 (17)0.71910 (15)0.07113 (10)0.0540 (5)
H32A1.10850.78290.06590.081*
H32B0.98460.72480.03910.081*
H32C1.10220.65690.05690.081*
C331.06374 (13)0.51390 (12)0.17186 (8)0.0319 (3)
H33A1.05130.47450.21400.038*
H33B1.14850.52660.18310.038*
C341.02314 (13)0.44583 (12)0.10308 (9)0.0364 (4)
H34A1.06640.37890.11130.055*
H34B1.03720.48330.06130.055*
H34C0.93960.43130.09220.055*
N10.35614 (10)1.06343 (9)0.11526 (7)0.0306 (3)
N21.00455 (10)0.61526 (10)0.16542 (7)0.0332 (3)
N30.52732 (9)0.59642 (8)0.25021 (6)0.0205 (2)
O10.65733 (8)0.81453 (7)0.12950 (6)0.0307 (2)
O20.42961 (9)0.46357 (8)0.29198 (6)0.0345 (3)
U11U22U33U12U13U23
C10.0214 (7)0.0196 (6)0.0281 (7)0.0008 (5)0.0084 (6)−0.0007 (5)
C20.0222 (7)0.0232 (7)0.0372 (8)−0.0038 (5)0.0128 (6)−0.0019 (6)
C30.0176 (7)0.0295 (7)0.0257 (7)0.0001 (5)0.0045 (5)−0.0075 (6)
C40.0218 (7)0.0243 (7)0.0244 (7)0.0057 (5)0.0048 (5)−0.0009 (5)
C50.0229 (7)0.0223 (7)0.0203 (6)−0.0001 (5)0.0064 (5)0.0006 (5)
C60.0169 (6)0.0216 (6)0.0188 (6)−0.0003 (5)0.0048 (5)−0.0016 (5)
C70.0177 (6)0.0211 (6)0.0187 (6)−0.0007 (5)0.0053 (5)0.0013 (5)
C80.0180 (6)0.0198 (6)0.0188 (6)−0.0001 (5)0.0040 (5)−0.0001 (5)
C90.0185 (7)0.0229 (7)0.0221 (6)−0.0016 (5)0.0060 (5)0.0013 (5)
C100.0169 (6)0.0252 (7)0.0241 (6)0.0025 (5)0.0041 (5)−0.0009 (5)
C110.0217 (7)0.0204 (6)0.0207 (6)0.0029 (5)0.0019 (5)0.0002 (5)
C120.0231 (7)0.0206 (7)0.0275 (7)−0.0015 (5)0.0085 (6)0.0036 (5)
C130.0180 (7)0.0229 (7)0.0232 (6)0.0007 (5)0.0062 (5)0.0001 (5)
C140.0153 (6)0.0205 (6)0.0273 (7)0.0032 (5)0.0049 (5)−0.0040 (5)
C150.0227 (7)0.0306 (7)0.0285 (7)0.0033 (6)0.0068 (6)−0.0008 (6)
C160.0259 (8)0.0414 (9)0.0286 (7)0.0081 (6)−0.0012 (6)−0.0116 (6)
C170.0207 (7)0.0287 (8)0.0492 (9)−0.0006 (6)0.0015 (7)−0.0164 (7)
C180.0219 (7)0.0220 (7)0.0483 (9)0.0001 (6)0.0100 (6)−0.0046 (6)
C190.0181 (7)0.0194 (6)0.0334 (7)0.0035 (5)0.0083 (6)−0.0026 (5)
C200.0217 (7)0.0186 (6)0.0341 (7)0.0024 (5)0.0132 (6)0.0022 (5)
C210.0197 (7)0.0269 (7)0.0197 (6)0.0037 (5)0.0071 (5)−0.0011 (5)
C220.0398 (9)0.0287 (8)0.0311 (8)0.0039 (7)0.0065 (7)0.0052 (6)
C230.0395 (9)0.0459 (10)0.0277 (8)0.0082 (7)0.0029 (7)0.0120 (7)
C240.0360 (9)0.0513 (10)0.0233 (7)0.0056 (7)0.0014 (6)−0.0050 (7)
C250.0471 (10)0.0341 (9)0.0377 (9)0.0041 (7)−0.0069 (8)−0.0114 (7)
C260.0410 (9)0.0259 (7)0.0318 (8)0.0069 (6)−0.0033 (7)0.0000 (6)
C270.0348 (8)0.0229 (7)0.0407 (8)0.0070 (6)0.0118 (7)0.0098 (6)
