Literature DB >> 21582710

Poly[bis-(1H-imidazole)(μ(3)-7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxyl-ato)cadmium(II)].

Na Wang1, Yan-Jun Wang, Qiu-Yue Lin.   

Abstract

The title compound, [Cd(C(8)H(8)O(5))(C(3)H(4)N(2))(2)](n), was synthesized by the reaction of 7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxylic anhydride, cadmium acetate and imidazole. The Cd(II) atom is seven-coordinated in a distorted penta-gonal-bipyramidal configuration by five O atoms from carboxyl-ate groups of three 7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxylate ligands and two N atoms from two imidazole ligands. The crystal structure is stabilized by N-H⋯O and C-H⋯O hydrogen-bonding and C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21582710      PMCID: PMC2969310          DOI: 10.1107/S1600536809021801

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

7-Oxabicyclo­[2.2.1]heptane-2,3-dicarboxylic anhydride (nor­cantharidin) is a lower toxicity anti­cancer drug, see: Shimi et al. (1982 ▶). For cobalt complexes of norcantharidin, see: Wang et al. (1988 ▶) and of imidazole, see: Furenlid et al. (1986 ▶); Zhu et al. (2003 ▶).

Experimental

Crystal data

[Cd(C8H8O5)(C3H4N2)2] M = 432.71 Monoclinic, a = 12.5374 (16) Å b = 9.6596 (13) Å c = 14.1635 (17) Å β = 112.761 (7)° V = 1581.7 (3) Å3 Z = 4 Mo Kα radiation μ = 1.41 mm−1 T = 296 K 0.12 × 0.06 × 0.05 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.900, T max = 0.932 10791 measured reflections 2777 independent reflections 2310 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.216 S = 1.05 2777 reflections 217 parameters 234 restraints H-atom parameters constrained Δρmax = 2.92 e Å−3 Δρmin = −1.26 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809021801/at2804sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021801/at2804Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C8H8O5)(C3H4N2)2]F(000) = 864
Mr = 432.71Dx = 1.817 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3164 reflections
a = 12.5374 (16) Åθ = 1.8–25.0°
b = 9.6596 (13) ŵ = 1.41 mm1
c = 14.1635 (17) ÅT = 296 K
β = 112.761 (7)°Block, colourless
V = 1581.7 (3) Å30.12 × 0.06 × 0.05 mm
Z = 4
Bruker APEXII area-detector diffractometer2777 independent reflections
