Literature DB >> 21582679

[5-Chloro-2-hydroxy-N'-(2-oxido-ben-zyl-idene)benzo-hy-dra-zidato]-pyridine-copper(II).

Piyong Li1, Dacheng Li, Xuefeng Shi.   

Abstract

In the title complex, [Cu(C(14)H(9)ClN(2)O(3))(C(5)H(5)N)], the Cu(II) ion exhibits a distorted trans-CuN(2)O(2) square-planar geometry arising from the O,O,N-tridentate ligand and a pyridine mol-ecule. An intra-molecular O-H⋯N hydrogen bond occurs. In the crystal structure, weak inter-molecular C-H⋯π inter-actions generate a chain. The crystal studied was an inversion twin.

Entities:  

Year:  2009        PMID: 21582679      PMCID: PMC2969500          DOI: 10.1107/S1600536809020546

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the coordination chemistry of salicyl­aldehyde-type ligands, see: Bai et al. (2005 ▶). For information on C—H⋯π inter­actions, see: Nishio (2004 ▶).

Experimental

Crystal data

[Cu(C14H9ClN2O3)(C5H5N)] M = 431.32 Monoclinic, a = 23.586 (2) Å b = 4.8268 (6) Å c = 17.88540 (18) Å β = 120.809 (2)° V = 1748.8 (3) Å3 Z = 4 Mo Kα radiation μ = 1.43 mm−1 T = 298 K 0.39 × 0.28 × 0.17 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Siemens, 1996 ▶) T min = 0.606, T max = 0.793 4087 measured reflections 2273 independent reflections 1849 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.116 S = 1.00 2273 reflections 244 parameters 2 restraints H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 725 Friedel pairs Flack parameter: 0.50 (2) Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809020546/hb2989sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020546/hb2989Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C14H9ClN2O3)(C5H5N)]F(000) = 876
Mr = 431.32Dx = 1.638 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
a = 23.586 (2) ÅCell parameters from 1781 reflections
b = 4.8268 (6) Åθ = 2.7–23.7°
c = 17.88540 (18) ŵ = 1.43 mm1
β = 120.809 (2)°T = 298 K
V = 1748.8 (3) Å3Block, green
Z = 40.39 × 0.28 × 0.17 mm
Siemens SMART CCD diffractometer2273 independent reflections
Radiation source: fine-focus sealed tube1849 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Siemens, 1996)h = −28→25
Tmin = 0.606, Tmax = 0.793k = −5→5
4087 measured reflectionsl = −17→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0729P)2 + 0.8658P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2273 reflectionsΔρmax = 0.37 e Å3
244 parametersΔρmin = −0.19 e Å3
