Literature DB >> 21582724

Bis(2-meth-oxy-6-{[2-(methyl-ammonio)eth-yl]imino-meth-yl}phenolato)thio-cyanato-zinc(II) thio-cyanate hemihydrate.

Sanjun Peng, Fen Zhang.   

Abstract

The title mononuclear zinc(II) complex, [Zn(C(11)H(16)N(2)O(2))(2)(NCS)]NCS·0.5H(2)O, consists of a complex cation, a thio-cyanate anion, and half of a water mol-ecule. The Zn(II) atom in the cation is five-coordinated by two imine N and two phenolate O atoms from two bidentate Schiff base ligands, and by one N atom of a thio-cyanate ligand, forming a distorted trigonal-bipyramidal geometry. The ammonio H atoms are involved in hydrogen bonding with the ligand O atoms and the solvent water molecules (site occupation factor 0.5), which partially determines the conformation of the ligands.

Entities:  

Year:  2009        PMID: 21582724      PMCID: PMC2969465          DOI: 10.1107/S1600536809022326

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the properties of zinc(II) complexes, see: Lipscomb & Sträter (1996 ▶); Bertini et al. (1994 ▶); Harrison et al. (2006 ▶); Tirosh et al. (2005 ▶); Musie et al. (2004 ▶); Vallee & Auld (1993 ▶). For related structures, see: Li et al. (2008 ▶); Eltayeb et al. (2008 ▶); Zhang & Wang (2007 ▶); Cai (2009 ▶).

