Literature DB >> 21582627

2-[1-(2-Hydr-oxy-3-methoxy-benz-yl)-1H-benzimidazol-2-yl]-6-methoxy-phenol methanol 1.13-solvate.

Mohammed H Al-Douh, Hasnah Osman, Shafida A Hamid, Reza Kia, Hoong-Kun Fun.   

Abstract

In the main mol-ecule of the title compound, C(22)H(20)N(2)O(4)·1.13CH(4)O, the dihedral angles between the benzimidazole plane and the two benzene rings are 80.53 (10) and 82.76 (10)°. The solvent mol-ecules are disordered between three positions, with refined occupancies of 0.506 (13), 0.373 (13) and 0.249 (5). The crystal structure is stabilized by inter-molecular O-H⋯O, O-H⋯N and C-H⋯O hydrogen bonds. The crystal studied was a merohedral twin [BASF ratio of 0.917 (1)/0.083 (1)].

Entities:  

Year:  2009        PMID: 21582627      PMCID: PMC2969071          DOI: 10.1107/S1600536809011192

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see Al-Douh et al. (2006 ▶, 2009 ▶). For hydrogen-bond motifs, see Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C22H20N2O4·1.13CH4O M = 412.53 Monoclinic, a = 7.2451 (1) Å b = 11.1482 (2) Å c = 26.2046 (5) Å β = 90.010 (1)° V = 2116.54 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.27 × 0.15 × 0.13 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.976, T max = 0.988 18918 measured reflections 3940 independent reflections 3099 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.122 S = 1.09 3940 reflections 317 parameters 1 restraint H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809011192/cv2535sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011192/cv2535Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H20N2O4·1.13CH4OF(000) = 873
Mr = 412.53Dx = 1.295 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4846 reflections
a = 7.2451 (1) Åθ = 2.9–26.4°
b = 11.1482 (2) ŵ = 0.09 mm1
c = 26.2046 (5) ÅT = 100 K
β = 90.010 (1)°Block, colourless
V = 2116.54 (6) Å30.27 × 0.15 × 0.13 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3940 independent reflections
Radiation source: fine-focus sealed tube3099 reflections with I > 2σ(I)
graphiteRint = 0.040
φ and ω scansθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.976, Tmax = 0.988k = −12→13
18918 measured reflectionsl = −31→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0415P)2 + 1.5448P] where P = (Fo2 + 2Fc2)/3
3940 reflections(Δ/σ)max < 0.001
317 parametersΔρmax = 0.28 e Å3
1 restraintΔρmin = −0.23 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.0363 (2)0.18739 (17)0.00815 (6)0.0272 (4)
