Literature DB >> 21582686

catena-Poly[lead(II)-[μ-2,4-diamino-6-(piperidin-1-yl)pyrimidine N-oxide-κO:O]di-μ-iodido].

Maryam Ranjbar, S Heidar Mahmoudi Najafi, Seik Weng Ng.   

Abstract

The N-oxide O atom of the minoxidil unit in the 1/1 adduct with lead(II) iodide, [PbI(2)(C(9)H(15)N(5)O)](n), bridges two Pb(II) atoms, as do each of the I atoms. The bridging inter-actions give rise to a linear chain motif that propagates along the a axis of the ortho-rhom-bic unit cell. The coordination sphere around the six-coordinate Pb(II) atom is a distorted ψ-monocapped octa-hedron in which the stereochemically active lone pair caps one of the faces defined by the O and I atoms forming the longer Pb-O or Pb-I bonds. The Pb(II) atom lies on a mirror plane; the mirror plane is perpendicular to the pyrimidine ring and it bis-ects the piperidine ring. The aromatic ring is disordered about the mirror plane with respect to the 1-nitro-gen and 5-carbon atoms.

Entities:  

Year:  2009        PMID: 21582686      PMCID: PMC2969437          DOI: 10.1107/S1600536809020972

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of minoxidil, see: Akama et al. (2004 ▶); Martín-Islán et al. (2008 ▶).

