Literature DB >> 21582762

4-(4-Oxopent-2-en-2-yl-amino)-1,2,4-triazol-1-ium-5-thiol-ate.

Xing-Cheng Zhu1, Qi-Long Zhang, Yun-Qian Zhang, Bi-Xue Zhu.   

Abstract

In the title compound, C(8)H(12)N(4)OS, an intra-molecular N-H⋯O hydrogen bond links the imine N atom to the oxo O atom. In the crystal, mol-ecules are linked by inter-molecular N-H⋯O and N-H⋯S hydrogen bonds, forming a two-dimensional framework.

Entities:  

Year:  2009        PMID: 21582762      PMCID: PMC2969399          DOI: 10.1107/S1600536809019850

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For Schiff base metal complexes, see: Lacroix (2001 ▶); Sabater et al. (2001 ▶). For the use of 1,2,4-triazole and its derivatives as ligands to bridge metal ions, see: Yi et al. (2004 ▶).

Experimental

Crystal data

C8H12N4OS M = 212.28 Monoclinic, a = 10.620 (6) Å b = 9.520 (5) Å c = 10.764 (5) Å β = 99.560 (14)° V = 1073.2 (10) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 293 K 0.26 × 0.23 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.932, T max = 0.952 9199 measured reflections 2071 independent reflections 1688 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.06 2071 reflections 130 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809019850/at2792sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019850/at2792Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N4OSF(000) = 448
Mr = 212.28Dx = 1.314 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9199 reflections
a = 10.620 (6) Åθ = 2.5–26.0°
b = 9.520 (5) ŵ = 0.28 mm1
c = 10.764 (5) ÅT = 293 K
β = 99.560 (14)°Prism, yellow
V = 1073.2 (10) Å30.26 × 0.23 × 0.18 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2071 independent reflections
Radiation source: fine-focus sealed tube1688 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 26.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→13
Tmin = 0.932, Tmax = 0.952k = −11→11
9199 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0494P)2 + 0.3337P] where P = (Fo2 + 2Fc2)/3
2071 reflections(Δ/σ)max < 0.001
130 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6978 (2)0.4476 (2)0.6177 (2)0.0581 (6)
H1A0.63850.48040.66950.087*
H1B0.72300.52460.56970.087*
H1C0.77170.40920.67020.087*
C20.63580 (17)0.3365 (2)0.53014 (16)0.0413 (4)
C30.51805 (18)0.2824 (2)0.53712 (17)0.0474 (5)
H30.47810.31330.60270.057*
C40.45166 (17)0.1828 (2)0.45229 (17)0.0437 (4)
C50.31956 (19)0.1390 (3)0.4704 (2)0.0598 (6)
H5A0.25740.19660.41910.090*
H5B0.31130.15000.55730.090*
H5C0.30580.04230.44640.090*
C60.9660 (2)0.1873 (2)0.5572 (2)0.0579 (5)
H6A1.05510.16440.56770.087*
H6B0.91620.10480.53180.087*
H6C0.94570.22120.63550.087*
C70.93642 (17)0.29676 (19)0.45994 (16)0.0420 (4)
C80.81958 (17)0.45095 (18)0.33090 (15)0.0377 (4)
N10.70361 (13)0.28695 (16)0.44362 (13)0.0430 (4)
H10.67610.21360.40100.052*
N20.81498 (13)0.34888 (15)0.42069 (13)0.0381 (3)
N30.94393 (14)0.45391 (16)0.32250 (14)0.0445 (4)
H3A0.97530.50920.27230.053*