Experimental

Crystal data

[Zn(C11H16N2O2)2(NCS)]NCS·0.5H2O M = 607.06 Triclinic, a = 9.997 (2) Å b = 13.017 (3) Å c = 13.379 (3) Å α = 73.70 (3)° β = 77.95 (3)° γ = 72.25 (3)° V = 1577.0 (5) Å3 Z = 2 Mo Kα radiation μ = 0.95 mm−1 T = 298 K 0.30 × 0.28 × 0.27 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.764, T max = 0.784 12467 measured reflections 6300 independent reflections 3199 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.190 S = 0.99 6300 reflections 346 parameters 18 restraints H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022326/su2115sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022326/su2115Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C11H16N2O2)2(NCS)]NCS·0.5H2OZ = 2
Mr = 607.06F(000) = 634
Triclinic, P1Dx = 1.278 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.997 (2) ÅCell parameters from 1416 reflections
b = 13.017 (3) Åθ = 2.4–24.1°
c = 13.379 (3) ŵ = 0.95 mm1
α = 73.70 (3)°T = 298 K
β = 77.95 (3)°Block, colorless
γ = 72.25 (3)°0.30 × 0.28 × 0.27 mm
V = 1577.0 (5) Å3
Bruker SMART APEX CCD area-detector diffractometer6300 independent reflections
Radiation source: fine-focus sealed tube3199 reflections with I > 2σ(I)
graphiteRint = 0.057
ω scansθmax = 26.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −12→12
Tmin = 0.764, Tmax = 0.784k = −16→16
12467 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0763P)2] where P = (Fo2 + 2Fc2)/3
6300 reflections(Δ/σ)max < 0.001
346 parametersΔρmax = 0.51 e Å3
18 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.76677 (7)0.52215 (5)0.74443 (5)0.0565 (3)
S10.9762 (3)0.7599 (2)0.8261 (2)0.1405 (10)
S20.7074 (3)0.9701 (2)0.18236 (19)0.1322 (9)
O10.6935 (4)0.3968 (3)0.8352 (3)0.0743 (12)
O20.6337 (7)0.2068 (5)0.8807 (4)0.113 (2)
O30.7078 (5)0.5764 (3)0.6026 (3)0.0751 (12)
O40.5434 (6)0.6530 (5)0.4556 (3)0.0952 (15)
O50.9890 (14)0.0589 (13)0.7592 (16)0.201 (8)0.50
H5A0.93330.01690.78150.241*0.50
H5B1.05450.04780.70840.241*0.50
N10.5803 (6)0.6341 (5)0.8016 (4)0.0714 (14)
N20.5448 (7)0.7845 (4)0.5970 (4)0.0893 (18)
H2A0.57260.71150.59850.107*
H2B0.57460.82050.53210.107*
N30.9438 (6)0.4057 (4)0.6861 (5)0.0735 (15)
N40.9269 (6)0.2291 (4)0.8690 (4)0.0778 (15)
H4A0.96460.18490.82360.093*
H4B0.84120.27070.85190.093*
N50.8880 (6)0.5913 (5)0.7923 (5)0.0799 (16)
N60.6414 (11)0.8946 (7)0.3922 (8)0.150 (3)
C10.4525 (8)0.4901 (9)0.8824 (5)0.085 (2)
C20.5598 (8)0.3956 (7)0.8705 (4)0.0709 (19)
C30.5227 (10)0.2965 (9)0.8983 (5)0.092 (2)
C40.3836 (12)0.2933 (12)0.9369 (6)0.125 (4)
H40.36240.22500.95530.150*
C50.2823 (13)0.3802 (15)0.9484 (8)0.144 (6)
H50.19030.37410.97360.172*
C60.3115 (9)0.4821 (11)0.9230 (6)0.116 (3)
H60.23970.54510.93230.139*
C70.6075 (13)0.1001 (8)0.9051 (9)0.162 (5)
H7A0.57480.07930.97870.242*
H7B0.69360.04660.88760.242*