Radiation source: fine-focus sealed tube2310 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→13
Tmin = 0.900, Tmax = 0.932k = −9→11
10791 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.216H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1141P)2 + 20.9278P] where P = (Fo2 + 2Fc2)/3
2777 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 2.92 e Å3
234 restraintsΔρmin = −1.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.56124 (6)0.12069 (7)0.41461 (5)0.0343 (3)
C10.3497 (10)−0.0468 (14)0.3258 (10)0.054 (2)
C20.2845 (10)−0.2300 (14)0.1484 (11)0.057 (2)
C30.2272 (12)−0.0995 (16)0.2847 (13)0.072 (2)
H3A0.2224−0.16100.33800.086*
C40.1928 (11)−0.1894 (18)0.1877 (12)0.073 (2)
H4A0.1672−0.27720.20660.088*
C50.1415 (13)−0.0051 (18)0.2677 (13)0.083 (3)
H5A0.16170.07620.31260.099*
C60.0917 (13)−0.1236 (17)0.1263 (14)0.080 (3)
H6A0.0743−0.13630.05320.096*
C70.0267 (13)−0.0946 (18)0.2649 (14)0.083 (3)
H7A0.0478−0.16470.31800.100*
H7B−0.0321−0.03460.27150.100*
C8−0.0141 (13)−0.1606 (19)0.1553 (13)0.081 (3)
H8A−0.0851−0.11870.10840.097*
H8B−0.0246−0.25990.15730.097*
C90.7916 (10)−0.0684 (14)0.4431 (9)0.054 (3)
H9A0.8443−0.00220.48150.064*
C100.8193 (11)−0.1875 (15)0.4113 (10)0.060 (3)
H10A0.8935−0.21870.42310.072*
C110.6339 (10)−0.1723 (13)0.3608 (9)0.051 (2)
H11A0.5560−0.19530.32990.061*
C120.3507 (10)0.3209 (13)0.4170 (9)0.050 (2)
H12A0.31390.25180.43880.060*
C130.3119 (11)0.4481 (13)0.3898 (10)0.055 (3)
H13A0.24320.48450.38970.066*
C140.4742 (10)0.4295 (13)0.3745 (9)0.050 (2)
H14A0.53960.45090.36160.060*
N10.4556 (8)0.3092 (9)0.4073 (6)0.0389 (19)
N20.3900 (9)0.5160 (10)0.3620 (8)0.055 (3)
H2A0.38490.59990.34040.066*
N30.6737 (7)−0.0577 (9)0.4109 (6)0.0385 (19)
N40.7219 (10)−0.2529 (10)0.3601 (8)0.058 (3)
H4B0.7153−0.33260.33130.070*
O10.1232 (10)0.0205 (13)0.1600 (10)0.102 (3)
O20.3853 (6)0.0273 (8)0.2739 (6)0.0493 (16)
O30.4150 (8)−0.0683 (11)0.4176 (6)0.064 (2)
O40.2664 (7)−0.2321 (9)0.0572 (7)0.0558 (18)
O50.3769 (6)−0.2772 (8)0.2164 (5)0.0425 (15)
U11U22U33U12U13U23
Cd10.0361 (5)0.0323 (5)0.0371 (5)0.0007 (3)0.0170 (3)0.0026 (3)
C10.042 (4)0.063 (4)0.067 (4)−0.001 (3)0.032 (3)−0.023 (4)
C20.039 (4)0.064 (5)0.076 (5)−0.007 (4)0.032 (4)−0.028 (4)
C30.049 (4)0.082 (5)0.089 (5)−0.006 (4)0.031 (4)−0.034 (4)
C40.048 (4)0.083 (5)0.091 (5)−0.003 (4)0.029 (4)−0.035 (4)
