Literature DB >> 21582625

Ethyl 6-methyl-sulfanyl-2-phenyl-1H-imidazo[1,2-b]pyrazole-7-carboxyl-ate monohydrate.

Teng-Fei Shao1, Gui-Long Zhao, Jian-Wu Wang.   

Abstract

The title compound, C(15)H(15)N(3)O(2)S·H(2)O, has been obtained in a search for new imidazo[1,2-b]pyrazole derivatives with better biological activity. The 1H-imidazo[1,2-b]pyrazole plane forms a dihedral angle of 16.90 (3)° with the benzene ring. π-π inter-actions are indicated by the short distance of 3.643 (2) Å between the centroids of the benzene and imidazole rings. The crystal structure also involves inter-molecular O-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582625      PMCID: PMC2968784          DOI: 10.1107/S1600536809010988

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of imidazo[1,2-b]pyrazole derivatives, see: Vanotti et al. (1994 ▶); Kinnamon et al. (2000 ▶); Li et al. (2005 ▶). For bond-length data, see: Allen et al., 1987 ▶.

Experimental

Crystal data

C15H15N3O2S·H2O M = 319.38 Orthorhombic, a = 19.017 (2) Å b = 5.4854 (7) Å c = 15.2314 (18) Å V = 1588.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 273 K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.957, T max = 0.978 8763 measured reflections 3326 independent reflections 1877 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.094 S = 0.97 3326 reflections 207 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 1442 Friedel pairs Flack parameter: −0.01 (9) Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809010988/hg2495sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010988/hg2495Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15N3O2S·H2OF(000) = 672
Mr = 319.38Dx = 1.335 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1077 reflections
a = 19.017 (2) Åθ = 2.5–18.0°
b = 5.4854 (7) ŵ = 0.22 mm1
c = 15.2314 (18) ÅT = 273 K
V = 1588.9 (3) Å3Block, colorless
Z = 40.20 × 0.10 × 0.10 mm
Bruker SMART CCD area-detector diffractometer3326 independent reflections
Radiation source: fine-focus sealed tube1877 reflections with I > 2σ(I)
graphiteRint = 0.051
φ and ω scansθmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −24→17
Tmin = 0.957, Tmax = 0.978k = −7→6
8763 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0345P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
3326 reflectionsΔρmax = 0.15 e Å3
207 parametersΔρmin = −0.14 e Å3
1 restraintAbsolute structure: Flack (1983), 1442 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.09788 (5)−0.14517 (15)0.84062 (6)0.0691 (3)
O10.15780 (12)0.2624 (4)0.58697 (15)0.0736 (7)
O20.09476 (11)−0.0245 (4)0.65679 (14)0.0650 (6)
O30.2436 (2)0.6611 (6)0.55376 (16)0.0945 (10)
H3A0.275 (3)0.647 (9)0.502 (4)0.16 (2)*
H3C0.223 (3)0.523 (10)0.551 (3)0.15 (2)*
N10.25532 (13)0.5824 (4)0.73178 (16)0.0526 (7)
