| Literature DB >> 21582710 |
Na Wang1, Yan-Jun Wang, Qiu-Yue Lin.
Abstract
The title compound, [Cd(C(8)H(8)O(5))(C(3)H(4)N(2))(2)](n), was synthesized by the reaction of 7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxylic anhydride, cadmium acetate and imidazole. The Cd(II) atom is seven-coordinated in a distorted penta-gonal-bipyramidal configuration by five O atoms from carboxyl-ate groups of three 7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxylate ligands and two N atoms from two imidazole ligands. The crystal structure is stabilized by N-H⋯O and C-H⋯O hydrogen-bonding and C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21582710 PMCID: PMC2969310 DOI: 10.1107/S1600536809021801
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C8H8O5)(C3H4N2)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3164 reflections |
| θ = 1.8–25.0° | |
| µ = 1.41 mm−1 | |
| β = 112.761 (7)° | Block, colourless |
| 0.12 × 0.06 × 0.05 mm | |
| Bruker APEXII area-detector diffractometer | 2777 independent reflections |
| Radiation source: fine-focus sealed tube | 2310 reflections with |
| graphite | |
| ω scans | θmax = 25.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 10791 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2777 reflections | (Δ/σ)max < 0.001 |
| 217 parameters | Δρmax = 2.92 e Å−3 |
| 234 restraints | Δρmin = −1.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 0.56124 (6) | 0.12069 (7) | 0.41461 (5) | 0.0343 (3) | |
| C1 | 0.3497 (10) | −0.0468 (14) | 0.3258 (10) | 0.054 (2) | |
| C2 | 0.2845 (10) | −0.2300 (14) | 0.1484 (11) | 0.057 (2) | |
| C3 | 0.2272 (12) | −0.0995 (16) | 0.2847 (13) | 0.072 (2) | |
| H3A | 0.2224 | −0.1610 | 0.3380 | 0.086* | |
| C4 | 0.1928 (11) | −0.1894 (18) | 0.1877 (12) | 0.073 (2) | |
| H4A | 0.1672 | −0.2772 | 0.2066 | 0.088* | |
| C5 | 0.1415 (13) | −0.0051 (18) | 0.2677 (13) | 0.083 (3) | |
| H5A | 0.1617 | 0.0762 | 0.3126 | 0.099* | |
| C6 | 0.0917 (13) | −0.1236 (17) | 0.1263 (14) | 0.080 (3) | |
| H6A | 0.0743 | −0.1363 | 0.0532 | 0.096* | |
| C7 | 0.0267 (13) | −0.0946 (18) | 0.2649 (14) | 0.083 (3) | |
