Literature DB >> 21582580

1-(2-Fluoro-phen-yl)-6,7-dimethoxy-isochroman.

Aamer Saeed, Jim Simpson, Roderick G Stanley.   

Abstract

In the title compound, C(17)H(17)FO(3), the benzene ring of the isochroman unit is inclined at 84.96 (7)° to the fluoro-benzene ring plane, and the pyran ring adopts a half-boat conformation. In the crystal structure, C-H⋯O hydrogen bonds link mol-ecules into rows along the c axis, while C-H⋯O inter-actions and C-H⋯F hydrogen bonds to the fluorine acceptor stack the mol-ecules down the b axis. In addition, the crystal structure exhibits a weak C-H⋯π inter-action between a methyl H atom of the meth-oxy group and the dimethoxy-benzene ring of an adjacent mol-ecule.

Entities:  

Year:  2009        PMID: 21582580      PMCID: PMC2969092          DOI: 10.1107/S160053680900926X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of naturally occurring isochromans, see: Imamura et al. (2000 ▶); Ogawa et al. (2004 ▶); Peng et al. (1999 ▶); Kunesch et al. (1987 ▶). For the biological activity of isochromans, see: Zhang et al. (2008 ▶); Lorenz et al. (2005 ▶); Togna et al. (2003 ▶); Bianchi et al. (2004 ▶); Cutler et al. (1997 ▶); Liu et al. (2005 ▶); TenBrink et al. (1996 ▶); Frater et al. (1999 ▶); Dobson & Humber (1975 ▶); Yamato et al. (1985 ▶); McCall et al. (1982 ▶). For the synthesis of isochromans, see: Guiso et al. (2001 ▶). For related structures, see: Saeed & Flörke (2006a ▶,b ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶); and for reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H17FO3 M = 288.31 Monoclinic, a = 15.730 (2) Å b = 5.2328 (8) Å c = 16.477 (2) Å β = 93.108 (8)° V = 1354.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 89 K 0.29 × 0.22 × 0.13 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.789, T max = 0.986 13466 measured reflections 2371 independent reflections 1864 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.261 S = 1.28 2371 reflections 193 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: APEX2 and SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and TITAN2000 (Hunter & Simpson, 1999 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680900926X/lx2092sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900926X/lx2092Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H17FO3F(000) = 608
Mr = 288.31Dx = 1.414 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3061 reflections
a = 15.730 (2) Åθ = 2.5–28.7°
b = 5.2328 (8) ŵ = 0.11 mm1
c = 16.477 (2) ÅT = 89 K
β = 93.108 (8)°Irregular fragment, colourless
V = 1354.3 (3) Å30.29 × 0.22 × 0.13 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2371 independent reflections
Radiation source: fine-focus sealed tube1864 reflections with I > 2σ(I)
graphiteRint = 0.072