H10.03850.1891−0.02310.041*
O20.3146 (2)0.15819 (18)−0.05634 (6)0.0346 (5)
O30.0521 (3)−0.24674 (15)0.09905 (6)0.0282 (4)
H30.0664−0.31960.09710.042*
O40.2424 (3)−0.39894 (16)0.15953 (8)0.0437 (6)
N10.0259 (3)0.31698 (18)0.13518 (7)0.0220 (5)
N2−0.0044 (3)0.11719 (17)0.13178 (7)0.0196 (5)
C1−0.1122 (3)0.2812 (2)0.16904 (9)0.0199 (5)
C2−0.2243 (3)0.3492 (2)0.20124 (9)0.0237 (6)
H2A−0.21610.43240.20190.028*
C3−0.3483 (3)0.2886 (2)0.23220 (9)0.0253 (6)
H3A−0.42320.33210.25430.030*
C4−0.3634 (4)0.1640 (2)0.23092 (9)0.0255 (6)
H4A−0.44790.12640.25230.031*
C5−0.2560 (3)0.0947 (2)0.19875 (9)0.0229 (6)
H5A−0.26660.01160.19770.027*
C6−0.1313 (3)0.1562 (2)0.16799 (8)0.0195 (5)
C70.0860 (3)0.2171 (2)0.11421 (9)0.0198 (5)
C80.2427 (3)0.2062 (2)0.07811 (9)0.0196 (5)
C90.2130 (3)0.1894 (2)0.02649 (9)0.0202 (5)
C100.3634 (4)0.1738 (2)−0.00633 (9)0.0233 (6)
C110.5417 (4)0.1767 (2)0.01214 (10)0.0289 (6)
H11A0.64110.1665−0.00990.035*
C120.5715 (4)0.1951 (3)0.06398 (10)0.0324 (7)
H12A0.69130.19810.07660.039*
C130.4233 (3)0.2090 (2)0.09689 (10)0.0281 (6)
H13A0.44410.22030.13160.034*
C140.0209 (3)−0.0061 (2)0.11471 (9)0.0203 (5)
H14A0.0840−0.00540.08210.024*
H14B−0.0994−0.04230.10950.024*
C150.1298 (3)−0.0828 (2)0.15162 (9)0.0193 (5)
C160.1386 (3)−0.2048 (2)0.14165 (9)0.0210 (5)
C170.2424 (4)−0.2802 (2)0.17332 (10)0.0256 (6)
C180.3361 (4)−0.2327 (2)0.21462 (10)0.0267 (6)
H18A0.4048−0.28250.23580.032*
C190.3274 (3)−0.1111 (2)0.22427 (10)0.0263 (6)
H19A0.3906−0.07930.25200.032*
C200.2259 (3)−0.0364 (2)0.19313 (9)0.0241 (6)
H20A0.22170.04540.19990.029*
C210.4624 (5)0.1568 (4)−0.09260 (11)0.0588 (11)
H21A0.41260.1590−0.12650.088*
H21B0.53370.0849−0.08830.088*
H21C0.54000.2255−0.08730.088*
C220.4019 (4)−0.4674 (3)0.17089 (12)0.0399 (7)
H22A0.5094−0.42610.15870.060*
H22B0.3931−0.54430.15460.060*
H22C0.4112−0.47830.20710.060*
O5A1.0245 (11)0.5263 (4)0.0733 (2)0.034 (2)0.506 (13)
H5A11.02850.48050.09780.051*0.506 (13)
C23A0.8593 (19)0.5039 (7)0.0444 (6)0.082 (5)0.506 (13)
H23A0.85270.42030.03580.123*0.506 (13)
H23B0.86160.55070.01360.123*0.506 (13)
H23C0.75340.52570.06430.123*0.506 (13)
O5B0.9164 (17)0.5416 (6)0.0975 (4)0.048 (4)0.373 (13)
H5B0.99970.49770.08740.072*0.373 (13)
C23B0.739 (3)0.5162 (11)0.0664 (4)0.064 (4)0.373 (13)
H23D0.76330.45470.04170.096*0.373 (13)
H23E0.70070.58810.04930.096*0.373 (13)
H23F0.64290.49000.08910.096*0.373 (13)
O5C0.718 (2)0.4931 (11)0.0088 (4)0.082 (4)0.249 (5)
H5C0.71380.4829−0.02220.123*0.249 (5)