| H7A | 0.0478 | −0.1647 | 0.3180 | 0.100* | |
| H7B | −0.0321 | −0.0346 | 0.2715 | 0.100* | |
| C8 | −0.0141 (13) | −0.1606 (19) | 0.1553 (13) | 0.081 (3) | |
| H8A | −0.0851 | −0.1187 | 0.1084 | 0.097* | |
| H8B | −0.0246 | −0.2599 | 0.1573 | 0.097* | |
| C9 | 0.7916 (10) | −0.0684 (14) | 0.4431 (9) | 0.054 (3) | |
| H9A | 0.8443 | −0.0022 | 0.4815 | 0.064* | |
| C10 | 0.8193 (11) | −0.1875 (15) | 0.4113 (10) | 0.060 (3) | |
| H10A | 0.8935 | −0.2187 | 0.4231 | 0.072* | |
| C11 | 0.6339 (10) | −0.1723 (13) | 0.3608 (9) | 0.051 (2) | |
| H11A | 0.5560 | −0.1953 | 0.3299 | 0.061* | |
| C12 | 0.3507 (10) | 0.3209 (13) | 0.4170 (9) | 0.050 (2) | |
| H12A | 0.3139 | 0.2518 | 0.4388 | 0.060* | |
| C13 | 0.3119 (11) | 0.4481 (13) | 0.3898 (10) | 0.055 (3) | |
| H13A | 0.2432 | 0.4845 | 0.3897 | 0.066* | |
| C14 | 0.4742 (10) | 0.4295 (13) | 0.3745 (9) | 0.050 (2) | |
| H14A | 0.5396 | 0.4509 | 0.3616 | 0.060* | |
| N1 | 0.4556 (8) | 0.3092 (9) | 0.4073 (6) | 0.0389 (19) | |
| N2 | 0.3900 (9) | 0.5160 (10) | 0.3620 (8) | 0.055 (3) | |
| H2A | 0.3849 | 0.5999 | 0.3404 | 0.066* | |
| N3 | 0.6737 (7) | −0.0577 (9) | 0.4109 (6) | 0.0385 (19) | |
| N4 | 0.7219 (10) | −0.2529 (10) | 0.3601 (8) | 0.058 (3) | |
| H4B | 0.7153 | −0.3326 | 0.3313 | 0.070* | |
| O1 | 0.1232 (10) | 0.0205 (13) | 0.1600 (10) | 0.102 (3) | |
| O2 | 0.3853 (6) | 0.0273 (8) | 0.2739 (6) | 0.0493 (16) | |
| O3 | 0.4150 (8) | −0.0683 (11) | 0.4176 (6) | 0.064 (2) | |
| O4 | 0.2664 (7) | −0.2321 (9) | 0.0572 (7) | 0.0558 (18) | |
| O5 | 0.3769 (6) | −0.2772 (8) | 0.2164 (5) | 0.0425 (15) |
| Cd1 | 0.0361 (5) | 0.0323 (5) | 0.0371 (5) | 0.0007 (3) | 0.0170 (3) | 0.0026 (3) |
| C1 | 0.042 (4) | 0.063 (4) | 0.067 (4) | −0.001 (3) | 0.032 (3) | −0.023 (4) |
| C2 | 0.039 (4) | 0.064 (5) | 0.076 (5) | −0.007 (4) | 0.032 (4) | −0.028 (4) |
| C3 | 0.049 (4) | 0.082 (5) | 0.089 (5) | −0.006 (4) | 0.031 (4) | −0.034 (4) |
| C4 | 0.048 (4) | 0.083 (5) | 0.091 (5) | −0.003 (4) | 0.029 (4) | −0.035 (4) |
| C5 | 0.059 (4) | 0.087 (5) | 0.095 (5) | −0.004 (4) | 0.023 (4) | −0.029 (4) |
