Literature DB >> 21582758

6-Phenyl-5a,6,6a,7,12,13a-hexa-hydro-5H-benzo[6,7]indolizino[3,2-a]pyrrolizine.

B Gunasekaran, S Kathiravan, R Raghunathan, V Renuga, V Manivannan.   

Abstract

In the title compound, C(23)H(22)N(2), the central pyrrolidine ring adopts an envelope conformation. The benzene ring of the hexa-hydro-pyrroloisoquinoline ring system makes dihedral angles of 83.43 (6) and 61.99 (10)°, respectively, with the phenyl and pyrrole rings. In the crystal structure, weak C-H⋯π inter-actions are observed.

Entities:  

Year:  2009        PMID: 21582758      PMCID: PMC2969265          DOI: 10.1107/S1600536809020091

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity of pyrrolidine derivatives, see: Witherup et al. (1995 ▶); Kravchenko et al. (2005 ▶). For biological activity of pyrrole derivatives, see: Sobral & Rocha Gonsalves (2001a ▶,b ▶); Brockmann & Tour (1995 ▶); Suslick et al. (1992 ▶); Di Natale et al. (1998 ▶). For a related structure, see: Liu et al. (2007 ▶).

Experimental

Crystal data

C23H22N2 M = 326.43 Monoclinic, a = 14.0694 (14) Å b = 5.9300 (5) Å c = 21.177 (2) Å β = 104.563 (3)° V = 1710.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.20 × 0.20 × 0.15 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.985, T max = 0.989 20373 measured reflections 4266 independent reflections 3049 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.149 S = 1.01 4266 reflections 226 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020091/is2422sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020091/is2422Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H22N2F(000) = 696
Mr = 326.43Dx = 1.268 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6264 reflections
a = 14.0694 (14) Åθ = 2.0–28.4°
b = 5.9300 (5) ŵ = 0.07 mm1
c = 21.177 (2) ÅT = 293 K
β = 104.563 (3)°Needle, yellow
V = 1710.1 (3) Å30.20 × 0.20 × 0.15 mm
Z = 4
Bruker KappaAPEXII diffractometer4266 independent reflections
Radiation source: fine-focus sealed tube3049 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 0 pixels mm-1θmax = 28.4°, θmin = 2.0°
ω and φ scansh = −18→17
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −7→4
Tmin = 0.985, Tmax = 0.989l = −28→28
20373 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0757P)2 + 0.3733P] where P = (Fo2 + 2Fc2)/3
4266 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.42095 (9)0.02857 (19)0.64155 (6)0.0319 (3)
N20.26180 (10)0.2368 (2)0.50434 (6)0.0447 (3)
C90.42973 (10)0.2650 (2)0.66188 (7)0.0308 (3)
H90.36390.33020.65480.037*
C20.38439 (10)−0.0647 (2)0.74598 (7)0.0353 (3)
C80.48113 (11)0.2811 (3)0.73313 (7)0.0380 (3)
H8A0.47600.43430.74800.046*
H8B0.55020.24700.73900.046*
C100.48203 (10)0.3722 (2)0.61376 (7)0.0347 (3)