C23C0.537 (3)0.5098 (15)0.0278 (8)0.092 (7)0.249 (5)
H23G0.45420.45690.01020.139*0.249 (5)
H23H0.54010.48940.06330.139*0.249 (5)
H23I0.49570.59110.02390.139*0.249 (5)
U11U22U33U12U13U23
O10.0169 (9)0.0456 (11)0.0192 (9)−0.0011 (8)0.0000 (7)−0.0004 (8)
O20.0215 (10)0.0621 (13)0.0202 (9)−0.0080 (9)0.0070 (8)−0.0083 (9)
O30.0329 (10)0.0216 (9)0.0302 (10)0.0024 (8)−0.0068 (8)−0.0033 (7)
O40.0460 (13)0.0217 (10)0.0633 (14)0.0073 (9)−0.0233 (11)−0.0015 (9)
N10.0227 (11)0.0222 (11)0.0212 (10)−0.0008 (9)0.0010 (9)0.0005 (9)
N20.0197 (11)0.0203 (11)0.0188 (10)0.0011 (9)0.0016 (9)0.0001 (8)
C10.0194 (12)0.0224 (13)0.0179 (11)0.0008 (10)−0.0033 (10)−0.0011 (10)
C20.0222 (13)0.0258 (14)0.0231 (13)0.0033 (11)−0.0044 (11)−0.0039 (11)
C30.0197 (13)0.0343 (15)0.0220 (12)0.0064 (12)0.0010 (11)−0.0048 (11)
C40.0207 (13)0.0348 (15)0.0210 (12)−0.0006 (12)0.0027 (11)0.0019 (11)
C50.0234 (13)0.0231 (13)0.0220 (12)0.0017 (11)0.0002 (11)0.0036 (10)
C60.0175 (12)0.0248 (13)0.0163 (11)0.0047 (11)−0.0010 (10)−0.0020 (10)
C70.0201 (13)0.0212 (13)0.0182 (11)0.0015 (11)−0.0030 (10)0.0011 (10)
C80.0196 (12)0.0187 (12)0.0204 (12)0.0006 (10)0.0020 (10)0.0009 (10)
C90.0157 (12)0.0203 (13)0.0246 (12)0.0003 (10)0.0002 (10)0.0002 (10)
C100.0233 (13)0.0258 (14)0.0208 (12)−0.0035 (11)0.0013 (11)−0.0023 (10)
C110.0192 (13)0.0366 (16)0.0310 (14)0.0028 (12)0.0064 (11)−0.0009 (12)
C120.0162 (13)0.0496 (18)0.0314 (15)0.0010 (13)−0.0038 (12)0.0039 (13)
C130.0231 (14)0.0394 (16)0.0219 (13)0.0032 (12)−0.0023 (11)0.0013 (12)
C140.0204 (12)0.0216 (13)0.0188 (12)0.0004 (11)0.0014 (10)−0.0003 (10)
C150.0154 (12)0.0232 (13)0.0194 (12)−0.0001 (10)0.0051 (10)0.0002 (10)
C160.0170 (12)0.0248 (13)0.0212 (12)−0.0005 (11)0.0032 (10)0.0004 (10)
C170.0237 (13)0.0208 (13)0.0324 (14)−0.0007 (11)−0.0003 (12)0.0039 (11)
C180.0228 (14)0.0280 (15)0.0292 (14)0.0028 (12)−0.0023 (12)0.0102 (11)
C190.0222 (14)0.0315 (15)0.0253 (13)−0.0009 (12)−0.0042 (11)0.0013 (11)
C200.0215 (13)0.0253 (14)0.0254 (13)−0.0003 (11)0.0016 (11)−0.0013 (11)
C210.0388 (19)0.110 (3)0.0275 (16)−0.026 (2)0.0169 (15)−0.0232 (18)
C220.0440 (18)0.0312 (16)0.0445 (17)0.0119 (14)0.0048 (15)0.0037 (13)
O5A0.056 (4)0.016 (2)0.030 (3)−0.007 (2)−0.017 (3)0.0041 (17)
C23A0.108 (9)0.024 (4)0.114 (10)−0.011 (5)−0.075 (8)0.012 (5)
O5B0.064 (7)0.024 (4)0.056 (6)−0.014 (4)−0.034 (6)0.011 (3)
C23B0.109 (12)0.044 (6)0.039 (6)−0.029 (7)0.002 (7)−0.010 (5)
O5C0.125 (12)0.067 (8)0.053 (7)−0.011 (8)−0.017 (8)0.022 (6)
C23C0.090 (15)0.050 (10)0.137 (18)−0.013 (10)−0.052 (14)0.043 (11)
