| Literature DB >> 21582762 |
Xing-Cheng Zhu1, Qi-Long Zhang, Yun-Qian Zhang, Bi-Xue Zhu.
Abstract
In the title compound, C(8)H(12)N(4)OS, an intra-molecular N-H⋯O hydrogen bond links the imine N atom to the oxo O atom. In the crystal, mol-ecules are linked by inter-molecular N-H⋯O and N-H⋯S hydrogen bonds, forming a two-dimensional framework.Entities:
Year: 2009 PMID: 21582762 PMCID: PMC2969399 DOI: 10.1107/S1600536809019850
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H12N4OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9199 reflections |
| θ = 2.5–26.0° | |
| µ = 0.28 mm−1 | |
| β = 99.560 (14)° | Prism, yellow |
| 0.26 × 0.23 × 0.18 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2071 independent reflections |
| Radiation source: fine-focus sealed tube | 1688 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 9199 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2071 reflections | (Δ/σ)max < 0.001 |
| 130 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6978 (2) | 0.4476 (2) | 0.6177 (2) | 0.0581 (6) | |
| H1A | 0.6385 | 0.4804 | 0.6695 | 0.087* | |
| H1B | 0.7230 | 0.5246 | 0.5697 | 0.087* | |
| H1C | 0.7717 | 0.4092 | 0.6702 | 0.087* | |
| C2 | 0.63580 (17) | 0.3365 (2) | 0.53014 (16) | 0.0413 (4) | |
| C3 | 0.51805 (18) | 0.2824 (2) | 0.53712 (17) | 0.0474 (5) | |
| H3 | 0.4781 | 0.3133 | 0.6027 | 0.057* | |
| C4 | 0.45166 (17) | 0.1828 (2) | 0.45229 (17) | 0.0437 (4) | |
| C5 | 0.31956 (19) | 0.1390 (3) | 0.4704 (2) | 0.0598 (6) | |
| H5A | 0.2574 | 0.1966 | 0.4191 | 0.090* | |
| H5B | 0.3113 | 0.1500 | 0.5573 | 0.090* | |
| H5C | 0.3058 | 0.0423 | 0.4464 | 0.090* | |
| C6 | 0.9660 (2) | 0.1873 (2) | 0.5572 (2) | 0.0579 (5) | |
| H6A | 1.0551 | 0.1644 | 0.5677 | 0.087* | |
| H6B | 0.9162 | 0.1048 | 0.5318 | 0.087* | |
| H6C | 0.9457 | 0.2212 | 0.6355 | 0.087* | |
| C7 | 0.93642 (17) | 0.29676 (19) | 0.45994 (16) | 0.0420 (4) | |
| C8 | 0.81958 (17) | 0.45095 (18) | 0.33090 (15) | 0.0377 (4) | |
| N1 | 0.70361 (13) | 0.28695 (16) | 0.44362 (13) | 0.0430 (4) | |
| H1 | 0.6761 | 0.2136 | 0.4010 | 0.052* | |
| N2 | 0.81498 (13) | 0.34888 (15) | 0.42069 (13) | 0.0381 (3) | |
| N3 | 0.94393 (14) | 0.45391 (16) | 0.32250 (14) | 0.0445 (4) | |
| H3A | 0.9753 | 0.5092 | 0.2723 | 0.053* | |
| N4 | 1.01765 (14) | 0.35996 (17) | 0.40183 (15) | 0.0483 (4) | |
| O1 | 0.49708 (12) | 0.13376 (15) | 0.36199 (13) | 0.0536 (4) | |
| S1 | 0.69902 (5) | 0.54628 (5) | 0.25545 (4) | 0.04948 (19) |
| C1 | 0.0537 (13) | 0.0681 (14) | 0.0536 (11) | −0.0014 (10) | 0.0118 (10) | −0.0165 (10) |
| C2 | 0.0402 (10) | 0.0460 (10) | 0.0389 (9) | 0.0044 (8) | 0.0103 (8) | 0.0013 (7) |
| C3 | 0.0418 (11) | 0.0602 (12) | 0.0439 (10) | 0.0030 (9) | 0.0180 (8) | −0.0033 (9) |
| C4 | 0.0370 (10) | 0.0495 (11) | 0.0474 (10) | 0.0029 (8) | 0.0151 (8) | 0.0062 (8) |
| C5 | 0.0426 (12) | 0.0754 (15) | 0.0653 (13) | −0.0085 (10) | 0.0198 (10) | 0.0014 (11) |
| C6 | 0.0566 (13) | 0.0560 (12) | 0.0597 (12) | 0.0071 (10) | 0.0055 (10) | 0.0110 (10) |
| C7 | 0.0369 (10) | 0.0440 (10) | 0.0447 (9) | 0.0003 (8) | 0.0055 (8) | −0.0035 (8) |