Detector resolution: 10.0 pixels mm-1θmax = 25.0°, θmin = 2.6°
ω' scansh = −17→18
Absorption correction: multi-scan (SADABS; Bruker, 2006)k = −6→5
Tmin = 0.789, Tmax = 0.986l = −19→19
13466 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.074H-atom parameters constrained
wR(F2) = 0.261w = 1/[σ2(Fo2) + (0.1483P)2 + 0.6898P] where P = (Fo2 + 2Fc2)/3
S = 1.28(Δ/σ)max < 0.001
2371 reflectionsΔρmax = 0.45 e Å3
193 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXS97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.021 (8)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.23025 (15)0.7414 (5)0.31621 (15)0.0181 (7)
C10.3182 (2)0.7001 (7)0.3030 (2)0.0203 (9)
H1A0.34250.85510.27870.024*
H1B0.32400.55680.26440.024*
C20.3667 (2)0.6388 (7)0.3826 (2)0.0177 (9)
H2A0.35240.46350.39990.021*
H2B0.42870.64550.37490.021*
C30.3445 (2)0.8270 (7)0.4478 (2)0.0151 (8)
C40.3972 (2)0.8448 (6)0.5191 (2)0.0149 (8)
H40.44580.73730.52570.018*
C50.3797 (2)1.0161 (6)0.5799 (2)0.0140 (8)
O20.42783 (15)1.0436 (5)0.65158 (15)0.0173 (7)
C160.4888 (2)0.8446 (7)0.6690 (2)0.0199 (9)
H16A0.46080.67790.66260.030*
H16B0.51240.86270.72500.030*
H16C0.53480.85710.63140.030*
C60.3085 (2)1.1783 (6)0.5699 (2)0.0143 (8)
O30.29623 (15)1.3416 (5)0.63316 (15)0.0167 (7)
C170.2271 (2)1.5183 (7)0.6224 (2)0.0167 (8)
H17A0.23531.62450.57450.025*
H17B0.22511.62750.67060.025*
H17C0.17341.42380.61480.025*
C70.2562 (2)1.1589 (6)0.4993 (2)0.0143 (8)
H70.20781.26650.49220.017*
C80.2740 (2)0.9841 (6)0.4389 (2)0.0143 (8)
C90.2186 (2)0.9759 (7)0.3601 (2)0.0154 (8)
H90.23681.11960.32500.019*
C100.1238 (2)1.0018 (6)0.3687 (2)0.0146 (8)
C110.0776 (2)0.8291 (6)0.4129 (2)0.0145 (8)
F10.12090 (13)0.6419 (4)0.45485 (12)0.0202 (6)
C12−0.0089 (2)0.8363 (6)0.4168 (2)0.0164 (8)
H12−0.03780.71400.44790.020*
C13−0.0540 (2)1.0280 (7)0.3740 (2)0.0185 (9)
H13−0.11421.03580.37500.022*
C14−0.0104 (2)1.2076 (7)0.3300 (2)0.0193 (9)
H14−0.04091.33940.30140.023*
C150.0770 (2)1.1947 (7)0.3276 (2)0.0162 (8)
H150.10611.31900.29750.019*
U11U22U33U12U13U23
O10.0232 (14)0.0159 (14)0.0156 (14)−0.0003 (10)0.0048 (10)−0.0068 (11)
C10.0219 (19)0.021 (2)0.018 (2)0.0006 (15)0.0063 (14)−0.0041 (16)
C20.0219 (19)0.0131 (18)0.019 (2)−0.0007 (14)0.0067 (14)−0.0015 (15)
C30.0200 (18)0.0126 (18)0.0135 (19)−0.0019 (13)0.0069 (13)0.0019 (14)
C40.0190 (18)0.0121 (18)0.0139 (19)0.0019 (13)0.0034 (13)0.0016 (14)
C50.0183 (18)0.0131 (17)0.0106 (18)−0.0022 (13)0.0020 (13)0.0020 (14)
O20.0204 (13)0.0169 (13)0.0145 (14)0.0043 (10)−0.0012 (9)−0.0007 (11)
C160.0218 (19)0.0155 (19)0.022 (2)0.0026 (14)−0.0017 (14)0.0030 (16)
C60.0232 (19)0.0093 (17)0.0111 (18)−0.0017 (13)0.0061 (13)−0.0018 (13)
O30.0233 (14)0.0151 (14)0.0116 (13)0.0065 (10)−0.0012 (9)−0.0042 (10)
C170.0215 (18)0.0127 (18)0.0159 (19)0.0030 (14)0.0013 (13)−0.0051 (14)