C280.0411 (10)0.0309 (8)0.0529 (10)0.0000 (7)0.0131 (8)0.0054 (7)
C290.0386 (9)0.0259 (7)0.0519 (10)0.0125 (7)0.0209 (8)0.0079 (7)
C300.0363 (10)0.0903 (16)0.0623 (12)0.0247 (10)0.0148 (9)0.0299 (11)
C310.0181 (7)0.0366 (9)0.0593 (11)−0.0060 (6)0.0123 (7)−0.0130 (7)
C320.0554 (12)0.0458 (10)0.0569 (11)−0.0162 (9)0.0110 (9)0.0081 (9)
C330.0193 (7)0.0420 (9)0.0339 (8)0.0091 (6)0.0075 (6)0.0021 (6)
C340.0303 (8)0.0384 (8)0.0430 (9)0.0028 (7)0.0149 (7)−0.0043 (7)
N10.0279 (7)0.0227 (6)0.0424 (7)0.0074 (5)0.0123 (6)0.0073 (5)
N20.0184 (6)0.0320 (7)0.0504 (8)0.0006 (5)0.0123 (6)−0.0056 (6)
N30.0212 (6)0.0196 (5)0.0215 (5)−0.0002 (4)0.0075 (4)0.0022 (4)
O10.0242 (5)0.0210 (5)0.0540 (7)0.0036 (4)0.0225 (5)0.0089 (4)
O20.0385 (6)0.0315 (6)0.0391 (6)−0.0055 (5)0.0202 (5)0.0072 (4)
C1—O11.3789 (15)C21—C221.3870 (19)
C1—C21.3846 (19)C21—N31.4320 (16)
C1—C61.3854 (18)C22—C231.382 (2)
C2—C31.3961 (19)C22—H22A0.9500
C2—H2A0.9500C23—C241.380 (2)
C3—N21.3796 (18)C23—H23A0.9500
C3—C41.413 (2)C24—C251.370 (2)
C4—C51.3749 (19)C24—H24A0.9500
C4—H4A0.9500C25—C261.389 (2)
C5—C61.3945 (18)C25—H25A0.9500
C5—H5A0.9500C26—H26A0.9500
C6—C71.5131 (18)C27—N11.4588 (19)
C7—N31.5054 (16)C27—C281.516 (2)
C7—C81.5170 (17)C27—H27A0.9900
C7—C141.5245 (17)C27—H27B0.9900
C8—C131.3842 (18)C28—H28A0.9800
C8—C91.3967 (18)C28—H28B0.9800
C9—C101.3735 (18)C28—H28C0.9800
C9—H9A0.9500C29—N11.4593 (19)
C10—C111.4161 (19)C29—C301.511 (3)
C10—H10A0.9500C29—H29A0.9900
C11—N11.3763 (17)C29—H29B0.9900
C11—C121.3985 (19)C30—H30A0.9800
C12—C131.3858 (18)C30—H30B0.9800
C12—H12A0.9500C30—H30C0.9800
C13—O11.3795 (16)C31—N21.4555 (19)
C14—C191.3773 (19)C31—C321.512 (3)
C14—C151.3826 (19)C31—H31A0.9900
C15—C161.390 (2)C31—H31B0.9900
C15—H15A0.9500C32—H32A0.9800
C16—C171.392 (2)C32—H32B0.9800
C16—H16A0.9500C32—H32C0.9800
C17—C181.377 (2)C33—N21.4520 (18)
C17—H17A0.9500C33—C341.516 (2)
C18—C191.3858 (19)C33—H33A0.9900
C18—H18A0.9500C33—H33B0.9900
C19—C201.4790 (19)C34—H34A0.9800
C20—O21.2207 (16)C34—H34B0.9800
C20—N31.3744 (17)C34—H34C0.9800
C21—C261.3744 (19)
O1—C1—C2114.10 (11)C24—C23—H23A119.7
O1—C1—C6123.08 (12)C22—C23—H23A119.7
C2—C1—C6122.81 (12)C25—C24—C23119.08 (14)
C1—C2—C3120.76 (12)C25—C24—H24A120.5
C1—C2—H2A119.6C23—C24—H24A120.5
C3—C2—H2A119.6C24—C25—C26120.88 (15)
N2—C3—C2122.06 (13)C24—C25—H25A119.6
N2—C3—C4121.03 (12)C26—C25—H25A119.6
C2—C3—C4116.88 (12)C21—C26—C25119.95 (13)
C5—C4—C3120.87 (12)C21—C26—H26A120.0
C5—C4—H4A119.6C25—C26—H26A120.0