H100.46480.53260.60950.042*
C10.35781 (11)−0.0995 (2)0.67344 (7)0.0367 (3)
H1A0.3630−0.25860.66420.044*
H1B0.2901−0.05420.65560.044*
C230.39150 (11)0.0267 (2)0.56953 (7)0.0348 (3)
H230.4220−0.10110.55280.042*
C170.43198 (12)0.2536 (3)0.54943 (8)0.0400 (4)
H170.47960.22480.52360.048*
C70.43830 (10)0.1217 (2)0.77408 (7)0.0357 (3)
C110.59247 (11)0.3523 (2)0.63345 (7)0.0375 (3)
C60.45606 (12)0.1552 (3)0.84096 (8)0.0476 (4)
H60.49070.28200.85980.057*
C220.28437 (11)0.0379 (3)0.53632 (7)0.0392 (3)
C30.35068 (12)−0.2155 (3)0.78562 (8)0.0479 (4)
H30.3141−0.34030.76710.057*
C120.64174 (12)0.1645 (3)0.61992 (8)0.0472 (4)
H120.60620.04140.59910.057*
C140.79640 (14)0.3355 (4)0.66854 (11)0.0724 (6)
H140.86470.33050.67960.087*
C50.42305 (13)0.0033 (4)0.87978 (8)0.0555 (5)
H50.43620.02660.92460.067*
C160.64758 (13)0.5309 (3)0.66614 (9)0.0531 (4)
H160.61580.65850.67620.064*
C40.37077 (14)−0.1825 (4)0.85217 (9)0.0573 (5)
H40.3489−0.28630.87830.069*
C210.19983 (13)−0.0869 (3)0.52436 (8)0.0544 (5)
H210.1929−0.23100.53990.065*
C200.12558 (14)0.0442 (4)0.48407 (9)0.0637 (6)
H200.06030.00170.46830.076*
C190.16540 (13)0.2435 (4)0.47212 (9)0.0579 (5)
H190.13290.36160.44680.069*
C180.34333 (14)0.3849 (3)0.50884 (10)0.0663 (6)
H18A0.33410.52460.53040.080*
H18B0.35200.41950.46590.080*
C130.74311 (14)0.1569 (4)0.63685 (10)0.0634 (5)
H130.77540.03020.62670.076*
C150.74889 (15)0.5212 (4)0.68388 (11)0.0696 (6)
H150.78490.64090.70630.084*
U11U22U33U12U13U23
N10.0392 (6)0.0291 (6)0.0299 (6)−0.0006 (5)0.0136 (5)0.0012 (4)
N20.0475 (8)0.0488 (8)0.0345 (7)−0.0014 (6)0.0043 (6)0.0001 (6)
C90.0322 (7)0.0279 (6)0.0335 (8)0.0011 (5)0.0103 (6)0.0010 (5)
C20.0359 (7)0.0397 (7)0.0328 (8)0.0054 (6)0.0133 (6)0.0054 (6)
C80.0399 (8)0.0399 (8)0.0338 (8)−0.0039 (6)0.0085 (6)−0.0013 (6)
C100.0406 (8)0.0294 (7)0.0356 (8)−0.0011 (5)0.0127 (6)0.0035 (5)
C10.0450 (8)0.0321 (7)0.0358 (8)−0.0041 (6)0.0157 (6)0.0006 (6)
C230.0443 (8)0.0327 (7)0.0314 (7)−0.0013 (6)0.0167 (6)−0.0013 (5)
C170.0456 (8)0.0423 (8)0.0343 (8)−0.0065 (6)0.0143 (7)0.0043 (6)
C70.0325 (7)0.0436 (8)0.0317 (8)0.0064 (6)0.0095 (6)0.0033 (6)
C110.0399 (8)0.0385 (8)0.0373 (8)−0.0059 (6)0.0158 (6)0.0057 (6)
C60.0465 (9)0.0617 (10)0.0339 (8)−0.0002 (7)0.0086 (7)−0.0013 (7)
C220.0477 (9)0.0414 (8)0.0305 (7)−0.0066 (6)0.0132 (6)−0.0036 (6)
C30.0492 (9)0.0544 (10)0.0439 (9)−0.0047 (7)0.0187 (8)0.0083 (7)
C120.0464 (9)0.0467 (9)0.0530 (10)−0.0005 (7)0.0210 (8)0.0029 (7)
C140.0384 (10)0.1029 (18)0.0768 (15)−0.0080 (11)0.0159 (10)0.0205 (13)
C50.0539 (10)0.0837 (13)0.0305 (8)0.0026 (9)0.0138 (7)0.0060 (8)
C160.0524 (10)0.0499 (10)0.0568 (11)−0.0141 (8)0.0136 (8)−0.0027 (8)
C40.0572 (11)0.0792 (13)0.0411 (10)−0.0012 (9)0.0227 (8)0.0172 (9)