| C6 | 0.054 (4) | 0.085 (5) | 0.094 (5) | −0.004 (4) | 0.021 (4) | −0.030 (4) |
| C7 | 0.055 (5) | 0.097 (5) | 0.097 (5) | −0.004 (4) | 0.029 (4) | −0.030 (5) |
| C8 | 0.055 (4) | 0.091 (5) | 0.096 (5) | −0.003 (4) | 0.028 (4) | −0.032 (5) |
| C9 | 0.041 (5) | 0.056 (6) | 0.060 (5) | 0.011 (5) | 0.014 (4) | 0.002 (5) |
| C10 | 0.047 (5) | 0.064 (6) | 0.067 (6) | 0.016 (5) | 0.018 (5) | 0.001 (5) |
| C11 | 0.043 (4) | 0.052 (5) | 0.057 (5) | 0.006 (4) | 0.020 (4) | −0.001 (4) |
| C12 | 0.044 (5) | 0.053 (5) | 0.064 (5) | 0.003 (4) | 0.033 (4) | 0.000 (4) |
| C13 | 0.051 (5) | 0.052 (5) | 0.068 (6) | 0.007 (5) | 0.029 (5) | 0.003 (5) |
| C14 | 0.050 (5) | 0.050 (5) | 0.057 (5) | −0.002 (5) | 0.029 (4) | 0.001 (5) |
| N1 | 0.049 (5) | 0.030 (4) | 0.041 (4) | −0.001 (4) | 0.021 (4) | −0.003 (4) |
| N2 | 0.071 (7) | 0.032 (5) | 0.065 (6) | 0.014 (5) | 0.031 (5) | 0.013 (4) |
| N3 | 0.037 (5) | 0.037 (5) | 0.041 (5) | 0.003 (4) | 0.015 (4) | 0.001 (4) |
| N4 | 0.087 (8) | 0.038 (5) | 0.054 (6) | 0.017 (5) | 0.031 (5) | −0.007 (4) |
| O1 | 0.081 (5) | 0.090 (6) | 0.109 (6) | 0.012 (5) | 0.006 (5) | 0.000 (5) |
| O2 | 0.046 (3) | 0.050 (4) | 0.060 (4) | 0.001 (3) | 0.029 (3) | 0.006 (3) |
| O3 | 0.066 (5) | 0.086 (5) | 0.046 (4) | 0.018 (4) | 0.028 (3) | 0.004 (4) |
| O4 | 0.050 (4) | 0.055 (4) | 0.060 (4) | 0.011 (3) | 0.019 (3) | −0.002 (3) |
| O5 | 0.045 (3) | 0.042 (4) | 0.046 (3) | 0.003 (3) | 0.024 (3) | −0.005 (3) |
| Cd1—N1 | 2.230 (9) | C7—H7A | 0.9700 |
| Cd1—N3 | 2.240 (9) | C7—H7B | 0.9700 |
| Cd1—O3i | 2.333 (8) | C8—H8A | 0.9700 |
| Cd1—O5ii | 2.476 (7) | C8—H8B | 0.9700 |
| Cd1—O4ii | 2.487 (8) | C9—C10 | 1.329 (18) |
| Cd1—O2 | 2.500 (8) | C9—N3 | 1.372 (14) |
| Cd1—O3 | 2.599 (10) | C9—H9A | 0.9300 |
| C1—O2 | 1.226 (15) | C10—N4 | 1.316 (17) |
| C1—O3 | 1.258 (15) | C10—H10A | 0.9300 |
| C1—C3 | 1.506 (17) | C11—N3 | 1.305 (15) |
| C2—O4 | 1.222 (15) | C11—N4 | 1.354 (15) |
| C2—O5 | 1.271 (15) | C11—H11A | 0.9300 |
| C2—C4 | 1.510 (17) | C12—C13 | 1.323 (18) |
| C3—C5 | 1.36 (2) | C12—N1 | 1.379 (14) |
| C3—C4 | 1.540 (19) | C12—H12A | 0.9300 |
| C3—H3A | 0.9800 | C13—N2 | 1.357 (16) |