O1—C91.367 (3)C14—H14A0.9700
O1—H10.8200C14—H14B0.9700
O2—C101.368 (3)C15—C161.387 (3)
O2—C211.432 (3)C15—C201.391 (3)
O3—C161.363 (3)C16—C171.400 (4)
O3—H30.8200C17—C181.383 (4)
O4—C171.372 (3)C18—C191.380 (4)
O4—C221.416 (3)C18—H18A0.9300
N1—C71.316 (3)C19—C201.379 (4)
N1—C11.396 (3)C19—H19A0.9300
N2—C71.371 (3)C20—H20A0.9300
N2—C61.391 (3)C21—H21A0.9600
N2—C141.457 (3)C21—H21B0.9600
C1—C21.395 (3)C21—H21C0.9600
C1—C61.401 (3)C22—H22A0.9600
C2—C31.386 (4)C22—H22B0.9600
C2—H2A0.9300C22—H22C0.9600
C3—C41.394 (4)O5A—C23A1.439 (9)
C3—H3A0.9300O5A—H5A10.8200
C4—C51.383 (4)C23A—H23A0.9600
C4—H4A0.9300C23A—H23B0.9600
C5—C61.392 (3)C23A—H23C0.9600
C5—H5A0.9300O5B—C23B1.547 (16)
C7—C81.483 (3)O5B—H5B0.8200
C8—C91.382 (3)C23B—H23D0.9600
C8—C131.398 (4)C23B—H23E0.9600
C9—C101.400 (3)C23B—H23F0.9600
C10—C111.380 (4)O5C—C23C1.41 (2)
C11—C121.390 (4)O5C—H5C0.8200
C11—H11A0.9300C23C—C23Ci1.57 (4)
C12—C131.386 (4)C23C—H23G0.9600
C12—H12A0.9300C23C—H23H0.9597
C13—H13A0.9300C23C—H23I0.9602
C14—C151.513 (3)
C9—O1—H1109.5C16—C15—C14117.3 (2)
C10—O2—C21116.3 (2)C20—C15—C14123.4 (2)
C16—O3—H3109.5O3—C16—C15118.0 (2)
C17—O4—C22117.7 (2)O3—C16—C17121.8 (2)
C7—N1—C1105.1 (2)C15—C16—C17120.2 (2)
C7—N2—C6106.90 (19)O4—C17—C18125.2 (2)
C7—N2—C14127.1 (2)O4—C17—C16115.0 (2)
C6—N2—C14126.0 (2)C18—C17—C16119.8 (2)
C2—C1—N1130.3 (2)C19—C18—C17119.8 (2)
C2—C1—C6119.7 (2)C19—C18—H18A120.1
N1—C1—C6110.0 (2)C17—C18—H18A120.1
C3—C2—C1117.8 (2)C20—C19—C18120.6 (2)
C3—C2—H2A121.1C20—C19—H19A119.7
C1—C2—H2A121.1C18—C19—H19A119.7
C2—C3—C4121.5 (2)C19—C20—C15120.4 (2)
C2—C3—H3A119.3C19—C20—H20A119.8
C4—C3—H3A119.3C15—C20—H20A119.8
C5—C4—C3121.8 (2)O2—C21—H21A109.5
C5—C4—H4A119.1O2—C21—H21B109.5
C3—C4—H4A119.1H21A—C21—H21B109.5
C4—C5—C6116.3 (2)O2—C21—H21C109.5
C4—C5—H5A121.8H21A—C21—H21C109.5
C6—C5—H5A121.8H21B—C21—H21C109.5
N2—C6—C5132.1 (2)O4—C22—H22A109.5
N2—C6—C1105.0 (2)O4—C22—H22B109.5
C5—C6—C1122.9 (2)H22A—C22—H22B109.5
N1—C7—N2112.9 (2)O4—C22—H22C109.5
N1—C7—C8126.1 (2)H22A—C22—H22C109.5
N2—C7—C8120.9 (2)H22B—C22—H22C109.5
C9—C8—C13119.5 (2)O5A—C23A—H23A109.5
C9—C8—C7121.1 (2)O5A—C23A—H23B109.5
C13—C8—C7119.4 (2)H23A—C23A—H23B109.5
O1—C9—C8119.5 (2)O5A—C23A—H23C109.5
O1—C9—C10120.7 (2)H23A—C23A—H23C109.5
C8—C9—C10119.8 (2)H23B—C23A—H23C109.5
O2—C10—C11125.5 (2)C23B—O5B—H5B109.5
O2—C10—C9113.8 (2)O5B—C23B—H23D109.5
C11—C10—C9120.7 (2)O5B—C23B—H23E109.5
C10—C11—C12119.4 (2)H23D—C23B—H23E109.5
C10—C11—H11A120.3O5B—C23B—H23F109.5