H7C0.53670.10250.86520.242*
C80.4715 (8)0.6024 (8)0.8540 (5)0.088 (2)
H80.39580.65690.87650.105*
C90.5723 (8)0.7536 (6)0.7858 (6)0.091 (2)
H9A0.63260.76130.82990.109*
H9B0.47570.79320.80670.109*
C100.6180 (9)0.8039 (6)0.6729 (6)0.096 (2)
H10A0.60070.88320.66400.115*
H10B0.71930.77360.65650.115*
C110.3859 (10)0.8191 (7)0.6135 (7)0.114 (3)
H11A0.35220.79580.68670.171*
H11B0.35020.78540.57310.171*
H11C0.35350.89840.59140.171*
C120.8471 (10)0.4272 (7)0.5243 (6)0.085 (2)
C130.7338 (8)0.5214 (6)0.5289 (5)0.0712 (19)
C140.6466 (9)0.5591 (7)0.4474 (5)0.081 (2)
C150.6657 (11)0.5033 (9)0.3720 (6)0.104 (3)
H150.60360.52820.32210.125*
C160.7754 (14)0.4109 (11)0.3687 (8)0.118 (4)
H160.78900.37450.31520.142*
C170.8643 (11)0.3716 (7)0.4418 (8)0.105 (3)
H170.93770.30780.43890.126*
C180.4627 (10)0.7033 (8)0.3714 (6)0.122 (3)
H18A0.52490.71800.30700.183*
H18B0.39790.77160.38320.183*
H18C0.41050.65430.36660.183*
C190.9490 (8)0.3819 (5)0.5987 (7)0.085 (2)
H191.02910.32810.58030.103*
C201.0633 (7)0.3501 (6)0.7456 (7)0.097 (2)
H20A1.11590.40290.74180.117*
H20B1.12630.29130.71370.117*
C211.0177 (7)0.3020 (6)0.8579 (7)0.085 (2)
H21A1.10080.26030.89230.102*
H21B0.96670.36170.89260.102*
C220.9086 (9)0.1580 (7)0.9783 (6)0.105 (3)
H22A0.99930.12521.00280.158*
H22B0.86760.10050.97750.158*
H22C0.84730.20291.02430.158*
C230.9247 (7)0.6603 (6)0.8069 (5)0.0772 (18)
C240.6730 (10)0.9266 (7)0.3022 (8)0.112 (3)
U11U22U33U12U13U23
Zn10.0650 (5)0.0525 (4)0.0489 (4)−0.0206 (3)0.0020 (3)−0.0083 (3)
S10.183 (2)0.131 (2)0.153 (2)−0.0873 (19)−0.0027 (18)−0.0688 (17)
S20.178 (2)0.1057 (17)0.0884 (16)−0.0077 (16)−0.0165 (15)−0.0174 (13)
O10.072 (3)0.074 (3)0.070 (3)−0.034 (2)−0.010 (2)0.010 (2)
O20.139 (5)0.099 (4)0.120 (4)−0.080 (4)−0.067 (4)0.036 (3)
O30.107 (3)0.068 (3)0.047 (2)−0.025 (2)0.001 (2)−0.014 (2)
O40.133 (4)0.111 (4)0.050 (3)−0.053 (4)−0.013 (3)−0.007 (3)
O50.117 (10)0.167 (14)0.36 (3)−0.047 (10)−0.001 (12)−0.148 (16)
N10.074 (4)0.090 (4)0.044 (3)−0.008 (3)−0.009 (3)−0.022 (3)
N20.131 (6)0.059 (3)0.068 (4)−0.018 (4)−0.021 (4)−0.001 (3)
N30.073 (4)0.063 (3)0.081 (4)−0.028 (3)0.019 (3)−0.021 (3)
N40.096 (4)0.053 (3)0.089 (4)−0.024 (3)−0.028 (3)−0.007 (3)
N50.076 (4)0.084 (4)0.095 (4)−0.036 (3)0.004 (3)−0.038 (3)
N60.199 (7)0.121 (6)0.124 (6)−0.057 (5)0.000 (5)−0.018 (5)
C10.080 (6)0.151 (8)0.034 (3)−0.047 (6)−0.003 (3)−0.021 (4)
C20.073 (5)0.111 (6)0.030 (3)−0.046 (5)−0.010 (3)0.007 (3)
C30.114 (7)0.130 (7)0.047 (4)−0.075 (6)−0.033 (4)0.021 (4)
C40.120 (8)0.226 (13)0.056 (5)−0.121 (9)−0.014 (6)0.007 (6)
C50.105 (8)0.31 (2)0.069 (6)−0.127 (11)0.016 (6)−0.059 (9)
C60.074 (5)0.236 (12)0.060 (5)−0.057 (7)0.012 (4)−0.067 (6)
C70.233 (12)0.125 (8)0.174 (10)−0.131 (8)−0.104 (9)0.040 (7)
C80.063 (4)0.146 (8)0.041 (4)0.000 (5)−0.004 (3)−0.032 (4)
