Literature DB >> 21582751

Poly[[hemi-μ(4)-oxalato-hemi-μ(2)-oxalato-bis-(μ(3)-pyrazine-2-carboxyl-ato)neodymium(III)silver(I)] monohydrate].

Tian-Jun Feng, Yan-Mei Wen.   

Abstract

In the title coordination polymer, {[AgNd(C(5)H(3)N(2)O(2))(2)(C(2)O(4))]·H(2)O}(n), the Nd(III) atom is coordinated in a distorted monocapped square-anti-prismatic geometry by two O and two N atoms of two N,O-bidentate pyrazine-2-carboxyl-ate (2-pzc) ligands, four O atoms of two bidentate oxalate ligands, and one O atom of a monodentate carboxyl-ate group of a 2-pzc ligand. The Ag(I) ion is coordinated in a distorted tetra-hedral geometry by two N atoms from two monodentate 2-pzc ligands, one O atom from one monodentate oxalate ligand and one O atom of a bridging carboxyl-ate group of a 2-pzc ligand. The oxalate anions link neighbouring neodymium(III) metal centres into Nd-oxalate chains, which are inter-connected by Ag(2-pyz)(2) units, forming a three-dimensional polymeric framework. Inter-molecular O-H⋯O and C-H⋯O hydrogen bonds are observed in the crystal structure.

Entities:  

Year:  2009        PMID: 21582751      PMCID: PMC2969187          DOI: 10.1107/S160053680902128X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to coordination polymers and open-framework materials, see: Barbour (2006 ▶); Kepert (2006 ▶); Kong et al. (2008 ▶); Zhang et al. (2005 ▶); Gheorghe et al. (2002 ▶). For the synthesis and crystal structure of heterometallic complexes of pyrazine-2-carboxylic acid, see: Ciurtin et al. (2002 ▶); Dong et al. (2000 ▶).

Experimental

Crystal data

[AgNd(C5n class="Species">H3N2O2)2(C2O4)]·H2O M = 604.33 Monoclinic, a = 10.112 (2) Å b = 18.847 (4) Å c = 8.0359 (16) Å β = 95.47 (3)° V = 1524.6 (5) Å3 Z = 4 Mo Kα radiation μ = 4.72 mm−1 T = 293 K 0.32 × 0.26 × 0.21 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.241, T max = 0.370 12072 measured reflections 2747 indepen class="Chemical">ndent reflections 1946 reflections with I > 2σ(I) R int = 0.093