N41.01765 (14)0.35996 (17)0.40183 (15)0.0483 (4)
O10.49708 (12)0.13376 (15)0.36199 (13)0.0536 (4)
S10.69902 (5)0.54628 (5)0.25545 (4)0.04948 (19)
U11U22U33U12U13U23
C10.0537 (13)0.0681 (14)0.0536 (11)−0.0014 (10)0.0118 (10)−0.0165 (10)
C20.0402 (10)0.0460 (10)0.0389 (9)0.0044 (8)0.0103 (8)0.0013 (7)
C30.0418 (11)0.0602 (12)0.0439 (10)0.0030 (9)0.0180 (8)−0.0033 (9)
C40.0370 (10)0.0495 (11)0.0474 (10)0.0029 (8)0.0151 (8)0.0062 (8)
C50.0426 (12)0.0754 (15)0.0653 (13)−0.0085 (10)0.0198 (10)0.0014 (11)
C60.0566 (13)0.0560 (12)0.0597 (12)0.0071 (10)0.0055 (10)0.0110 (10)
C70.0369 (10)0.0440 (10)0.0447 (9)0.0003 (8)0.0055 (8)−0.0035 (8)
C80.0379 (10)0.0402 (9)0.0360 (8)−0.0018 (7)0.0089 (7)−0.0040 (7)
N10.0388 (9)0.0446 (9)0.0490 (8)−0.0086 (7)0.0175 (7)−0.0082 (7)
N20.0316 (8)0.0411 (8)0.0427 (8)−0.0030 (6)0.0092 (6)−0.0012 (6)
N30.0359 (9)0.0500 (9)0.0493 (9)−0.0028 (7)0.0116 (7)0.0062 (7)
N40.0339 (8)0.0570 (10)0.0536 (9)0.0008 (7)0.0059 (7)0.0037 (7)
O10.0461 (8)0.0604 (9)0.0591 (8)−0.0084 (6)0.0223 (7)−0.0143 (7)
S10.0430 (3)0.0588 (3)0.0476 (3)0.0104 (2)0.0103 (2)0.0053 (2)
C1—C21.495 (3)C6—C71.474 (3)
C1—H1A0.9600C6—H6A0.9600
C1—H1B0.9600C6—H6B0.9600
C1—H1C0.9600C6—H6C0.9600
C2—N11.353 (2)C7—N41.295 (2)
C2—C31.366 (3)C7—N21.381 (2)
C3—C41.420 (3)C8—N31.339 (2)
C3—H30.9300C8—N21.377 (2)
C4—O11.245 (2)C8—S11.6664 (19)
C4—C51.507 (3)N1—N21.380 (2)
C5—H5A0.9600N1—H10.8600
C5—H5B0.9600N3—N41.386 (2)
C5—H5C0.9600N3—H3A0.8600
C2—C1—H1A109.5C7—C6—H6B109.5
C2—C1—H1B109.5H6A—C6—H6B109.5
H1A—C1—H1B109.5C7—C6—H6C109.5
C2—C1—H1C109.5H6A—C6—H6C109.5
H1A—C1—H1C109.5H6B—C6—H6C109.5
H1B—C1—H1C109.5N4—C7—N2110.40 (16)
N1—C2—C3120.20 (17)N4—C7—C6126.26 (17)
N1—C2—C1116.86 (17)N2—C7—C6123.32 (16)
C3—C2—C1122.92 (17)N3—C8—N2102.27 (15)
C2—C3—C4125.30 (16)N3—C8—S1129.95 (14)
C2—C3—H3117.4N2—C8—S1127.77 (14)
C4—C3—H3117.4C2—N1—N2122.95 (15)
O1—C4—C3122.48 (17)C2—N1—H1118.5
O1—C4—C5119.12 (18)N2—N1—H1118.5
C3—C4—C5118.38 (17)C8—N2—N1123.94 (14)
C4—C5—H5A109.5C8—N2—C7109.16 (14)
C4—C5—H5B109.5N1—N2—C7125.19 (15)
H5A—C5—H5B109.5C8—N3—N4114.05 (15)
C4—C5—H5C109.5C8—N3—H3A123.0
H5A—C5—H5C109.5N4—N3—H3A123.0
H5B—C5—H5C109.5C7—N4—N3104.12 (15)
C7—C6—H6A109.5
N1—C2—C3—C4−5.7 (3)C2—N1—N2—C7105.0 (2)
C1—C2—C3—C4176.25 (19)N4—C7—N2—C80.6 (2)
C2—C3—C4—O10.7 (3)C6—C7—N2—C8179.02 (17)
C2—C3—C4—C5−177.3 (2)N4—C7—N2—N1166.12 (16)
C3—C2—N1—N2171.33 (16)C6—C7—N2—N1−15.5 (3)
C1—C2—N1—N2−10.5 (3)N2—C8—N3—N4−0.11 (19)
N3—C8—N2—N1−166.02 (14)S1—C8—N3—N4179.01 (13)
S1—C8—N2—N114.8 (2)N2—C7—N4—N3−0.62 (19)
N3—C8—N2—C7−0.27 (18)C6—C7—N4—N3−178.99 (18)
S1—C8—N2—C7−179.42 (13)C8—N3—N4—C70.5 (2)
C2—N1—N2—C8−91.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.862.032.659 (2)130
N1—H1···S1i0.862.813.4127 (19)129
N3—H3A···O1ii0.861.932.772 (2)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.862.032.659 (2)130
N1—H1⋯S1i0.862.813.4127 (19)129
N3—H3A⋯O1ii0.861.932.772 (2)166

Symmetry codes: (i) ; (ii) .

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