C90.113 (6)0.079 (5)0.076 (5)0.007 (4)−0.023 (4)−0.039 (4)
C100.134 (7)0.066 (4)0.093 (6)−0.021 (4)−0.032 (5)−0.021 (4)
C110.120 (7)0.102 (6)0.115 (7)−0.005 (5)−0.038 (5)−0.029 (5)
C120.111 (6)0.084 (5)0.064 (4)−0.053 (5)0.032 (4)−0.024 (4)
C130.095 (5)0.070 (4)0.052 (4)−0.049 (4)0.032 (4)−0.019 (3)
C140.119 (6)0.092 (5)0.044 (4)−0.062 (5)0.012 (4)−0.015 (4)
C150.143 (8)0.137 (8)0.058 (5)−0.086 (7)0.022 (5)−0.037 (5)
C160.162 (10)0.148 (9)0.082 (6)−0.103 (8)0.051 (6)−0.064 (7)
C170.134 (7)0.093 (6)0.088 (6)−0.054 (5)0.047 (6)−0.043 (5)
C180.151 (7)0.166 (9)0.066 (5)−0.080 (7)−0.028 (5)−0.003 (5)
C190.087 (5)0.051 (4)0.103 (6)−0.031 (4)0.042 (5)−0.020 (4)
C200.056 (4)0.068 (5)0.156 (8)−0.017 (4)0.000 (5)−0.018 (5)
C210.072 (4)0.062 (4)0.131 (7)−0.022 (4)−0.026 (4)−0.022 (4)
C220.139 (7)0.089 (5)0.085 (5)−0.028 (5)−0.047 (5)0.004 (4)
C230.077 (5)0.085 (5)0.072 (4)−0.022 (4)−0.002 (3)−0.029 (4)
C240.166 (8)0.074 (5)0.092 (6)−0.041 (5)−0.002 (6)−0.015 (5)
Zn1—O31.977 (4)C5—H50.9300
Zn1—O11.979 (4)C6—H60.9300
Zn1—N52.001 (6)C7—H7A0.9600
Zn1—N32.119 (5)C7—H7B0.9600
Zn1—N12.135 (5)C7—H7C0.9600
S1—C231.632 (8)C8—H80.9300
S2—C241.545 (10)C9—C101.503 (10)
O1—C21.325 (7)C9—H9A0.9700
O2—C31.381 (10)C9—H9B0.9700
O2—C71.426 (9)C10—H10A0.9700
O3—C131.314 (7)C10—H10B0.9700
O4—C141.353 (9)C11—H11A0.9600
O4—C181.412 (9)C11—H11B0.9600
O5—H5A0.8500C11—H11C0.9600
O5—H5B0.8500C12—C131.399 (10)
N1—C81.280 (9)C12—C171.437 (11)
N1—C91.489 (9)C12—C191.450 (11)
N2—C101.483 (9)C13—C141.423 (10)
N2—C111.499 (10)C14—C151.351 (10)
N2—H2A0.9000C15—C161.363 (13)
N2—H2B0.9000C15—H150.9300
N3—C191.278 (9)C16—C171.347 (13)
N3—C201.460 (9)C16—H160.9300
N4—C211.462 (8)C17—H170.9300
N4—C221.503 (9)C18—H18A0.9600
N4—H4A0.9000C18—H18B0.9600
N4—H4B0.9000C18—H18C0.9600
N5—C231.144 (8)C19—H190.9300
N6—C241.168 (10)C20—C211.489 (10)
C1—C21.387 (10)C20—H20A0.9700
C1—C61.425 (11)C20—H20B0.9700
C1—C81.465 (11)C21—H21A0.9700
C2—C31.380 (10)C21—H21B0.9700
C3—C41.388 (12)C22—H22A0.9600
C4—C51.290 (16)C22—H22B0.9600
C4—H40.9300C22—H22C0.9600
C5—C61.380 (15)
O3—Zn1—O1114.77 (18)C10—C9—H9A109.4
O3—Zn1—N5122.2 (2)N1—C9—H9B109.4
O1—Zn1—N5123.0 (2)C10—C9—H9B109.4
O3—Zn1—N389.1 (2)H9A—C9—H9B108.0
O1—Zn1—N388.67 (19)N2—C10—C9114.0 (7)
N5—Zn1—N393.1 (2)N2—C10—H10A108.8
O3—Zn1—N189.57 (18)C9—C10—H10A108.8
O1—Zn1—N189.0 (2)N2—C10—H10B108.8
N5—Zn1—N190.4 (2)C9—C10—H10B108.8
N3—Zn1—N1176.5 (2)H10A—C10—H10B107.7
C2—O1—Zn1128.0 (4)N2—C11—H11A109.5
C3—O2—C7118.9 (8)N2—C11—H11B109.5
C13—O3—Zn1128.1 (4)H11A—C11—H11B109.5
C14—O4—C18116.7 (7)N2—C11—H11C109.5
H5A—O5—H5B120.0H11A—C11—H11C109.5
C8—N1—C9116.2 (6)H11B—C11—H11C109.5
C8—N1—Zn1122.4 (5)C13—C12—C17118.7 (9)
C9—N1—Zn1121.3 (5)C13—C12—C19123.6 (7)
C10—N2—C11116.9 (6)C17—C12—C19117.7 (9)
C10—N2—H2A108.1O3—C13—C12123.0 (7)