C50.059 (4)0.087 (5)0.095 (5)−0.004 (4)0.023 (4)−0.029 (4)
C60.054 (4)0.085 (5)0.094 (5)−0.004 (4)0.021 (4)−0.030 (4)
C70.055 (5)0.097 (5)0.097 (5)−0.004 (4)0.029 (4)−0.030 (5)
C80.055 (4)0.091 (5)0.096 (5)−0.003 (4)0.028 (4)−0.032 (5)
C90.041 (5)0.056 (6)0.060 (5)0.011 (5)0.014 (4)0.002 (5)
C100.047 (5)0.064 (6)0.067 (6)0.016 (5)0.018 (5)0.001 (5)
C110.043 (4)0.052 (5)0.057 (5)0.006 (4)0.020 (4)−0.001 (4)
C120.044 (5)0.053 (5)0.064 (5)0.003 (4)0.033 (4)0.000 (4)
C130.051 (5)0.052 (5)0.068 (6)0.007 (5)0.029 (5)0.003 (5)
C140.050 (5)0.050 (5)0.057 (5)−0.002 (5)0.029 (4)0.001 (5)
N10.049 (5)0.030 (4)0.041 (4)−0.001 (4)0.021 (4)−0.003 (4)
N20.071 (7)0.032 (5)0.065 (6)0.014 (5)0.031 (5)0.013 (4)
N30.037 (5)0.037 (5)0.041 (5)0.003 (4)0.015 (4)0.001 (4)
N40.087 (8)0.038 (5)0.054 (6)0.017 (5)0.031 (5)−0.007 (4)
O10.081 (5)0.090 (6)0.109 (6)0.012 (5)0.006 (5)0.000 (5)
O20.046 (3)0.050 (4)0.060 (4)0.001 (3)0.029 (3)0.006 (3)
O30.066 (5)0.086 (5)0.046 (4)0.018 (4)0.028 (3)0.004 (4)
O40.050 (4)0.055 (4)0.060 (4)0.011 (3)0.019 (3)−0.002 (3)
O50.045 (3)0.042 (4)0.046 (3)0.003 (3)0.024 (3)−0.005 (3)
Cd1—N12.230 (9)C7—H7A0.9700
Cd1—N32.240 (9)C7—H7B0.9700
Cd1—O3i2.333 (8)C8—H8A0.9700
Cd1—O5ii2.476 (7)C8—H8B0.9700
Cd1—O4ii2.487 (8)C9—C101.329 (18)
Cd1—O22.500 (8)C9—N31.372 (14)
Cd1—O32.599 (10)C9—H9A0.9300
C1—O21.226 (15)C10—N41.316 (17)
C1—O31.258 (15)C10—H10A0.9300
C1—C31.506 (17)C11—N31.305 (15)
C2—O41.222 (15)C11—N41.354 (15)
C2—O51.271 (15)C11—H11A0.9300
C2—C41.510 (17)C12—C131.323 (18)
C3—C51.36 (2)C12—N11.379 (14)
C3—C41.540 (19)C12—H12A0.9300
C3—H3A0.9800C13—N21.357 (16)
C4—C61.38 (2)C13—H13A0.9300
C4—H4A0.9800C14—N11.306 (15)
C5—O11.47 (2)C14—N21.304 (15)
C5—C71.67 (2)C14—H14A0.9300
C5—H5A0.9800N2—H2A0.8600
C6—O11.476 (18)N4—H4B0.8600
C6—C81.57 (2)O3—Cd1i2.333 (8)
C6—H6A0.9800O4—Cd1iii2.487 (8)
C7—C81.57 (2)O5—Cd1iii2.476 (7)
N1—Cd1—N3174.2 (3)C8—C6—H6A112.5
N1—Cd1—O3i93.7 (3)C8—C7—C5100.5 (13)
N3—Cd1—O3i91.4 (3)C8—C7—H7A111.7
N1—Cd1—O5ii89.6 (3)C5—C7—H7A111.7
N3—Cd1—O5ii84.6 (3)C8—C7—H7B111.7
O3i—Cd1—O5ii153.7 (3)C5—C7—H7B111.7
N1—Cd1—O4ii90.2 (3)H7A—C7—H7B109.4
N3—Cd1—O4ii85.8 (3)C7—C8—C6100.4 (12)
O3i—Cd1—O4ii101.5 (3)C7—C8—H8A111.7
O5ii—Cd1—O4ii52.3 (3)C6—C8—H8A111.7
N1—Cd1—O286.1 (3)C7—C8—H8B111.7
N3—Cd1—O294.2 (3)C6—C8—H8B111.7
O3i—Cd1—O2117.3 (3)H8A—C8—H8B109.5
O5ii—Cd1—O289.0 (2)C10—C9—N3110.0 (12)