2 restraintsAbsolute structure: Flack (1983), 725 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.50 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.18179 (4)0.48947 (15)0.25227 (4)0.0455 (2)
Cl10.00840 (11)1.5179 (4)−0.07019 (13)0.0697 (5)
N10.0517 (3)0.6161 (12)0.2113 (3)0.0462 (13)
N20.1052 (3)0.4396 (12)0.2649 (4)0.0452 (14)
N30.2566 (3)0.5850 (12)0.2378 (4)0.0487 (13)
O10.1235 (2)0.7588 (9)0.1676 (3)0.0519 (11)
O2−0.0618 (2)0.8534 (11)0.1447 (4)0.0721 (14)
H2−0.03190.74700.17640.108*
O30.2275 (2)0.1945 (8)0.3304 (3)0.0509 (11)
C10.0675 (3)0.7694 (13)0.1643 (4)0.0468 (15)
C20.0182 (3)0.9709 (11)0.1036 (4)0.0438 (14)
C3−0.0435 (4)1.0041 (13)0.0969 (5)0.0545 (17)
C4−0.0874 (3)1.1994 (15)0.0388 (5)0.064 (2)
H4−0.12821.22360.03430.076*
C5−0.0718 (3)1.3556 (16)−0.0116 (5)0.0611 (19)
H5−0.10201.4840−0.05030.073*
C6−0.0118 (3)1.3239 (12)−0.0053 (4)0.0502 (15)
C70.0333 (3)1.1330 (13)0.0522 (4)0.0478 (15)
H70.07401.11340.05640.057*
C80.0986 (3)0.2719 (14)0.3155 (4)0.0494 (16)
H80.05900.27520.31500.059*
C90.1478 (3)0.0818 (12)0.3722 (4)0.0450 (15)
C100.2086 (3)0.0513 (12)0.3749 (4)0.0460 (15)
C110.2519 (3)−0.1564 (13)0.4325 (5)0.0539 (16)
H110.2920−0.18600.43570.065*
C120.2365 (3)−0.3133 (13)0.4832 (4)0.0576 (17)
H120.2661−0.44720.51970.069*
C130.1771 (4)−0.2753 (13)0.4808 (4)0.0579 (19)
H130.1671−0.37970.51620.069*
C140.1341 (4)−0.0825 (14)0.4255 (5)0.0540 (16)
H140.0940−0.05870.42300.065*
C150.2503 (4)0.7717 (17)0.1806 (5)0.069 (2)
H150.20910.85200.14520.083*
C160.3020 (4)0.8541 (18)0.1705 (6)0.076 (2)
H160.29580.99050.13020.092*
C170.3626 (3)0.7324 (16)0.2205 (5)0.0635 (18)
H170.39810.78030.21430.076*
C180.3687 (4)0.5405 (17)0.2790 (6)0.080 (3)
H180.40900.45350.31430.095*
C190.3141 (4)0.4733 (15)0.2863 (6)0.068 (2)
H190.31930.34310.32770.082*
U11U22U33U12U13U23
Cu10.0378 (3)0.0493 (4)0.0461 (4)0.0027 (3)0.0192 (3)−0.0002 (4)
Cl10.0771 (12)0.0676 (12)0.0674 (12)0.0189 (9)0.0392 (10)0.0148 (9)
N10.039 (3)0.044 (3)0.046 (3)0.012 (3)0.015 (3)0.000 (3)
N20.036 (3)0.052 (3)0.038 (3)0.000 (3)0.012 (3)−0.010 (3)
N30.045 (3)0.051 (3)0.053 (4)0.002 (3)0.027 (3)0.002 (3)
O10.041 (2)0.061 (3)0.053 (3)0.007 (2)0.024 (2)0.008 (2)
O20.060 (3)0.079 (3)0.090 (4)0.019 (3)0.048 (3)0.013 (3)
O30.045 (2)0.046 (2)0.060 (3)0.007 (2)0.026 (2)0.005 (2)
C10.041 (3)0.045 (3)0.044 (4)0.002 (3)0.013 (3)−0.010 (3)
C20.040 (3)0.044 (3)0.044 (3)0.004 (3)0.019 (3)−0.011 (3)