C11—N2—H2A108.1O3—C13—C14119.9 (7)
C10—N2—H2B108.1C12—C13—C14117.1 (7)
C11—N2—H2B108.1C15—C14—O4124.8 (8)
H2A—N2—H2B107.3C15—C14—C13122.1 (9)
C19—N3—C20118.3 (7)O4—C14—C13113.0 (6)
C19—N3—Zn1121.3 (5)C14—C15—C16120.4 (10)
C20—N3—Zn1120.4 (5)C14—C15—H15119.8
C21—N4—C22113.0 (6)C16—C15—H15119.8
C21—N4—H4A109.0C17—C16—C15120.8 (9)
C22—N4—H4A109.0C17—C16—H16119.6
C21—N4—H4B109.0C15—C16—H16119.6
C22—N4—H4B109.0C16—C17—C12120.8 (9)
H4A—N4—H4B107.8C16—C17—H17119.6
C23—N5—Zn1157.9 (6)C12—C17—H17119.6
C2—C1—C6120.1 (9)O4—C18—H18A109.5
C2—C1—C8124.6 (6)O4—C18—H18B109.5
C6—C1—C8115.3 (9)H18A—C18—H18B109.5
O1—C2—C3119.7 (8)O4—C18—H18C109.5
O1—C2—C1123.2 (7)H18A—C18—H18C109.5
C3—C2—C1117.1 (8)H18B—C18—H18C109.5
C2—C3—O2113.9 (7)N3—C19—C12128.9 (7)
C2—C3—C4120.6 (11)N3—C19—H19115.5
O2—C3—C4125.5 (9)C12—C19—H19115.5
C5—C4—C3123.3 (12)N3—C20—C21112.5 (6)
C5—C4—H4118.4N3—C20—H20A109.1
C3—C4—H4118.4C21—C20—H20A109.1
C4—C5—C6119.4 (11)N3—C20—H20B109.1
C4—C5—H5120.3C21—C20—H20B109.1
C6—C5—H5120.3H20A—C20—H20B107.8
C5—C6—C1119.5 (11)N4—C21—C20111.9 (6)
C5—C6—H6120.2N4—C21—H21A109.2
C1—C6—H6120.2C20—C21—H21A109.2
O2—C7—H7A109.5N4—C21—H21B109.2
O2—C7—H7B109.5C20—C21—H21B109.2
H7A—C7—H7B109.5H21A—C21—H21B107.9
O2—C7—H7C109.5N4—C22—H22A109.5
H7A—C7—H7C109.5N4—C22—H22B109.5
H7B—C7—H7C109.5H22A—C22—H22B109.5
N1—C8—C1127.5 (7)N4—C22—H22C109.5
N1—C8—H8116.3H22A—C22—H22C109.5
C1—C8—H8116.3H22B—C22—H22C109.5
N1—C9—C10111.2 (5)N5—C23—S1179.2 (7)
N1—C9—H9A109.4N6—C24—S2177.3 (10)
D—H···AD—HH···AD···AD—H···A
N4—H4B···O20.902.383.001 (8)126
N4—H4B···O10.901.842.682 (7)155
N4—H4A···O50.901.992.839 (14)157
N2—H2B···N60.901.932.834 (11)179
N2—H2A···O40.902.352.889 (8)119
N2—H2A···O30.901.862.691 (7)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4B⋯O20.902.383.001 (8)126
N4—H4B⋯O10.901.842.682 (7)155
N4—H4A⋯O50.901.992.839 (14)157
N2—H2B⋯N60.901.932.834 (11)179
N2—H2A⋯O40.902.352.889 (8)119
N2—H2A⋯O30.901.862.691 (7)153
  5 in total

1.  Recent Advances in Zinc Enzymology.

Authors:  William N. Lipscomb; Norbert Sträter
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Bis{2-methoxy-6-[(4-methyl-phen-yl)iminiometh-yl]-phenolato-κO}bis-(thio-cyanato-κN)zinc(II).

Authors:  Hua-Qiong Li; Hui-Duo Xian; Jian-Feng Liu; Guo-Liang Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

4.  (Acetone-κO){6,6'-di-tert-butyl-2,2'-[1,2-phenyl-enebis(nitrilo-methyl-idyne)]diphenolato-κO,N,N',O'}zinc(II).

Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Suchada Chantrapromma; Hoong-Kun Fun; Rohana Adnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-30

5.  [(2-Morpholinoeth-yl)(2-pyridylmethyl-ene)amine]dithio-cyanato-zinc(II).

Authors:  Bang-Hong Cai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08
  5 in total

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