O4ii—Cd1—O2141.1 (3)C10—C9—H9A125.0
N1—Cd1—O399.5 (3)N3—C9—H9A125.0
N3—Cd1—O385.1 (3)N4—C10—C9107.1 (11)
O3i—Cd1—O369.1 (4)N4—C10—H10A126.5
O5ii—Cd1—O3136.0 (3)C9—C10—H10A126.5
O4ii—Cd1—O3166.8 (3)N3—C11—N4110.6 (11)
O2—Cd1—O349.4 (3)N3—C11—H11A124.7
O2—C1—O3118.3 (11)N4—C11—H11A124.7
O2—C1—C3121.3 (13)C13—C12—N1107.8 (11)
O3—C1—C3120.1 (13)C13—C12—H12A126.1
O4—C2—O5122.5 (10)N1—C12—H12A126.1
O4—C2—C4122.5 (13)C12—C13—N2107.9 (11)
O5—C2—C4114.5 (12)C12—C13—H13A126.1
C5—C3—C1117.4 (13)N2—C13—H13A126.1
C5—C3—C4106.9 (13)N1—C14—N2111.8 (10)
C1—C3—C4115.3 (11)N1—C14—H14A124.1
C5—C3—H3A105.4N2—C14—H14A124.1
C1—C3—H3A105.4C14—N1—C12105.7 (10)
C4—C3—H3A105.4C14—N1—Cd1124.0 (7)
C6—C4—C2122.0 (16)C12—N1—Cd1129.4 (8)
C6—C4—C3100.0 (12)C14—N2—C13106.8 (10)
C2—C4—C3119.0 (11)C14—N2—H2A126.6
C6—C4—H4A104.6C13—N2—H2A126.6
C2—C4—H4A104.6C11—N3—C9104.6 (10)
C3—C4—H4A104.6C11—N3—Cd1123.6 (7)
C3—C5—O195.3 (13)C9—N3—Cd1131.1 (8)
C3—C5—C7105.8 (14)C10—N4—C11107.7 (10)
O1—C5—C7106.0 (12)C10—N4—H4B126.1
C3—C5—H5A115.8C11—N4—H4B126.1
O1—C5—H5A115.8C6—O1—C595.3 (13)
C7—C5—H5A115.8C1—O2—Cd198.4 (7)
C4—C6—O199.4 (12)C1—O3—Cd1i149.9 (8)
C4—C6—C8113.0 (16)C1—O3—Cd192.7 (8)
O1—C6—C8106.1 (13)Cd1i—O3—Cd1110.9 (4)
C4—C6—H6A112.5C2—O4—Cd1iii92.6 (7)
O1—C6—H6A112.5C2—O5—Cd1iii91.9 (6)
O2—C1—C3—C5−67.4 (19)C10—C9—N3—Cd1−170.3 (9)
O3—C1—C3—C5106.4 (18)N1—Cd1—N3—C11−105 (3)
O2—C1—C3—C460.1 (19)O3i—Cd1—N3—C11105.9 (9)
O3—C1—C3—C4−126.2 (15)O5ii—Cd1—N3—C11−100.2 (9)
O4—C2—C4—C6−15 (2)O4ii—Cd1—N3—C11−152.6 (9)
O5—C2—C4—C6173.5 (13)O2—Cd1—N3—C11−11.6 (9)
O4—C2—C4—C3−140.1 (15)O3—Cd1—N3—C1137.0 (9)
O5—C2—C4—C348 (2)N1—Cd1—N3—C964 (3)
C5—C3—C4—C63.3 (19)O3i—Cd1—N3—C9−84.9 (10)
C1—C3—C4—C6−129.2 (15)O5ii—Cd1—N3—C969.0 (10)
C5—C3—C4—C2138.9 (16)O4ii—Cd1—N3—C916.6 (10)
C1—C3—C4—C26(2)O2—Cd1—N3—C9157.6 (10)
C1—C3—C5—O191.7 (15)O3—Cd1—N3—C9−153.8 (10)
C4—C3—C5—O1−39.6 (16)C9—C10—N4—C110.0 (15)
C1—C3—C5—C7−160.0 (14)N3—C11—N4—C100.2 (14)
C4—C3—C5—C768.7 (17)C4—C6—O1—C5−60.7 (15)
C2—C4—C6—O1−99.0 (17)C8—C6—O1—C556.7 (14)
C3—C4—C6—O134.8 (16)C3—C5—O1—C660.4 (13)
C2—C4—C6—C8149.0 (14)C7—C5—O1—C6−47.8 (13)
C3—C4—C6—C8−77.2 (16)O3—C1—O2—Cd1−11.1 (12)
C3—C5—C7—C8−76.9 (17)C3—C1—O2—Cd1162.8 (10)
O1—C5—C7—C823.5 (16)N1—Cd1—O2—C1−99.8 (7)
C5—C7—C8—C610.1 (16)N3—Cd1—O2—C186.1 (7)
C4—C6—C8—C765.5 (17)O3i—Cd1—O2—C1−7.6 (8)