H1A0.25680.63150.67820.063*
N20.22812 (12)0.3832 (5)0.84912 (16)0.0525 (6)
N30.19001 (14)0.2003 (5)0.88960 (15)0.0577 (7)
C10.34450 (18)1.0192 (6)0.7130 (2)0.0603 (9)
H1B0.31200.98690.66890.072*
C20.3920 (2)1.2072 (6)0.7024 (2)0.0719 (11)
H2A0.39091.30110.65160.086*
C30.4406 (2)1.2562 (7)0.7662 (3)0.0738 (10)
H3B0.47271.38240.75880.089*
C40.4416 (2)1.1188 (7)0.8405 (3)0.0839 (10)
H4A0.47481.15080.88380.101*
C50.39376 (19)0.9320 (6)0.8522 (3)0.0759 (10)
H5A0.39470.84130.90380.091*
C60.34440 (16)0.8779 (6)0.7882 (2)0.0512 (8)
C70.29409 (17)0.6804 (5)0.8010 (2)0.0527 (8)
C80.27674 (16)0.5545 (6)0.8748 (2)0.0544 (9)
H8A0.29420.57920.93120.065*
C90.21516 (17)0.3985 (6)0.76236 (19)0.0490 (8)
C100.15369 (15)0.1013 (5)0.8233 (2)0.0511 (8)
C110.16699 (17)0.2151 (5)0.7410 (2)0.0502 (8)
C120.14107 (16)0.1594 (6)0.6547 (2)0.0542 (8)
C130.0647 (2)−0.1008 (7)0.5744 (2)0.0850 (12)
H13A0.1009−0.16540.53600.102*
H13B0.04220.03580.54520.102*
C140.0120 (2)−0.2929 (7)0.5953 (3)0.0986 (13)
H14A−0.0095−0.34940.54210.148*
H14B−0.0235−0.22650.63330.148*
H14C0.0349−0.42670.62420.148*
C150.1101 (2)−0.1931 (7)0.9562 (3)0.0873 (13)
H15A0.0816−0.32760.97510.131*
H15B0.0966−0.04880.98760.131*
H15C0.1587−0.22850.96770.131*
U11U22U33U12U13U23
S10.0711 (6)0.0678 (5)0.0682 (6)−0.0051 (5)0.0093 (5)0.0161 (5)
O10.0939 (19)0.0829 (16)0.0440 (12)−0.0255 (15)−0.0010 (14)0.0096 (12)
O20.0703 (14)0.0722 (15)0.0526 (14)−0.0146 (14)−0.0035 (12)0.0025 (12)
O30.131 (3)0.107 (3)0.0453 (15)−0.041 (2)0.0042 (15)0.0143 (15)
N10.0628 (17)0.0571 (16)0.0377 (15)0.0017 (14)−0.0024 (13)0.0054 (14)
N20.0642 (17)0.0573 (16)0.0359 (15)0.0048 (13)−0.0019 (14)0.0087 (13)
N30.0700 (19)0.0583 (16)0.0448 (16)−0.0010 (15)0.0068 (15)0.0150 (14)
C10.057 (2)0.067 (2)0.056 (2)−0.0041 (19)−0.0011 (16)0.0014 (18)
C20.082 (3)0.074 (3)0.060 (2)−0.006 (2)0.013 (2)0.007 (2)
C30.070 (2)0.076 (2)0.076 (3)−0.015 (2)0.010 (2)−0.010 (2)
C40.089 (3)0.088 (3)0.075 (3)−0.019 (2)−0.015 (3)−0.003 (3)
C50.088 (3)0.077 (2)0.062 (2)−0.011 (2)−0.018 (2)0.006 (2)
C60.054 (2)0.0534 (18)0.046 (2)0.0094 (16)0.0014 (15)−0.0006 (15)
C70.060 (2)0.0549 (19)0.0435 (19)0.0042 (17)−0.0012 (17)0.0009 (17)
C80.062 (2)0.060 (2)0.0403 (18)0.0040 (18)−0.0048 (15)0.0020 (16)
C90.0551 (19)0.056 (2)0.0365 (18)0.0079 (17)0.0028 (15)0.0095 (16)
C100.0534 (19)0.0508 (18)0.049 (2)0.0074 (15)0.0022 (15)0.0050 (16)
C110.057 (2)0.054 (2)0.0405 (17)0.0023 (17)0.0057 (16)0.0049 (16)
C120.055 (2)0.055 (2)0.053 (2)0.0005 (17)0.0055 (17)0.0062 (18)
C130.087 (3)0.101 (3)0.066 (3)−0.026 (2)−0.005 (2)−0.011 (2)
C140.108 (3)0.094 (3)0.095 (3)−0.043 (3)0.001 (3)−0.013 (2)
C150.107 (3)0.089 (3)0.067 (3)−0.005 (2)0.026 (2)0.027 (2)
S1—C101.739 (3)C3—H3B0.9300
S1—C151.795 (4)C4—C51.382 (4)
O1—C121.219 (4)C4—H4A0.9300
O2—C121.339 (3)C5—C61.385 (4)