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.111 S = 1.13 2747 reflections 244 parameters 3 restraints H-atom parameters constrained Δρmax = 1.59 e Å−3 Δρmin = −1.77 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680902128X/rz2330sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902128X/rz2330Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[AgNd(C5H3N2O2)2(C2O4)]·H2OF(000) = 1148
Mr = 604.33Dx = 2.633 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2433 reflections
a = 10.112 (2) Åθ = 1.4–28.0°
b = 18.847 (4) ŵ = 4.72 mm1
c = 8.0359 (16) ÅT = 293 K
β = 95.47 (3)°Block, colourless
V = 1524.6 (5) Å30.32 × 0.26 × 0.21 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer2747 independent reflections
Radiation source: fine-focus sealed tube1946 reflections with I > 2σ(I)
graphiteRint = 0.093
ω scansθmax = 25.2°, θmin = 3.3°
Absorption correction: multi-scan (REQAB; Jacobson, 1998)h = −12→12
Tmin = 0.241, Tmax = 0.370k = −22→22
12072 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0182P)2 + 17.3537P] where P = (Fo2 + 2Fc2)/3
2747 reflections(Δ/σ)max = 0.028
244 parametersΔρmax = 1.59 e Å3
3 restraintsΔρmin = −1.77 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ag11.15900 (9)0.92327 (6)0.60684 (11)0.0369 (3)
C10.9481 (10)0.9114 (6)0.0822 (13)0.026 (3)
N10.8209 (8)0.9101 (5)0.0274 (10)0.027 (2)
Nd10.64656 (5)0.89514 (3)0.26047 (7)0.02128 (18)
O10.8807 (6)0.9057 (5)0.3541 (8)0.0298 (19)
O1W0.9655 (10)0.7408 (7)0.0126 (18)0.099 (5)
H1W0.91990.74310.09450.149*
H2W0.92620.7594−0.07340.149*
C21.0449 (10)0.9146 (6)−0.0258 (13)0.029 (3)
H21.13370.91360.01680.035*
N21.0149 (9)0.9190 (5)−0.1900 (11)0.030 (2)
O21.0988 (7)0.9106 (5)0.3253 (8)0.035 (2)
C30.8869 (11)0.9176 (7)−0.2454 (13)0.037 (3)
H30.86220.9195−0.35980.045*
O31.6618 (7)0.8233 (4)0.5173 (9)0.034 (2)
C40.7896 (11)0.9134 (7)−0.1356 (12)0.034 (3)
H40.70060.9130−0.17750.041*
O41.7098 (7)0.7193 (4)0.6421 (10)0.0317 (18)
C50.9806 (10)0.9093 (6)0.2720 (13)0.027 (3)
O50.5044 (7)0.9079 (4)−0.0030 (9)0.0309 (18)
O60.3693 (7)0.9833 (4)−0.1510 (9)0.0304 (19)
O70.5658 (7)1.0571 (4)0.6552 (9)0.0274 (18)
O80.6685 (7)0.9827 (4)0.4928 (8)0.0270 (18)
N101.2894 (9)0.8232 (6)0.6898 (12)0.039 (3)
C110.4622 (10)0.9689 (6)−0.0439 (13)0.026 (3)
N111.4588 (8)0.7064 (5)0.7235 (10)0.024 (2)
C120.5689 (10)1.0120 (6)0.5441 (11)0.022 (2)
C61.4972 (10)0.7674 (6)0.6640 (13)0.027 (3)
C71.4155 (11)0.8253 (6)0.6552 (14)0.031 (3)
H71.44980.86850.62340.037*
C81.2491 (11)0.7609 (6)0.7402 (15)0.034 (3)
H81.16170.75600.76540.041*