C210.0581 (11)0.0679 (12)0.0391 (9)−0.0228 (9)0.0157 (8)−0.0059 (8)
C200.0449 (10)0.1055 (17)0.0405 (10)−0.0142 (10)0.0105 (8)−0.0098 (10)
C190.0474 (10)0.0791 (13)0.0413 (10)0.0060 (9)0.0006 (8)−0.0050 (9)
C180.0655 (12)0.0555 (11)0.0623 (12)−0.0168 (9)−0.0126 (10)0.0245 (9)
C130.0515 (11)0.0744 (13)0.0722 (14)0.0120 (9)0.0303 (10)0.0125 (10)
C150.0526 (11)0.0799 (14)0.0719 (14)−0.0276 (11)0.0074 (10)0.0018 (11)
N1—C11.4574 (17)C11—C121.380 (2)
N1—C91.4625 (17)C11—C161.390 (2)
N1—C231.4764 (18)C6—C51.377 (2)
N2—C191.357 (2)C6—H60.9300
N2—C221.358 (2)C22—C211.369 (2)
N2—C181.429 (2)C3—C41.380 (2)
C9—C81.503 (2)C3—H30.9300
C9—C101.5366 (19)C12—C131.381 (2)
C9—H90.9800C12—H120.9300
C2—C71.387 (2)C14—C151.369 (3)
C2—C31.389 (2)C14—C131.372 (3)
C2—C11.501 (2)C14—H140.9300
C8—C71.507 (2)C5—C41.371 (3)
C8—H8A0.9700C5—H50.9300
C8—H8B0.9700C16—C151.381 (3)
C10—C111.509 (2)C16—H160.9300
C10—C171.537 (2)C4—H40.9300
C10—H100.9800C21—C201.405 (3)
C1—H1A0.9700C21—H210.9300
C1—H1B0.9700C20—C191.359 (3)
C23—C221.496 (2)C20—H200.9300
C23—C171.561 (2)C19—H190.9300
C23—H230.9800C18—H18A0.9700
C17—C181.537 (2)C18—H18B0.9700
C17—H170.9800C13—H130.9300
C7—C61.389 (2)C15—H150.9300
C1—N1—C9112.29 (11)C12—C11—C16118.18 (15)
C1—N1—C23115.43 (11)C12—C11—C10122.81 (14)
C9—N1—C23106.99 (10)C16—C11—C10119.01 (14)
C19—N2—C22110.79 (15)C5—C6—C7120.94 (17)
C19—N2—C18134.42 (16)C5—C6—H6119.5
C22—N2—C18114.69 (14)C7—C6—H6119.5
N1—C9—C8109.89 (11)N2—C22—C21107.09 (15)
N1—C9—C10102.73 (11)N2—C22—C23110.77 (13)
C8—C9—C10116.72 (12)C21—C22—C23142.08 (16)
N1—C9—H9109.1C4—C3—C2120.85 (17)
C8—C9—H9109.1C4—C3—H3119.6
C10—C9—H9109.1C2—C3—H3119.6
C7—C2—C3119.11 (14)C11—C12—C13120.81 (17)
C7—C2—C1121.14 (12)C11—C12—H12119.6
C3—C2—C1119.67 (14)C13—C12—H12119.6
C9—C8—C7112.12 (12)C15—C14—C13119.86 (18)
C9—C8—H8A109.2C15—C14—H14120.1
C7—C8—H8A109.2C13—C14—H14120.1
C9—C8—H8B109.2C4—C5—C6119.76 (16)
C7—C8—H8B109.2C4—C5—H5120.1
H8A—C8—H8B107.9C6—C5—H5120.1
C11—C10—C9114.59 (11)C15—C16—C11120.79 (19)
C11—C10—C17114.82 (12)C15—C16—H16119.6
C9—C10—C17102.09 (11)C11—C16—H16119.6
C11—C10—H10108.3C5—C4—C3119.97 (16)
C9—C10—H10108.3C5—C4—H4120.0
C17—C10—H10108.3C3—C4—H4120.0
N1—C1—C2112.25 (12)C22—C21—C20106.99 (17)
N1—C1—H1A109.2C22—C21—H21126.5
C2—C1—H1A109.2C20—C21—H21126.5
N1—C1—H1B109.2C19—C20—C21108.40 (17)
C2—C1—H1B109.2C19—C20—H20125.8
H1A—C1—H1B107.9C21—C20—H20125.8
N1—C23—C22118.24 (11)N2—C19—C20106.73 (17)
N1—C23—C17104.38 (11)N2—C19—H19126.6
C22—C23—C17103.13 (12)C20—C19—H19126.6
N1—C23—H23110.2N2—C18—C17104.54 (13)
C22—C23—H23110.2N2—C18—H18A110.8
C17—C23—H23110.2C17—C18—H18A110.8
C18—C17—C10112.99 (14)N2—C18—H18B110.8
C18—C17—C23106.78 (13)C17—C18—H18B110.8
C10—C17—C23105.64 (11)H18A—C18—H18B108.9
C18—C17—H17110.4C14—C13—C12120.24 (19)