O2—C131.442 (4)C5—H5A0.9300
O3—H3A0.99 (6)C6—C71.459 (4)
O3—H3C0.85 (6)C7—C81.359 (4)
N1—C91.348 (3)C8—H8A0.9300
N1—C71.395 (4)C9—C111.399 (4)
N1—H1A0.8600C10—C111.423 (4)
N2—C91.347 (4)C11—C121.436 (4)
N2—C81.375 (4)C13—C141.489 (5)
N2—N31.383 (3)C13—H13A0.9700
N3—C101.339 (4)C13—H13B0.9700
C1—C21.380 (4)C14—H14A0.9600
C1—C61.383 (4)C14—H14B0.9600
C1—H1B0.9300C14—H14C0.9600
C2—C31.368 (5)C15—H15A0.9600
C2—H2A0.9300C15—H15B0.9600
C3—C41.360 (5)C15—H15C0.9600
Cg1···Cg2i3.643 (2)
C10—S1—C15100.60 (17)C7—C8—H8A127.0
C12—O2—C13117.3 (3)N2—C8—H8A127.0
H3A—O3—H3C99 (4)N2—C9—N1106.4 (3)
C9—N1—C7109.0 (3)N2—C9—C11107.7 (3)
C9—N1—H1A125.5N1—C9—C11146.0 (3)
C7—N1—H1A125.5N3—C10—C11113.3 (3)
C9—N2—C8111.1 (3)N3—C10—S1121.0 (2)
C9—N2—N3112.8 (3)C11—C10—S1125.7 (2)
C8—N2—N3136.2 (3)C9—C11—C10103.1 (3)
C10—N3—N2103.2 (2)C9—C11—C12126.2 (3)
C2—C1—C6121.1 (3)C10—C11—C12130.6 (3)
C2—C1—H1B119.4O1—C12—O2122.7 (3)
C6—C1—H1B119.4O1—C12—C11125.9 (3)
C3—C2—C1120.4 (3)O2—C12—C11111.4 (3)
C3—C2—H2A119.8O2—C13—C14106.6 (3)
C1—C2—H2A119.8O2—C13—H13A110.4
C4—C3—C2119.5 (4)C14—C13—H13A110.4
C4—C3—H3B120.3O2—C13—H13B110.4
C2—C3—H3B120.3C14—C13—H13B110.4
C3—C4—C5120.6 (4)H13A—C13—H13B108.6
C3—C4—H4A119.7C13—C14—H14A109.5
C5—C4—H4A119.7C13—C14—H14B109.5
C4—C5—C6120.9 (4)H14A—C14—H14B109.5
C4—C5—H5A119.5C13—C14—H14C109.5
C6—C5—H5A119.5H14A—C14—H14C109.5
C1—C6—C5117.5 (3)H14B—C14—H14C109.5
C1—C6—C7121.9 (3)S1—C15—H15A109.5
C5—C6—C7120.6 (3)S1—C15—H15B109.5
C8—C7—N1107.5 (3)H15A—C15—H15B109.5
C8—C7—C6130.3 (3)S1—C15—H15C109.5
N1—C7—C6122.1 (3)H15A—C15—H15C109.5
C7—C8—N2106.0 (3)H15B—C15—H15C109.5
C9—N2—N3—C100.9 (3)N3—N2—C9—C11−1.2 (3)
C8—N2—N3—C10−178.6 (3)C7—N1—C9—N20.5 (3)
C6—C1—C2—C30.6 (5)C7—N1—C9—C11−177.5 (4)
C1—C2—C3—C4−0.3 (5)N2—N3—C10—C11−0.2 (3)
C2—C3—C4—C5−0.5 (6)N2—N3—C10—S1178.80 (19)
C3—C4—C5—C61.0 (6)C15—S1—C10—N3−0.8 (3)
C2—C1—C6—C5−0.1 (5)C15—S1—C10—C11178.0 (3)
C2—C1—C6—C7179.2 (3)N2—C9—C11—C101.0 (3)
C4—C5—C6—C1−0.7 (5)N1—C9—C11—C10179.0 (4)
C4—C5—C6—C7179.9 (3)N2—C9—C11—C12−177.1 (3)
C9—N1—C7—C8−0.4 (3)N1—C9—C11—C120.9 (7)
C9—N1—C7—C6178.0 (2)N3—C10—C11—C9−0.5 (3)
C1—C6—C7—C8−165.9 (3)S1—C10—C11—C9−179.5 (2)
C5—C6—C7—C813.5 (5)N3—C10—C11—C12177.5 (3)
C1—C6—C7—N116.2 (4)S1—C10—C11—C12−1.4 (5)
C5—C6—C7—N1−164.4 (3)C13—O2—C12—O10.4 (4)
N1—C7—C8—N20.1 (3)C13—O2—C12—C11−179.7 (3)
C6—C7—C8—N2−178.1 (3)C9—C11—C12—O10.8 (5)
C9—N2—C8—C70.2 (3)C10—C11—C12—O1−176.9 (3)
N3—N2—C8—C7179.7 (3)C9—C11—C12—O2−179.1 (3)
C8—N2—C9—N1−0.5 (3)C10—C11—C12—O23.2 (4)
N3—N2—C9—N1179.9 (2)C12—O2—C13—C14−176.1 (3)
C8—N2—C9—C11178.4 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3A···N3ii0.99 (6)1.86 (6)2.809 (4)160 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯N3i0.99 (6)1.86 (6)2.809 (4)160 (5)

Symmetry code: (i) .

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