C91.3340 (11)0.7018 (7)0.7569 (14)0.033 (3)
H91.30160.65870.79220.040*
C101.6348 (11)0.7698 (7)0.6033 (13)0.030 (3)
U11U22U33U12U13U23
Ag10.0338 (5)0.0520 (7)0.0262 (4)0.0081 (4)0.0096 (4)0.0043 (4)
C10.028 (6)0.024 (7)0.026 (6)−0.007 (5)0.006 (5)−0.004 (5)
N10.028 (5)0.035 (6)0.018 (4)−0.008 (4)0.002 (4)0.001 (4)
Nd10.0222 (3)0.0239 (3)0.0182 (3)0.0008 (3)0.0041 (2)−0.0008 (3)
O10.009 (3)0.063 (6)0.017 (3)−0.001 (4)0.001 (3)0.002 (4)
O1W0.052 (7)0.092 (11)0.155 (12)0.000 (6)0.020 (7)−0.042 (9)
C20.019 (5)0.040 (8)0.028 (6)0.009 (5)0.003 (4)0.009 (5)
N20.032 (5)0.037 (6)0.022 (5)−0.001 (4)0.008 (4)0.004 (4)
O20.021 (4)0.066 (7)0.017 (4)0.004 (4)−0.004 (3)−0.006 (4)
C30.033 (7)0.064 (10)0.014 (5)0.016 (6)−0.003 (5)−0.007 (5)
O30.036 (5)0.040 (6)0.027 (4)−0.009 (4)0.005 (3)0.015 (4)
C40.036 (7)0.055 (9)0.012 (5)−0.002 (6)0.007 (5)−0.007 (5)
O40.034 (4)0.015 (4)0.048 (5)−0.001 (3)0.013 (4)0.008 (4)
C50.027 (6)0.029 (7)0.025 (5)−0.008 (5)0.010 (5)0.006 (5)
O50.039 (5)0.029 (5)0.025 (4)−0.004 (4)0.000 (3)0.003 (4)
O60.022 (4)0.033 (5)0.035 (4)0.005 (3)−0.007 (3)0.002 (4)
O70.024 (4)0.033 (5)0.024 (4)−0.001 (3)0.000 (3)−0.008 (4)
O80.026 (4)0.034 (5)0.021 (4)0.007 (3)0.006 (3)−0.007 (3)
N100.029 (5)0.043 (7)0.043 (6)0.004 (5)−0.001 (5)0.004 (5)
C110.024 (6)0.028 (7)0.027 (6)0.002 (5)0.003 (5)0.008 (5)
N110.018 (4)0.027 (6)0.029 (5)0.000 (4)0.010 (4)0.001 (4)
C120.034 (6)0.020 (6)0.012 (5)0.000 (5)0.003 (4)−0.012 (4)
C60.026 (6)0.032 (7)0.023 (5)0.000 (5)0.002 (4)0.013 (5)
C70.034 (7)0.016 (7)0.043 (7)−0.001 (5)0.003 (5)0.002 (5)
C80.033 (6)0.022 (7)0.050 (7)−0.004 (5)0.019 (6)0.011 (6)
C90.038 (7)0.029 (7)0.032 (6)−0.004 (5)0.006 (5)0.011 (5)
C100.044 (7)0.029 (8)0.019 (5)−0.007 (6)0.010 (5)−0.004 (5)
Ag1—N2i2.291 (9)C3—H30.9300
Ag1—O22.299 (7)O3—C101.267 (13)
Ag1—N102.360 (10)O3—Nd1vii2.461 (7)
C1—N11.320 (13)C4—H40.9300
C1—C21.370 (14)O4—C101.240 (14)
C1—C51.530 (14)O4—Nd1viii2.465 (7)
N1—C41.319 (13)O5—C111.259 (13)
N1—Nd12.707 (8)O6—C111.242 (12)
Nd1—O12.423 (6)O6—Nd1ii2.455 (8)
Nd1—O6ii2.455 (8)O7—C121.235 (11)
Nd1—O52.456 (7)O7—Nd1v2.482 (7)
Nd1—O3iii2.461 (7)O8—C121.252 (12)
Nd1—O4iv2.465 (8)N10—C81.319 (15)
Nd1—O7v2.482 (7)N10—C71.332 (14)
Nd1—O82.486 (7)C11—C11ii1.53 (2)
Nd1—N11iv2.692 (9)N11—C91.317 (13)
O1—C51.260 (12)N11—C61.318 (14)
O1W—H1W0.8400N11—Nd1viii2.692 (9)
O1W—H2W0.8405C12—C12v1.57 (2)
C2—N21.328 (13)C6—C71.367 (15)
C2—H20.9300C6—C101.517 (15)
N2—C31.329 (13)C7—H70.9300
N2—Ag1vi2.291 (9)C8—C91.406 (16)
O2—C51.231 (12)C8—H80.9300
C3—C41.385 (15)C9—H90.9300
N2i—Ag1—O2124.8 (3)N2—C2—H2119.2