| C4—C6 | 1.38 (2) | C13—H13A | 0.9300 |
| C4—H4A | 0.9800 | C14—N1 | 1.306 (15) |
| C5—O1 | 1.47 (2) | C14—N2 | 1.304 (15) |
| C5—C7 | 1.67 (2) | C14—H14A | 0.9300 |
| C5—H5A | 0.9800 | N2—H2A | 0.8600 |
| C6—O1 | 1.476 (18) | N4—H4B | 0.8600 |
| C6—C8 | 1.57 (2) | O3—Cd1i | 2.333 (8) |
| C6—H6A | 0.9800 | O4—Cd1iii | 2.487 (8) |
| C7—C8 | 1.57 (2) | O5—Cd1iii | 2.476 (7) |
| N1—Cd1—N3 | 174.2 (3) | C8—C6—H6A | 112.5 |
| N1—Cd1—O3i | 93.7 (3) | C8—C7—C5 | 100.5 (13) |
| N3—Cd1—O3i | 91.4 (3) | C8—C7—H7A | 111.7 |
| N1—Cd1—O5ii | 89.6 (3) | C5—C7—H7A | 111.7 |
| N3—Cd1—O5ii | 84.6 (3) | C8—C7—H7B | 111.7 |
| O3i—Cd1—O5ii | 153.7 (3) | C5—C7—H7B | 111.7 |
| N1—Cd1—O4ii | 90.2 (3) | H7A—C7—H7B | 109.4 |
| N3—Cd1—O4ii | 85.8 (3) | C7—C8—C6 | 100.4 (12) |
| O3i—Cd1—O4ii | 101.5 (3) | C7—C8—H8A | 111.7 |
| O5ii—Cd1—O4ii | 52.3 (3) | C6—C8—H8A | 111.7 |
| N1—Cd1—O2 | 86.1 (3) | C7—C8—H8B | 111.7 |
| N3—Cd1—O2 | 94.2 (3) | C6—C8—H8B | 111.7 |
| O3i—Cd1—O2 | 117.3 (3) | H8A—C8—H8B | 109.5 |
| O5ii—Cd1—O2 | 89.0 (2) | C10—C9—N3 | 110.0 (12) |
| O4ii—Cd1—O2 | 141.1 (3) | C10—C9—H9A | 125.0 |
| N1—Cd1—O3 | 99.5 (3) | N3—C9—H9A | 125.0 |
| N3—Cd1—O3 | 85.1 (3) | N4—C10—C9 | 107.1 (11) |
| O3i—Cd1—O3 | 69.1 (4) | N4—C10—H10A | 126.5 |
| O5ii—Cd1—O3 | 136.0 (3) | C9—C10—H10A | 126.5 |
| O4ii—Cd1—O3 | 166.8 (3) | N3—C11—N4 | 110.6 (11) |
| O2—Cd1—O3 | 49.4 (3) | N3—C11—H11A | 124.7 |
| O2—C1—O3 | 118.3 (11) | N4—C11—H11A | 124.7 |
| O2—C1—C3 | 121.3 (13) | C13—C12—N1 | 107.8 (11) |
| O3—C1—C3 | 120.1 (13) | C13—C12—H12A | 126.1 |
| O4—C2—O5 | 122.5 (10) | N1—C12—H12A | 126.1 |
| O4—C2—C4 | 122.5 (13) | C12—C13—N2 | 107.9 (11) |
| O5—C2—C4 | 114.5 (12) | C12—C13—H13A | 126.1 |
| C5—C3—C1 | 117.4 (13) | N2—C13—H13A | 126.1 |
| C5—C3—C4 | 106.9 (13) | N1—C14—N2 | 111.8 (10) |
| C1—C3—C4 | 115.3 (11) | N1—C14—H14A | 124.1 |
| C5—C3—H3A | 105.4 | N2—C14—H14A | 124.1 |
| C1—C3—H3A | 105.4 | C14—N1—C12 | 105.7 (10) |
| C4—C3—H3A | 105.4 | C14—N1—Cd1 | 124.0 (7) |
| C6—C4—C2 | 122.0 (16) | C12—N1—Cd1 | 129.4 (8) |
| C6—C4—C3 | 100.0 (12) | C14—N2—C13 | 106.8 (10) |
| C2—C4—C3 | 119.0 (11) | C14—N2—H2A | 126.6 |