C30.047 (4)0.057 (4)0.061 (4)0.005 (3)0.028 (3)−0.004 (3)
C40.046 (3)0.068 (5)0.072 (5)0.013 (3)0.027 (4)−0.006 (4)
C50.049 (4)0.062 (4)0.057 (5)0.020 (4)0.016 (3)−0.003 (4)
C60.054 (4)0.045 (4)0.043 (4)0.006 (3)0.019 (3)−0.006 (3)
C70.041 (3)0.049 (4)0.049 (4)0.005 (3)0.019 (3)−0.012 (3)
C80.045 (3)0.054 (4)0.054 (4)−0.004 (3)0.030 (3)−0.009 (3)
C90.053 (3)0.035 (3)0.048 (4)−0.003 (3)0.026 (3)−0.010 (3)
C100.048 (3)0.038 (3)0.048 (4)−0.006 (3)0.021 (3)−0.010 (3)
C110.054 (4)0.040 (3)0.065 (4)−0.005 (3)0.028 (3)−0.006 (3)
C120.060 (4)0.043 (4)0.057 (4)0.003 (3)0.021 (3)−0.001 (3)
C130.069 (4)0.053 (4)0.050 (5)−0.013 (4)0.028 (4)−0.005 (3)
C140.060 (4)0.051 (4)0.053 (4)−0.003 (3)0.031 (3)−0.003 (3)
C150.050 (4)0.083 (5)0.067 (5)0.015 (4)0.024 (4)0.017 (4)
C160.078 (5)0.083 (5)0.084 (6)0.018 (5)0.053 (5)0.031 (5)
C170.052 (4)0.081 (5)0.062 (4)−0.001 (4)0.031 (3)0.000 (4)
C180.047 (4)0.095 (6)0.092 (6)0.009 (4)0.033 (4)0.033 (5)
C190.049 (4)0.074 (6)0.072 (6)0.002 (3)0.024 (4)0.023 (4)
Cu1—O31.897 (4)C7—H70.9300
Cu1—O11.934 (4)C8—C91.419 (9)
Cu1—N21.945 (6)C8—H80.9300
Cu1—N31.965 (6)C9—C141.401 (10)
Cl1—C61.737 (7)C9—C101.416 (9)
N1—C11.310 (9)C10—C111.426 (10)
N1—N21.413 (8)C11—C121.364 (10)
N2—C81.282 (9)C11—H110.9300
N3—C191.296 (10)C12—C131.393 (10)
N3—C151.313 (9)C12—H120.9300
O1—C11.292 (7)C13—C141.359 (9)
O2—C31.351 (9)C13—H130.9300
O2—H20.8200C14—H140.9300
O3—C101.293 (8)C15—C161.380 (11)
C1—C21.478 (8)C15—H150.9300
C2—C71.386 (10)C16—C171.370 (10)
C2—C31.405 (10)C16—H160.9300
C3—C41.393 (10)C17—C181.349 (11)
C4—C51.362 (11)C17—H170.9300
C4—H40.9300C18—C191.396 (12)
C5—C61.370 (10)C18—H180.9300
C5—H50.9300C19—H190.9300
C6—C71.385 (9)
O3—Cu1—O1171.5 (2)N2—C8—C9124.1 (6)
O3—Cu1—N291.9 (2)N2—C8—H8117.9
O1—Cu1—N281.0 (2)C9—C8—H8117.9
O3—Cu1—N393.6 (2)C14—C9—C10120.1 (6)
O1—Cu1—N393.7 (2)C14—C9—C8117.5 (6)
N2—Cu1—N3173.5 (3)C10—C9—C8122.4 (6)
C1—N1—N2109.1 (5)O3—C10—C9125.8 (6)
C8—N2—N1118.0 (6)O3—C10—C11118.4 (6)
C8—N2—Cu1128.0 (5)C9—C10—C11115.8 (6)
N1—N2—Cu1114.0 (4)C12—C11—C10122.4 (7)
C19—N3—C15118.0 (7)C12—C11—H11118.8
C19—N3—Cu1121.1 (6)C10—C11—H11118.8
C15—N3—Cu1120.8 (5)C11—C12—C13120.8 (6)
C1—O1—Cu1111.3 (4)C11—C12—H12119.6
C3—O2—H2109.5C13—C12—H12119.6
C10—O3—Cu1127.5 (4)C14—C13—C12118.5 (6)
O1—C1—N1124.6 (5)C14—C13—H13120.7
O1—C1—C2117.5 (6)C12—C13—H13120.7
N1—C1—C2117.9 (5)C13—C14—C9122.4 (7)
C7—C2—C3119.1 (6)C13—C14—H14118.8