N2i—Ag1—N1098.4 (3)C1—C2—H2119.2
O2—Ag1—N10106.5 (3)C2—N2—C3117.0 (9)
N1—C1—C2121.5 (10)C2—N2—Ag1vi127.6 (7)
N1—C1—C5116.3 (9)C3—N2—Ag1vi115.3 (7)
C2—C1—C5122.3 (9)C5—O2—Ag1120.1 (7)
C1—N1—C4117.7 (9)N2—C3—C4121.1 (10)
C1—N1—Nd1116.7 (6)N2—C3—H3119.5
C4—N1—Nd1125.5 (7)C4—C3—H3119.5
O1—Nd1—O6ii93.6 (3)C10—O3—Nd1vii153.6 (7)
O1—Nd1—O5137.2 (2)N1—C4—C3121.1 (10)
O6ii—Nd1—O565.6 (2)N1—C4—H4119.4
O1—Nd1—O3iii78.7 (2)C3—C4—H4119.4
O6ii—Nd1—O3iii144.2 (3)C10—O4—Nd1viii126.5 (7)
O5—Nd1—O3iii139.7 (3)O2—C5—O1128.3 (10)
O1—Nd1—O4iv84.8 (3)O2—C5—C1117.1 (9)
O6ii—Nd1—O4iv133.5 (3)O1—C5—C1114.6 (9)
O5—Nd1—O4iv84.6 (3)C11—O5—Nd1118.1 (7)
O3iii—Nd1—O4iv81.1 (3)C11—O6—Nd1ii118.1 (7)
O1—Nd1—O7v136.9 (2)C12—O7—Nd1v122.0 (6)
O6ii—Nd1—O7v74.4 (2)C12—O8—Nd1121.6 (6)
O5—Nd1—O7v75.5 (2)C8—N10—C7114.8 (10)
O3iii—Nd1—O7v87.6 (3)C8—N10—Ag1128.1 (8)
O4iv—Nd1—O7v133.3 (2)C7—N10—Ag1116.0 (8)
O1—Nd1—O872.4 (2)O6—C11—O5126.5 (10)
O6ii—Nd1—O869.4 (2)O6—C11—C11ii117.6 (13)
O5—Nd1—O8125.8 (3)O5—C11—C11ii115.8 (11)
O3iii—Nd1—O875.0 (3)C9—N11—C6116.9 (9)
O4iv—Nd1—O8149.6 (2)C9—N11—Nd1viii127.6 (7)
O7v—Nd1—O864.6 (2)C6—N11—Nd1viii115.5 (6)
O1—Nd1—N11iv138.7 (3)O7—C12—O8128.2 (10)
O6ii—Nd1—N11iv127.1 (2)O7—C12—C12v116.3 (11)
O5—Nd1—N11iv68.0 (3)O8—C12—C12v115.5 (10)
O3iii—Nd1—N11iv71.9 (3)N11—C6—C7121.2 (10)
O4iv—Nd1—N11iv62.7 (3)N11—C6—C10117.0 (10)
O7v—Nd1—N11iv70.6 (3)C7—C6—C10121.9 (10)
O8—Nd1—N11iv124.5 (2)N10—C7—C6123.6 (11)
O1—Nd1—N161.6 (2)N10—C7—H7118.2
O6ii—Nd1—N171.3 (3)C6—C7—H7118.2
O5—Nd1—N176.1 (2)N10—C8—C9122.1 (11)
O3iii—Nd1—N1130.2 (3)N10—C8—H8118.9
O4iv—Nd1—N167.3 (3)C9—C8—H8118.9
O7v—Nd1—N1142.1 (3)N11—C9—C8121.1 (11)
O8—Nd1—N1115.7 (3)N11—C9—H9119.5
N11iv—Nd1—N1119.8 (3)C8—C9—H9119.5
C5—O1—Nd1130.6 (6)O4—C10—O3126.2 (11)
H1W—O1W—H2W111.8O4—C10—C6117.0 (10)
N2—C2—C1121.5 (10)O3—C10—C6116.8 (10)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O4iv0.842.312.975 (13)137
C3—H3···O1vi0.932.343.221 (12)158
C3—H3···O8vi0.932.493.150 (13)128
C4—H4···O50.932.543.170 (13)125
C9—H9···O2ix0.932.473.270 (15)145
C9—H9···O7x0.932.352.971 (15)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O4i0.842.312.975 (13)137
C3—H3⋯O1ii0.932.343.221 (12)158
C3—H3⋯O8ii0.932.493.150 (13)128
C4—H4⋯O50.932.543.170 (13)125
C9—H9⋯O2iii0.932.473.270 (15)145
C9—H9⋯O7iv0.932.352.971 (15)124

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  catena-Poly[[[tetra-aqua-erbium(III)]-μ-oxalato-κO,O:O,O] [bromidobis(pyrazine-2-carboxyl-ato-κN,O)cuprate(II)] tetra-hydrate].

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