| C6—C4—H4A | 104.6 | C13—N2—H2A | 126.6 |
| C2—C4—H4A | 104.6 | C11—N3—C9 | 104.6 (10) |
| C3—C4—H4A | 104.6 | C11—N3—Cd1 | 123.6 (7) |
| C3—C5—O1 | 95.3 (13) | C9—N3—Cd1 | 131.1 (8) |
| C3—C5—C7 | 105.8 (14) | C10—N4—C11 | 107.7 (10) |
| O1—C5—C7 | 106.0 (12) | C10—N4—H4B | 126.1 |
| C3—C5—H5A | 115.8 | C11—N4—H4B | 126.1 |
| O1—C5—H5A | 115.8 | C6—O1—C5 | 95.3 (13) |
| C7—C5—H5A | 115.8 | C1—O2—Cd1 | 98.4 (7) |
| C4—C6—O1 | 99.4 (12) | C1—O3—Cd1i | 149.9 (8) |
| C4—C6—C8 | 113.0 (16) | C1—O3—Cd1 | 92.7 (8) |
| O1—C6—C8 | 106.1 (13) | Cd1i—O3—Cd1 | 110.9 (4) |
| C4—C6—H6A | 112.5 | C2—O4—Cd1iii | 92.6 (7) |
| O1—C6—H6A | 112.5 | C2—O5—Cd1iii | 91.9 (6) |
| O2—C1—C3—C5 | −67.4 (19) | C10—C9—N3—Cd1 | −170.3 (9) |
| O3—C1—C3—C5 | 106.4 (18) | N1—Cd1—N3—C11 | −105 (3) |
| O2—C1—C3—C4 | 60.1 (19) | O3i—Cd1—N3—C11 | 105.9 (9) |
| O3—C1—C3—C4 | −126.2 (15) | O5ii—Cd1—N3—C11 | −100.2 (9) |
| O4—C2—C4—C6 | −15 (2) | O4ii—Cd1—N3—C11 | −152.6 (9) |
| O5—C2—C4—C6 | 173.5 (13) | O2—Cd1—N3—C11 | −11.6 (9) |
| O4—C2—C4—C3 | −140.1 (15) | O3—Cd1—N3—C11 | 37.0 (9) |
| O5—C2—C4—C3 | 48 (2) | N1—Cd1—N3—C9 | 64 (3) |
| C5—C3—C4—C6 | 3.3 (19) | O3i—Cd1—N3—C9 | −84.9 (10) |
| C1—C3—C4—C6 | −129.2 (15) | O5ii—Cd1—N3—C9 | 69.0 (10) |
| C5—C3—C4—C2 | 138.9 (16) | O4ii—Cd1—N3—C9 | 16.6 (10) |
| C1—C3—C4—C2 | 6(2) | O2—Cd1—N3—C9 | 157.6 (10) |
| C1—C3—C5—O1 | 91.7 (15) | O3—Cd1—N3—C9 | −153.8 (10) |
| C4—C3—C5—O1 | −39.6 (16) | C9—C10—N4—C11 | 0.0 (15) |
| C1—C3—C5—C7 | −160.0 (14) | N3—C11—N4—C10 | 0.2 (14) |
| C4—C3—C5—C7 | 68.7 (17) | C4—C6—O1—C5 | −60.7 (15) |
| C2—C4—C6—O1 | −99.0 (17) | C8—C6—O1—C5 | 56.7 (14) |
| C3—C4—C6—O1 | 34.8 (16) | C3—C5—O1—C6 | 60.4 (13) |
| C2—C4—C6—C8 | 149.0 (14) | C7—C5—O1—C6 | −47.8 (13) |
| C3—C4—C6—C8 | −77.2 (16) | O3—C1—O2—Cd1 | −11.1 (12) |
| C3—C5—C7—C8 | −76.9 (17) | C3—C1—O2—Cd1 | 162.8 (10) |
| O1—C5—C7—C8 | 23.5 (16) | N1—Cd1—O2—C1 | −99.8 (7) |
| C5—C7—C8—C6 | 10.1 (16) | N3—Cd1—O2—C1 | 86.1 (7) |
| C4—C6—C8—C7 | 65.5 (17) | O3i—Cd1—O2—C1 | −7.6 (8) |
| O1—C6—C8—C7 | −42.4 (17) | O5ii—Cd1—O2—C1 | 170.6 (7) |