C3—C4—H4A119.6N1—C27—C28113.66 (13)
C4—C5—C6122.52 (12)N1—C27—H27A108.8
C4—C5—H5A118.7C28—C27—H27A108.8
C6—C5—H5A118.7N1—C27—H27B108.8
C1—C6—C5116.11 (12)C28—C27—H27B108.8
C1—C6—C7122.20 (11)H27A—C27—H27B107.7
C5—C6—C7121.69 (11)C27—C28—H28A109.5
N3—C7—C6110.63 (10)C27—C28—H28B109.5
N3—C7—C8112.90 (10)H28A—C28—H28B109.5
C6—C7—C8110.18 (10)C27—C28—H28C109.5
N3—C7—C1499.96 (10)H28A—C28—H28C109.5
C6—C7—C14113.21 (10)H28B—C28—H28C109.5
C8—C7—C14109.67 (10)N1—C29—C30113.30 (15)
C13—C8—C9115.92 (11)N1—C29—H29A108.9
C13—C8—C7122.18 (12)C30—C29—H29A108.9
C9—C8—C7121.79 (11)N1—C29—H29B108.9
C10—C9—C8123.15 (12)C30—C29—H29B108.9
C10—C9—H9A118.4H29A—C29—H29B107.7
C8—C9—H9A118.4C29—C30—H30A109.5
C9—C10—C11120.28 (12)C29—C30—H30B109.5
C9—C10—H10A119.9H30A—C30—H30B109.5
C11—C10—H10A119.9C29—C30—H30C109.5
N1—C11—C12121.39 (12)H30A—C30—H30C109.5
N1—C11—C10121.54 (12)H30B—C30—H30C109.5
C12—C11—C10117.07 (11)N2—C31—C32114.59 (13)
C13—C12—C11120.85 (12)N2—C31—H31A108.6
C13—C12—H12A119.6C32—C31—H31A108.6
C11—C12—H12A119.6N2—C31—H31B108.6
O1—C13—C8122.99 (11)C32—C31—H31B108.6
O1—C13—C12114.28 (11)H31A—C31—H31B107.6
C8—C13—C12122.73 (12)C31—C32—H32A109.5
C19—C14—C15120.55 (12)C31—C32—H32B109.5
C19—C14—C7110.74 (11)H32A—C32—H32B109.5
C15—C14—C7128.69 (12)C31—C32—H32C109.5
C14—C15—C16117.98 (14)H32A—C32—H32C109.5
C14—C15—H15A121.0H32B—C32—H32C109.5
C16—C15—H15A121.0N2—C33—C34113.87 (12)
C15—C16—C17121.11 (14)N2—C33—H33A108.8
C15—C16—H16A119.4C34—C33—H33A108.8
C17—C16—H16A119.4N2—C33—H33B108.8
C18—C17—C16120.57 (13)C34—C33—H33B108.8
C18—C17—H17A119.7H33A—C33—H33B107.7
C16—C17—H17A119.7C33—C34—H34A109.5
C17—C18—C19117.97 (14)C33—C34—H34B109.5
C17—C18—H18A121.0H34A—C34—H34B109.5
C19—C18—H18A121.0C33—C34—H34C109.5
C14—C19—C18121.81 (13)H34A—C34—H34C109.5
C14—C19—C20109.47 (11)H34B—C34—H34C109.5
C18—C19—C20128.71 (13)C11—N1—C27121.45 (12)
O2—C20—N3126.65 (13)C11—N1—C29121.98 (12)
O2—C20—C19127.22 (13)C27—N1—C29116.38 (11)
N3—C20—C19106.13 (11)C3—N2—C33120.59 (12)
C26—C21—C22119.45 (13)C3—N2—C31121.56 (12)
C26—C21—N3120.83 (12)C33—N2—C31117.48 (12)
C22—C21—N3119.70 (12)C20—N3—C21122.99 (11)
C23—C22—C21119.97 (14)C20—N3—C7113.63 (10)
C23—C22—H22A120.0C21—N3—C7122.30 (10)
C21—C22—H22A120.0C1—O1—C13118.40 (10)
C24—C23—C22120.65 (14)
D—H···AD—HH···AD···AD—H···A
C31—H31B···O2i0.992.563.4032 (19)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C31—H31B⋯O2i0.992.563.4032 (19)144