| C8 | 0.0379 (10) | 0.0402 (9) | 0.0360 (8) | −0.0018 (7) | 0.0089 (7) | −0.0040 (7) |
| N1 | 0.0388 (9) | 0.0446 (9) | 0.0490 (8) | −0.0086 (7) | 0.0175 (7) | −0.0082 (7) |
| N2 | 0.0316 (8) | 0.0411 (8) | 0.0427 (8) | −0.0030 (6) | 0.0092 (6) | −0.0012 (6) |
| N3 | 0.0359 (9) | 0.0500 (9) | 0.0493 (9) | −0.0028 (7) | 0.0116 (7) | 0.0062 (7) |
| N4 | 0.0339 (8) | 0.0570 (10) | 0.0536 (9) | 0.0008 (7) | 0.0059 (7) | 0.0037 (7) |
| O1 | 0.0461 (8) | 0.0604 (9) | 0.0591 (8) | −0.0084 (6) | 0.0223 (7) | −0.0143 (7) |
| S1 | 0.0430 (3) | 0.0588 (3) | 0.0476 (3) | 0.0104 (2) | 0.0103 (2) | 0.0053 (2) |
| C1—C2 | 1.495 (3) | C6—C7 | 1.474 (3) |
| C1—H1A | 0.9600 | C6—H6A | 0.9600 |
| C1—H1B | 0.9600 | C6—H6B | 0.9600 |
| C1—H1C | 0.9600 | C6—H6C | 0.9600 |
| C2—N1 | 1.353 (2) | C7—N4 | 1.295 (2) |
| C2—C3 | 1.366 (3) | C7—N2 | 1.381 (2) |
| C3—C4 | 1.420 (3) | C8—N3 | 1.339 (2) |
| C3—H3 | 0.9300 | C8—N2 | 1.377 (2) |
| C4—O1 | 1.245 (2) | C8—S1 | 1.6664 (19) |
| C4—C5 | 1.507 (3) | N1—N2 | 1.380 (2) |
| C5—H5A | 0.9600 | N1—H1 | 0.8600 |
| C5—H5B | 0.9600 | N3—N4 | 1.386 (2) |
| C5—H5C | 0.9600 | N3—H3A | 0.8600 |
| C2—C1—H1A | 109.5 | C7—C6—H6B | 109.5 |
| C2—C1—H1B | 109.5 | H6A—C6—H6B | 109.5 |
| H1A—C1—H1B | 109.5 | C7—C6—H6C | 109.5 |
| C2—C1—H1C | 109.5 | H6A—C6—H6C | 109.5 |
| H1A—C1—H1C | 109.5 | H6B—C6—H6C | 109.5 |
| H1B—C1—H1C | 109.5 | N4—C7—N2 | 110.40 (16) |
| N1—C2—C3 | 120.20 (17) | N4—C7—C6 | 126.26 (17) |
| N1—C2—C1 | 116.86 (17) | N2—C7—C6 | 123.32 (16) |
| C3—C2—C1 | 122.92 (17) | N3—C8—N2 | 102.27 (15) |
| C2—C3—C4 | 125.30 (16) | N3—C8—S1 | 129.95 (14) |
| C2—C3—H3 | 117.4 | N2—C8—S1 | 127.77 (14) |
| C4—C3—H3 | 117.4 | C2—N1—N2 | 122.95 (15) |
| O1—C4—C3 | 122.48 (17) | C2—N1—H1 | 118.5 |
| O1—C4—C5 | 119.12 (18) | N2—N1—H1 | 118.5 |
| C3—C4—C5 | 118.38 (17) | C8—N2—N1 | 123.94 (14) |
| C4—C5—H5A | 109.5 | C8—N2—C7 | 109.16 (14) |
| C4—C5—H5B | 109.5 | N1—N2—C7 | 125.19 (15) |
| H5A—C5—H5B | 109.5 | C8—N3—N4 | 114.05 (15) |
| C4—C5—H5C | 109.5 | C8—N3—H3A | 123.0 |
| H5A—C5—H5C | 109.5 | N4—N3—H3A | 123.0 |
| H5B—C5—H5C | 109.5 | C7—N4—N3 | 104.12 (15) |
| C7—C6—H6A | 109.5 | ||
| N1—C2—C3—C4 | −5.7 (3) | C2—N1—N2—C7 | 105.0 (2) |
| C1—C2—C3—C4 | 176.25 (19) | N4—C7—N2—C8 | 0.6 (2) |
| C2—C3—C4—O1 | 0.7 (3) | C6—C7—N2—C8 | 179.02 (17) |
| C2—C3—C4—C5 | −177.3 (2) | N4—C7—N2—N1 | 166.12 (16) |
| C3—C2—N1—N2 | 171.33 (16) | C6—C7—N2—N1 | −15.5 (3) |
| C1—C2—N1—N2 | −10.5 (3) | N2—C8—N3—N4 | −0.11 (19) |
| N3—C8—N2—N1 | −166.02 (14) | S1—C8—N3—N4 | 179.01 (13) |
| S1—C8—N2—N1 | 14.8 (2) | N2—C7—N4—N3 | −0.62 (19) |
| N3—C8—N2—C7 | −0.27 (18) | C6—C7—N4—N3 | −178.99 (18) |
| S1—C8—N2—C7 | −179.42 (13) | C8—N3—N4—C7 | 0.5 (2) |
| C2—N1—N2—C8 | −91.5 (2) |
| H··· | ||||
| N1—H1···O1 | 0.86 | 2.03 | 2.659 (2) | 130 |
| N1—H1···S1i | 0.86 | 2.81 | 3.4127 (19) | 129 |
| N3—H3A···O1ii | 0.86 | 1.93 | 2.772 (2) | 166 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1 | 0.86 | 2.03 | 2.659 (2) | 130 |
| N1—H1⋯S1i | 0.86 | 2.81 | 3.4127 (19) | 129 |
| N3—H3 | 0.86 | 1.93 | 2.772 (2) | 166 |
Symmetry codes: (i) ; (ii) .