| N3—C9—C10—N4 | −0.3 (15) | O4ii—Cd1—O2—C1 | 174.6 (7) |
| N1—C12—C13—N2 | 0.7 (14) | O3—Cd1—O2—C1 | 6.2 (7) |
| N2—C14—N1—C12 | −0.4 (13) | O2—C1—O3—Cd1i | 153.0 (13) |
| N2—C14—N1—Cd1 | 169.4 (8) | C3—C1—O3—Cd1i | −21 (2) |
| C13—C12—N1—C14 | −0.2 (13) | O2—C1—O3—Cd1 | 10.5 (11) |
| C13—C12—N1—Cd1 | −169.3 (8) | C3—C1—O3—Cd1 | −163.4 (10) |
| N3—Cd1—N1—C14 | −18 (3) | N1—Cd1—O3—C1 | 70.6 (7) |
| O3i—Cd1—N1—C14 | 131.6 (9) | N3—Cd1—O3—C1 | −105.8 (7) |
| O5ii—Cd1—N1—C14 | −22.2 (9) | O3i—Cd1—O3—C1 | 160.9 (9) |
| O4ii—Cd1—N1—C14 | 30.1 (9) | O5ii—Cd1—O3—C1 | −28.7 (8) |
| O2—Cd1—N1—C14 | −111.2 (9) | O4ii—Cd1—O3—C1 | −152.6 (11) |
| O3—Cd1—N1—C14 | −158.9 (9) | O2—Cd1—O3—C1 | −6.0 (6) |
| N3—Cd1—N1—C12 | 150 (3) | N1—Cd1—O3—Cd1i | −90.3 (4) |
| O3i—Cd1—N1—C12 | −61.1 (10) | N3—Cd1—O3—Cd1i | 93.3 (4) |
| O5ii—Cd1—N1—C12 | 145.1 (9) | O3i—Cd1—O3—Cd1i | 0.0 |
| O4ii—Cd1—N1—C12 | −162.7 (9) | O5ii—Cd1—O3—Cd1i | 170.4 (3) |
| O2—Cd1—N1—C12 | 56.1 (9) | O4ii—Cd1—O3—Cd1i | 46.5 (14) |
| O3—Cd1—N1—C12 | 8.4 (10) | O2—Cd1—O3—Cd1i | −166.9 (5) |
| N1—C14—N2—C13 | 0.8 (14) | O5—C2—O4—Cd1iii | 9.0 (13) |
| C12—C13—N2—C14 | −0.9 (14) | C4—C2—O4—Cd1iii | −162.4 (13) |
| N4—C11—N3—C9 | −0.4 (13) | O4—C2—O5—Cd1iii | −9.0 (13) |
| N4—C11—N3—Cd1 | 171.2 (7) | C4—C2—O5—Cd1iii | 163.0 (11) |
| C10—C9—N3—C11 | 0.4 (14) |
| H··· | ||||
| N2—H2A···O5iv | 0.86 | 2.09 | 2.830 (12) | 144 |
| N4—H4B···O1iii | 0.86 | 2.44 | 3.012 (17) | 125 |
| N4—H4B···O2iii | 0.86 | 2.05 | 2.818 (13) | 149 |
| C6—H6A···O4 | 0.98 | 2.56 | 2.92 (2) | 101 |
| C11—H11A···O5 | 0.93 | 2.34 | 3.239 (15) | 164 |
| C14—H14A···O2ii | 0.93 | 2.55 | 3.358 (15) | 145 |
| C12—H12A···Cg5i | 0.93 | 2.76 | 3.565 (14) | 145 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.09 | 2.830 (12) | 144 |
| N4—H4 | 0.86 | 2.44 | 3.012 (17) | 125 |
| N4—H4 | 0.86 | 2.05 | 2.818 (13) | 149 |
| C6—H6 | 0.98 | 2.56 | 2.92 (2) | 101 |
| C11—H11 | 0.93 | 2.34 | 3.239 (15) | 164 |
| C14—H14 | 0.93 | 2.55 | 3.358 (15) | 145 |
| C12—H12 | 0.93 | 2.76 | 3.565 (14) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg5 is the centroid of the N3/N4/C9–C11 ring.