O1—C6—C8—C7−42.4 (17)O5ii—Cd1—O2—C1170.6 (7)
N3—C9—C10—N4−0.3 (15)O4ii—Cd1—O2—C1174.6 (7)
N1—C12—C13—N20.7 (14)O3—Cd1—O2—C16.2 (7)
N2—C14—N1—C12−0.4 (13)O2—C1—O3—Cd1i153.0 (13)
N2—C14—N1—Cd1169.4 (8)C3—C1—O3—Cd1i−21 (2)
C13—C12—N1—C14−0.2 (13)O2—C1—O3—Cd110.5 (11)
C13—C12—N1—Cd1−169.3 (8)C3—C1—O3—Cd1−163.4 (10)
N3—Cd1—N1—C14−18 (3)N1—Cd1—O3—C170.6 (7)
O3i—Cd1—N1—C14131.6 (9)N3—Cd1—O3—C1−105.8 (7)
O5ii—Cd1—N1—C14−22.2 (9)O3i—Cd1—O3—C1160.9 (9)
O4ii—Cd1—N1—C1430.1 (9)O5ii—Cd1—O3—C1−28.7 (8)
O2—Cd1—N1—C14−111.2 (9)O4ii—Cd1—O3—C1−152.6 (11)
O3—Cd1—N1—C14−158.9 (9)O2—Cd1—O3—C1−6.0 (6)
N3—Cd1—N1—C12150 (3)N1—Cd1—O3—Cd1i−90.3 (4)
O3i—Cd1—N1—C12−61.1 (10)N3—Cd1—O3—Cd1i93.3 (4)
O5ii—Cd1—N1—C12145.1 (9)O3i—Cd1—O3—Cd1i0.0
O4ii—Cd1—N1—C12−162.7 (9)O5ii—Cd1—O3—Cd1i170.4 (3)
O2—Cd1—N1—C1256.1 (9)O4ii—Cd1—O3—Cd1i46.5 (14)
O3—Cd1—N1—C128.4 (10)O2—Cd1—O3—Cd1i−166.9 (5)
N1—C14—N2—C130.8 (14)O5—C2—O4—Cd1iii9.0 (13)
C12—C13—N2—C14−0.9 (14)C4—C2—O4—Cd1iii−162.4 (13)
N4—C11—N3—C9−0.4 (13)O4—C2—O5—Cd1iii−9.0 (13)
N4—C11—N3—Cd1171.2 (7)C4—C2—O5—Cd1iii163.0 (11)
C10—C9—N3—C110.4 (14)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O5iv0.862.092.830 (12)144
N4—H4B···O1iii0.862.443.012 (17)125
N4—H4B···O2iii0.862.052.818 (13)149
C6—H6A···O40.982.562.92 (2)101
C11—H11A···O50.932.343.239 (15)164
C14—H14A···O2ii0.932.553.358 (15)145
C12—H12A···Cg5i0.932.763.565 (14)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O5i0.862.092.830 (12)144
N4—H4B⋯O1ii0.862.443.012 (17)125
N4—H4B⋯O2ii0.862.052.818 (13)149
C6—H6A⋯O40.982.562.92 (2)101
C11—H11A⋯O50.932.343.239 (15)164
C14—H14A⋯O2iii0.932.553.358 (15)145
C12—H12ACg5iv0.932.763.565 (14)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg5 is the centroid of the N3/N4/C9–C11 ring.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A new antitumour substance, 7-oxabicyclo (2.2.1)-5-heptene-2,3-dicarboxylic anhydride.

Authors:  I R Shimi; Z Zaki; S Shoukry; A M Medhat
Journal:  Eur J Cancer Clin Oncol       Date:  1982-08
  2 in total
  1 in total

1.  Poly[[(2,2'-bipyridine)(μ(3)-7-oxabicyclo-[2.2.1]heptane-2,3-dicarboxyl-ato)cadmium] monohydrate].

Authors:  Ling-Ling Zhang; Shi-Kun Li; Jie Feng; Qiu-Yue Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  1 in total

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