C10—C17—H17110.4C14—C13—H13119.9
C23—C17—H17110.4C12—C13—H13119.9
C2—C7—C6119.35 (14)C14—C15—C16120.1 (2)
C2—C7—C8120.50 (13)C14—C15—H15120.0
C6—C7—C8120.09 (14)C16—C15—H15120.0
C1—N1—C9—C865.15 (15)C17—C10—C11—C16146.25 (14)
C23—N1—C9—C8−167.22 (11)C2—C7—C6—C51.6 (2)
C1—N1—C9—C10−169.97 (11)C8—C7—C6—C5−175.69 (15)
C23—N1—C9—C10−42.33 (13)C19—N2—C22—C21−0.11 (19)
N1—C9—C8—C7−48.57 (15)C18—N2—C22—C21−177.00 (16)
C10—C9—C8—C7−164.97 (12)C19—N2—C22—C23177.62 (13)
N1—C9—C10—C11−84.82 (14)C18—N2—C22—C230.7 (2)
C8—C9—C10—C1135.46 (17)N1—C23—C22—N2112.17 (14)
N1—C9—C10—C1739.94 (13)C17—C23—C22—N2−2.34 (15)
C8—C9—C10—C17160.22 (12)N1—C23—C22—C21−71.4 (3)
C9—N1—C1—C2−49.38 (16)C17—C23—C22—C21174.1 (2)
C23—N1—C1—C2−172.38 (11)C7—C2—C3—C4−0.4 (2)
C7—C2—C1—N120.18 (19)C1—C2—C3—C4−177.42 (15)
C3—C2—C1—N1−162.92 (13)C16—C11—C12—C13−1.7 (2)
C1—N1—C23—C2238.60 (17)C10—C11—C12—C13177.70 (15)
C9—N1—C23—C22−87.17 (14)C7—C6—C5—C4−0.8 (3)
C1—N1—C23—C17152.43 (12)C12—C11—C16—C150.7 (3)
C9—N1—C23—C1726.66 (14)C10—C11—C16—C15−178.73 (16)
C11—C10—C17—C18−142.72 (14)C6—C5—C4—C3−0.6 (3)
C9—C10—C17—C1892.68 (14)C2—C3—C4—C51.3 (3)
C11—C10—C17—C23100.90 (14)N2—C22—C21—C20−0.04 (19)
C9—C10—C17—C23−23.71 (14)C23—C22—C21—C20−176.58 (19)
N1—C23—C17—C18−121.16 (14)C22—C21—C20—C190.2 (2)
C22—C23—C17—C183.00 (16)C22—N2—C19—C200.2 (2)
N1—C23—C17—C10−0.62 (14)C18—N2—C19—C20176.3 (2)
C22—C23—C17—C10123.53 (12)C21—C20—C19—N2−0.2 (2)
C3—C2—C7—C6−1.0 (2)C19—N2—C18—C17−174.65 (17)
C1—C2—C7—C6175.95 (13)C22—N2—C18—C171.3 (2)
C3—C2—C7—C8176.34 (14)C10—C17—C18—N2−118.36 (16)
C1—C2—C7—C8−6.7 (2)C23—C17—C18—N2−2.7 (2)
C9—C8—C7—C220.92 (19)C15—C14—C13—C120.5 (3)
C9—C8—C7—C6−161.79 (13)C11—C12—C13—C141.2 (3)
C9—C10—C11—C1284.56 (17)C13—C14—C15—C16−1.5 (3)
C17—C10—C11—C12−33.18 (19)C11—C16—C15—C140.9 (3)
C9—C10—C11—C16−96.00 (16)
D—H···AD—HH···AD···AD—H···A
C4—H4···Cg3i0.932.883.7250 (3)152
C13—H13···Cg3ii0.932.943.5626 (3)126
C18—H18B···Cg6iii0.972.793.6726 (4)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯Cg3i0.932.883.7250 (3)152
C13—H13⋯Cg3ii0.932.943.5626 (3)126
C18—H18BCg6iii0.972.793.6726 (4)152

Symmetry codes: (i) ; (ii) ; (iii) . Cg3 and Cg6 are the centroids of the N2/C19–C22 and C11–C16 rings, respectively.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Pyrrolo[3,4-c]quinoline-1,3-diones as potent caspase-3 inhibitors. Synthesis and SAR of 2-substituted 4-methyl-8-(morpholine-4-sulfonyl)-pyrrolo[3,4-c]quinoline-1,3-diones.

Authors:  Dmitri V Kravchenko; Volodymyr M Kysil; Sergey E Tkachenko; Sergey Maliarchouk; Ilya M Okun; Alexandre V Ivachtchenko
Journal:  Eur J Med Chem       Date:  2005-09-15       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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