C7—C2—C1119.0 (6)C9—C14—H14118.8
C3—C2—C1121.9 (6)N3—C15—C16123.0 (7)
O2—C3—C4118.6 (7)N3—C15—H15118.5
O2—C3—C2122.5 (6)C16—C15—H15118.5
C4—C3—C2118.9 (7)C17—C16—C15119.1 (7)
C5—C4—C3121.2 (7)C17—C16—H16120.4
C5—C4—H4119.4C15—C16—H16120.4
C3—C4—H4119.4C18—C17—C16117.6 (7)
C4—C5—C6120.1 (6)C18—C17—H17121.2
C4—C5—H5120.0C16—C17—H17121.2
C6—C5—H5120.0C17—C18—C19119.6 (7)
C5—C6—C7120.3 (7)C17—C18—H18120.2
C5—C6—Cl1120.7 (5)C19—C18—H18120.2
C7—C6—Cl1119.0 (5)N3—C19—C18122.7 (8)
C6—C7—C2120.5 (6)N3—C19—H19118.7
C6—C7—H7119.8C18—C19—H19118.7
C2—C7—H7119.8
C1—N1—N2—C8−179.6 (6)O1—C1—C2—C3−178.1 (6)
C1—N1—N2—Cu11.2 (6)N1—C1—C2—C31.3 (9)
O3—Cu1—N2—C84.3 (6)C7—C2—C3—O2179.9 (6)
O1—Cu1—N2—C8179.6 (6)C7—C2—C3—C4−0.1 (9)
N3—Cu1—N2—C8−143 (2)C1—C2—C3—C4179.5 (6)
O3—Cu1—N2—N1−176.6 (4)O2—C3—C4—C5−179.4 (7)
O1—Cu1—N2—N1−1.2 (4)C4—C5—C6—Cl1179.1 (6)
N3—Cu1—N2—N136 (3)C5—C6—C7—C20.4 (9)
O3—Cu1—N3—C19−9.1 (7)Cl1—C6—C7—C2−178.7 (5)
O1—Cu1—N3—C19175.1 (7)C3—C2—C7—C6−0.4 (9)
N2—Cu1—N3—C19139 (2)C1—C2—C7—C6−180.0 (5)
O3—Cu1—N3—C15173.4 (6)N1—N2—C8—C9179.5 (5)
O1—Cu1—N3—C15−2.5 (6)N2—C8—C9—C14178.1 (6)
N2—Cu1—N3—C15−39 (3)Cu1—O3—C10—C91.9 (9)
O3—Cu1—O1—C134.5 (18)Cu1—O3—C10—C11−177.8 (4)
N2—Cu1—O1—C11.0 (4)C14—C9—C10—O3−178.4 (6)
N3—Cu1—O1—C1−175.1 (4)C8—C9—C10—O32.9 (9)
O1—Cu1—O3—C10−37.5 (19)C14—C9—C10—C111.3 (8)
N2—Cu1—O3—C10−4.5 (5)C8—C9—C10—C11−177.4 (6)
N3—Cu1—O3—C10172.0 (5)O3—C10—C11—C12178.6 (6)
Cu1—O1—C1—N1−0.6 (7)C9—C10—C11—C12−1.0 (9)
Cu1—O1—C1—C2178.7 (4)C8—C9—C14—C13178.5 (6)
N2—N1—C1—O1−0.4 (8)Cu1—N3—C15—C16177.2 (7)
N2—N1—C1—C2−179.7 (5)N3—C15—C16—C171.7 (14)
O1—C1—C2—C71.4 (8)Cu1—N3—C19—C18−178.7 (7)
N1—C1—C2—C7−179.2 (6)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.852.575 (9)147
C16—H16···Cg1i0.932.813.48 (3)130
Table 1

Selected bond lengths (Å)

Cu1—O31.897 (4)
Cu1—O11.934 (4)
Cu1—N21.945 (6)
Cu1—N31.965 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.852.575 (9)147
C16—H16⋯Cg1i0.932.813.48 (3)130

Symmetry code: (i) . Cg1 is the centroid of the C9–C14 ring.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and structural characterization of a nonplanar neutral [36]metallacrown-12 nickel compound [Ni(C13H9N3O2)(CH3OH)]12.

Authors:  Yan Bai; Dong-bin Dang; Chun-ying Duan; You Song; Qing-jin Meng
Journal:  Inorg Chem       Date:  2005-08-22       Impact factor: 5.165

  2 in total

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