C12—C11—H11A120.3H23D—C23B—H23F109.5
C13—C12—C11120.3 (2)H23E—C23B—H23F109.5
C13—C12—H12A119.8O5B—C23B—H23H151.5
C11—C12—H12A119.8H23D—C23B—H23H89.8
C12—C13—C8120.2 (2)H23E—C23B—H23H82.0
C12—C13—H13A119.9O5C—C23C—C23Ci88 (2)
C8—C13—H13A119.9O5C—C23C—H23G109.3
N2—C14—C15113.7 (2)O5C—C23C—H23H106.9
N2—C14—H14A108.8C23Ci—C23C—H23H151.2
C15—C14—H14A108.8H23G—C23C—H23H109.5
N2—C14—H14B108.8O5C—C23C—H23I112.2
C15—C14—H14B108.8C23Ci—C23C—H23I85.8
H14A—C14—H14B107.7H23G—C23C—H23I109.5
C16—C15—C20119.2 (2)H23H—C23C—H23I109.5
C7—N1—C1—C2−179.5 (2)C21—O2—C10—C9172.4 (3)
C7—N1—C1—C60.7 (3)O1—C9—C10—O20.6 (3)
N1—C1—C2—C3−178.3 (2)C8—C9—C10—O2−180.0 (2)
C6—C1—C2—C31.6 (3)O1—C9—C10—C11179.5 (2)
C1—C2—C3—C4−0.9 (4)C8—C9—C10—C11−1.0 (4)
C2—C3—C4—C5−0.1 (4)O2—C10—C11—C12179.0 (3)
C3—C4—C5—C60.4 (4)C9—C10—C11—C120.2 (4)
C7—N2—C6—C5−178.4 (3)C10—C11—C12—C130.7 (4)
C14—N2—C6—C53.9 (4)C11—C12—C13—C8−0.8 (4)
C7—N2—C6—C11.5 (2)C9—C8—C13—C120.0 (4)
C14—N2—C6—C1−176.2 (2)C7—C8—C13—C12177.9 (2)
C4—C5—C6—N2−179.8 (2)C7—N2—C14—C15104.5 (3)
C4—C5—C6—C10.3 (4)C6—N2—C14—C15−78.2 (3)
C2—C1—C6—N2178.7 (2)N2—C14—C15—C16171.5 (2)
N1—C1—C6—N2−1.4 (3)N2—C14—C15—C20−11.3 (3)
C2—C1—C6—C5−1.4 (4)C20—C15—C16—O3−176.2 (2)
N1—C1—C6—C5178.5 (2)C14—C15—C16—O31.2 (3)
C1—N1—C7—N20.3 (3)C20—C15—C16—C170.4 (3)
C1—N1—C7—C8−175.3 (2)C14—C15—C16—C17177.8 (2)
C6—N2—C7—N1−1.2 (3)C22—O4—C17—C18−30.2 (4)
C14—N2—C7—N1176.5 (2)C22—O4—C17—C16149.2 (2)
C6—N2—C7—C8174.7 (2)O3—C16—C17—O4−3.0 (3)
C14—N2—C7—C8−7.6 (4)C15—C16—C17—O4−179.5 (2)
N1—C7—C8—C9−104.0 (3)O3—C16—C17—C18176.5 (2)
N2—C7—C8—C980.6 (3)C15—C16—C17—C180.0 (4)
N1—C7—C8—C1378.1 (3)O4—C17—C18—C19179.2 (2)
N2—C7—C8—C13−97.3 (3)C16—C17—C18—C19−0.3 (4)
C13—C8—C9—O1−179.6 (2)C17—C18—C19—C200.1 (4)
C7—C8—C9—O12.5 (4)C18—C19—C20—C150.4 (4)
C13—C8—C9—C100.9 (4)C16—C15—C20—C19−0.6 (3)
C7—C8—C9—C10−177.0 (2)C14—C15—C20—C19−177.8 (2)
C21—O2—C10—C11−6.5 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···O20.822.212.651 (2)114
O3—H3···O40.822.252.700 (3)114
O3—H3···O5Aii0.821.852.626 (5)157
O5A—H5A1···N1iii0.822.072.842 (5)157
O1—H1···O3iv0.822.192.956 (2)155
C14—H14B···O2iv0.972.463.335 (3)150
C23A—H23B···O5Av0.962.573.215 (16)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O5Ai0.821.852.626 (5)157
O5A—H5A1⋯N1ii0.822.072.842 (5)157
O1—H1⋯O3iii0.822.192.956 (2)155
C14—H14B⋯O2iii0.972.463.335 (3)150
C23A—H23B⋯O5Aiv0.962.573.215 (16)125

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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