Experimental

Crystal data

[PbI2(C9H15N5O)] M = 670.25 Orthorhombic, a = 8.1010 (1) Å b = 13.5126 (2) Å c = 14.0140 (2) Å V = 1534.05 (4) Å3 Z = 4 Mo Kα radiation μ = 15.02 mm−1 T = 140 K 0.20 × 0.10 × 0.05 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.153, T max = 0.521 (expected range = 0.139–0.472) 10101 measured reflections 1837 independent reflections 1752 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.018 wR(F 2) = 0.043 S = 1.05 1837 reflections 91 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.90 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809020972/tk2471sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020972/tk2471Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PbI2(C9H15N5O)]F(000) = 1200
Mr = 670.25Dx = 2.902 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 5726 reflections
a = 8.1010 (1) Åθ = 2.9–28.3°
b = 13.5126 (2) ŵ = 15.02 mm1
c = 14.0140 (2) ÅT = 140 K
V = 1534.05 (4) Å3Prism, yellow
Z = 40.20 × 0.10 × 0.05 mm
Bruker SMART APEX diffractometer1837 independent reflections
Radiation source: fine-focus sealed tube1752 reflections with I > 2σ(I)
graphiteRint = 0.028
ω scansθmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.153, Tmax = 0.521k = −17→17
10101 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.018Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.043H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0233P)2 + 1.8105P] where P = (Fo2 + 2Fc2)/3
1837 reflections(Δ/σ)max = 0.001
91 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.90 e Å3
xyzUiso*/UeqOcc. (<1)
Pb10.55277 (2)0.75000.769395 (12)0.01565 (6)
I10.26714 (3)0.588041 (17)0.831700 (16)0.02101 (7)
O10.3482 (4)0.75000.6436 (2)0.0171 (7)
N10.3822 (5)0.75000.5481 (3)0.0137 (8)
N20.4236 (4)0.6615 (2)0.4053 (2)0.0184 (6)0.50
N30.3560 (4)0.5806 (2)0.5498 (2)0.0237 (7)
H310.35650.52260.52130.028*
H320.33400.58470.61120.028*
N40.4716 (6)0.75000.2638 (3)0.0187 (9)
C10.3887 (4)0.6625 (3)0.5000 (2)0.0183 (7)
C20.4236 (4)0.6615 (2)0.4053 (2)0.0184 (6)0.50
H20.43520.60070.37180.022*0.50
C30.4417 (6)0.75000.3590 (3)0.0173 (9)
C40.5041 (5)0.6591 (3)0.2101 (3)0.0224 (7)
H4A0.47320.60100.24930.027*
H4B0.62340.65440.19560.027*
C50.4058 (5)0.6583 (3)0.1176 (3)0.0280 (9)
H5A0.43670.59920.07980.034*
H5B0.28670.65350.13260.034*
C60.4363 (8)0.75000.0587 (4)0.0350 (14)
H6A0.55170.75000.03540.042*
H6B0.36210.75000.00260.042*
U11U22U33U12U13U23
Pb10.01521 (10)0.01598 (10)0.01577 (10)0.000−0.00072 (6)0.000
I10.02066 (14)0.01606 (12)0.02631 (12)−0.00058 (9)0.00187 (9)0.00768 (8)
O10.0150 (17)0.0263 (18)0.0099 (13)0.0000.0015 (12)0.000
N10.0143 (19)0.0163 (19)0.0105 (16)0.000−0.0019 (14)0.000
N20.0168 (16)0.0230 (17)0.0155 (14)−0.0007 (13)0.0001 (12)−0.0035 (12)
N30.0270 (17)0.0148 (15)0.0294 (15)−0.0038 (13)−0.0040 (13)−0.0053 (12)
N40.026 (2)0.018 (2)0.0118 (18)0.0000.0012 (16)0.000
C10.0145 (16)0.0208 (18)0.0197 (16)−0.0011 (14)−0.0007 (13)−0.0043 (13)
C20.0168 (16)0.0230 (17)0.0155 (14)−0.0007 (13)0.0001 (12)−0.0035 (12)
C30.014 (2)0.022 (2)0.016 (2)0.000−0.0009 (18)0.000
C40.0249 (19)0.0211 (18)0.0211 (16)0.0032 (16)0.0036 (15)−0.0038 (14)
C50.025 (2)0.036 (2)0.0226 (18)−0.0012 (17)−0.0035 (15)−0.0130 (16)
C60.039 (4)0.051 (4)0.014 (2)0.000−0.006 (2)0.000
Pb1—O12.419 (3)N4—C31.356 (6)
Pb1—O1i2.686 (3)N4—C41.464 (4)
Pb1—I13.3024 (3)N4—C4iii1.464 (4)
Pb1—I1ii3.1325 (3)C3—C2iii1.368 (4)
Pb1—I1i3.1325 (3)C3—N2iii1.368 (4)
Pb1—I1iii3.3024 (3)C4—C51.522 (5)
O1—N11.366 (5)C4—H4A0.9900
N1—C11.363 (4)C4—H4B0.9900
N1—C1iii1.363 (4)C5—C61.509 (5)
N2—C11.358 (4)C5—H5A0.9900
N2—C31.368 (4)C5—H5B0.9900
N3—C11.335 (4)C6—C5iii1.509 (5)
N3—H310.8800C6—H6A0.9900
N3—H320.8800C6—H6B0.9900
O1—Pb1—O1i160.22 (9)C4—N4—C4iii114.1 (4)
O1—Pb1—I1i92.88 (5)N3—C1—N2123.0 (3)
O1i—Pb1—I1i73.21 (5)N3—C1—N1116.9 (3)
O1—Pb1—I1ii92.88 (5)N2—C1—N1120.1 (3)
O1i—Pb1—I1ii73.21 (5)N4—C3—N2119.0 (2)
I1i—Pb1—I1ii88.636 (10)N4—C3—C2iii119.0 (2)
O1—Pb1—I173.30 (5)N2—C3—C2iii121.9 (4)
O1i—Pb1—I1120.29 (4)N4—C3—N2iii119.0 (2)
I1i—Pb1—I192.581 (7)N2—C3—N2iii121.9 (4)
I1ii—Pb1—I1166.169 (8)C2iii—C3—N2iii0.0 (3)
O1—Pb1—I1iii73.30 (5)N4—C4—C5110.5 (3)
O1i—Pb1—I1iii120.29 (4)N4—C4—H4A109.6
I1i—Pb1—I1iii166.169 (8)C5—C4—H4A109.6
I1ii—Pb1—I1iii92.581 (7)N4—C4—H4B109.6
I1—Pb1—I1iii83.011 (9)C5—C4—H4B109.6
Pb1iv—I1—Pb178.806 (5)H4A—C4—H4B108.1
N1—O1—Pb1125.2 (3)C6—C5—C4112.0 (4)
N1—O1—Pb1iv128.6 (3)C6—C5—H5A109.2
Pb1—O1—Pb1iv106.25 (11)C4—C5—H5A109.2
O1—N1—C1119.5 (2)C6—C5—H5B109.2
O1—N1—C1iii119.5 (2)C4—C5—H5B109.2
C1—N1—C1iii120.5 (4)H5A—C5—H5B107.9
C1—N2—C3118.5 (3)C5iii—C6—C5110.4 (4)
C1—N3—H31120.0C5iii—C6—H6A109.6
C1—N3—H32120.0C5—C6—H6A109.6
H31—N3—H32120.0C5iii—C6—H6B109.6
C3—N4—C4122.51 (19)C5—C6—H6B109.6
C3—N4—C4iii122.51 (19)H6A—C6—H6B108.1
O1—Pb1—I1—Pb1iv−35.49 (5)C3—N2—C1—N3174.6 (4)
O1i—Pb1—I1—Pb1iv160.24 (6)C3—N2—C1—N1−3.9 (5)
I1i—Pb1—I1—Pb1iv−127.726 (10)O1—N1—C1—N31.9 (5)
I1ii—Pb1—I1—Pb1iv−32.94 (2)C1iii—N1—C1—N3−169.9 (3)
I1iii—Pb1—I1—Pb1iv39.115 (7)O1—N1—C1—N2−179.5 (3)
O1i—Pb1—O1—N10.000 (2)C1iii—N1—C1—N28.7 (7)
I1i—Pb1—O1—N1−44.389 (6)C4—N4—C3—N2−7.1 (7)
I1ii—Pb1—O1—N144.389 (6)C4iii—N4—C3—N2−175.6 (4)
I1—Pb1—O1—N1−136.222 (16)C4—N4—C3—C2iii175.6 (4)
I1iii—Pb1—O1—N1136.222 (17)C4iii—N4—C3—C2iii7.1 (7)
O1i—Pb1—O1—Pb1iv180.0C4—N4—C3—N2iii175.6 (4)
I1i—Pb1—O1—Pb1iv135.611 (6)C4iii—N4—C3—N2iii7.1 (7)
I1ii—Pb1—O1—Pb1iv−135.611 (6)C1—N2—C3—N4−178.0 (4)
I1—Pb1—O1—Pb1iv43.778 (16)C1—N2—C3—C2iii−0.8 (7)
I1iii—Pb1—O1—Pb1iv−43.778 (16)C1—N2—C3—N2iii−0.8 (7)
Pb1—O1—N1—C194.1 (3)C3—N4—C4—C5134.8 (5)
Pb1iv—O1—N1—C1−85.9 (3)C4iii—N4—C4—C5−55.8 (6)
Pb1—O1—N1—C1iii−94.1 (3)N4—C4—C5—C654.1 (5)
Pb1iv—O1—N1—C1iii85.9 (3)C4—C5—C6—C5iii−53.5 (6)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure of minoxidil at low temperature and polymorph prediction.

Authors:  Africa P Martín-Islán; Daniel Martín-Ramos; C Ignacio Sainz-Díaz
Journal:  J Pharm Sci       Date:  2008-02       Impact factor: 3.534

  2 in total

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