Symmetry code: (i) .

  4 in total

1.  A highly selective fluorescent chemosensor for Pb2+.

Authors:  Ji Young Kwon; Yun Jung Jang; Yoon Ju Lee; Kwan Mook Kim; Mi Sook Seo; Wonwoo Nam; Juyoung Yoon
Journal:  J Am Chem Soc       Date:  2005-07-20       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Highly sensitive fluorescent probe for selective detection of Hg2+ in DMF aqueous media.

Authors:  Dayu Wu; Wei Huang; Chunying Duan; Zhihua Lin; Qingjin Meng
Journal:  Inorg Chem       Date:  2007-02-01       Impact factor: 5.165

4.  Fluorogenic and chromogenic rhodamine spirolactam based probe for nitric oxide by spiro ring opening reaction.

Authors:  Hong Zheng; Gui-Qin Shang; Shi-Yao Yang; Xia Gao; Jin-Gou Xu
Journal:  Org Lett       Date:  2008-05-17       Impact factor: 6.005

  4 in total
  3 in total

1.  2-[(5-Chloro-2-hy-droxy-benzyl-idene)amino]-3',6'-bis-(diethyl-amino)-spiro-[isoindoline-1,9'-xanthen]-3-one.

Authors:  Zhi-Hong Xu; Wei-Yun Guo; Bo-Wei Su; Xu-Ke Shen; Feng-Ling Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

2.  3',6'-Bis(ethyl-amino)-2',7'-dimethyl-2-{[2-[(E)-3,4-methyl-enedioxy-benzyl-idene-amino]eth-yl}spiro-[isoindoline-1,9'-xanthen]-3-one.

Authors:  Zhi-Hong Xu; Hong-Sheng Wang; Lian-Ting Tao; Hong-Wei Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15

3.  2-[(2,4-Dihydroxy-benzyl-idene)amino]-3',6'-bis-(ethyl-amino)spiro-[isoindoline-1,9'-xanthen]-3-one.

Authors:  Zhi-Hong Xu; Yan-Ling Zhang; Yan-Ru Zhao; Feng-Ling Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29
  3 in total

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