C70.0188 (18)0.0094 (17)0.0148 (19)0.0014 (13)0.0023 (13)0.0026 (14)
C80.0222 (19)0.0108 (17)0.0104 (18)−0.0027 (13)0.0047 (13)0.0012 (14)
C90.0247 (19)0.0114 (17)0.0105 (18)−0.0005 (14)0.0040 (13)−0.0022 (14)
C100.0238 (19)0.0103 (17)0.0096 (18)−0.0011 (13)0.0004 (13)−0.0041 (14)
C110.026 (2)0.0077 (17)0.0091 (18)0.0035 (13)−0.0024 (13)−0.0006 (13)
F10.0249 (12)0.0154 (12)0.0202 (12)0.0025 (8)0.0001 (8)0.0071 (9)
C120.029 (2)0.0109 (18)0.0099 (19)−0.0009 (14)0.0029 (14)−0.0023 (14)
C130.0215 (19)0.0170 (19)0.0169 (19)0.0021 (14)0.0009 (14)−0.0038 (15)
C140.030 (2)0.0125 (18)0.0148 (19)0.0064 (14)−0.0032 (14)−0.0016 (15)
C150.031 (2)0.0090 (16)0.0085 (18)−0.0008 (14)0.0011 (13)0.0015 (13)
O1—C11.429 (4)O3—C171.432 (4)
O1—C91.441 (4)C17—H17A0.9800
C1—C21.516 (5)C17—H17B0.9800
C1—H1A0.9900C17—H17C0.9800
C1—H1B0.9900C7—C81.391 (5)
C2—C31.512 (5)C7—H70.9500
C2—H2A0.9900C8—C91.525 (5)
C2—H2B0.9900C9—C101.511 (5)
C3—C81.382 (5)C9—H91.0000
C3—C41.404 (5)C10—C111.391 (5)
C4—C51.384 (5)C10—C151.401 (5)
C4—H40.9500C11—F11.360 (4)
C5—O21.375 (4)C11—C121.367 (5)
C5—C61.408 (5)C12—C131.397 (5)
O2—C161.434 (4)C12—H120.9500
C16—H16A0.9800C13—C141.391 (6)
C16—H16B0.9800C13—H130.9500
C16—H16C0.9800C14—C151.379 (5)
C6—O31.370 (4)C14—H140.9500
C6—C71.391 (5)C15—H150.9500
C1—O1—C9110.9 (3)H17A—C17—H17B109.5
O1—C1—C2110.2 (3)O3—C17—H17C109.5
O1—C1—H1A109.6H17A—C17—H17C109.5
C2—C1—H1A109.6H17B—C17—H17C109.5
O1—C1—H1B109.6C6—C7—C8120.9 (3)
C2—C1—H1B109.6C6—C7—H7119.5
H1A—C1—H1B108.1C8—C7—H7119.5
C3—C2—C1110.6 (3)C3—C8—C7120.4 (3)
C3—C2—H2A109.5C3—C8—C9119.5 (3)
C1—C2—H2A109.5C7—C8—C9120.0 (3)
C3—C2—H2B109.5O1—C9—C10106.1 (3)
C1—C2—H2B109.5O1—C9—C8111.6 (3)
H2A—C2—H2B108.1C10—C9—C8116.0 (3)
C8—C3—C4118.9 (3)O1—C9—H9107.6
C8—C3—C2121.8 (3)C10—C9—H9107.6
C4—C3—C2119.3 (3)C8—C9—H9107.6
C5—C4—C3121.2 (3)C11—C10—C15116.5 (3)
C5—C4—H4119.4C11—C10—C9122.5 (3)
C3—C4—H4119.4C15—C10—C9120.9 (3)
O2—C5—C4124.6 (3)F1—C11—C12117.9 (3)
O2—C5—C6115.8 (3)F1—C11—C10118.2 (3)
C4—C5—C6119.6 (3)C12—C11—C10123.8 (3)
C5—O2—C16115.3 (3)C11—C12—C13118.4 (3)
O2—C16—H16A109.5C11—C12—H12120.8
O2—C16—H16B109.5C13—C12—H12120.8
H16A—C16—H16B109.5C14—C13—C12119.9 (3)
O2—C16—H16C109.5C14—C13—H13120.1
H16A—C16—H16C109.5C12—C13—H13120.1
H16B—C16—H16C109.5C15—C14—C13120.1 (3)
O3—C6—C7125.5 (3)C15—C14—H14119.9
O3—C6—C5115.5 (3)C13—C14—H14119.9
C7—C6—C5119.0 (3)C14—C15—C10121.3 (3)
C6—O3—C17116.5 (3)C14—C15—H15119.4
O3—C17—H17A109.5C10—C15—H15119.4
O3—C17—H17B109.5
C9—O1—C1—C269.6 (4)C6—C7—C8—C9−176.7 (3)
O1—C1—C2—C3−47.7 (4)C1—O1—C9—C10178.8 (3)
C1—C2—C3—C815.5 (5)C1—O1—C9—C8−54.0 (4)
C1—C2—C3—C4−164.0 (3)C3—C8—C9—O120.5 (4)
C8—C3—C4—C5−0.1 (5)C7—C8—C9—O1−163.2 (3)
C2—C3—C4—C5179.4 (3)C3—C8—C9—C10142.2 (3)
C3—C4—C5—O2179.5 (3)C7—C8—C9—C10−41.5 (4)
C3—C4—C5—C6−0.9 (5)O1—C9—C10—C1164.0 (4)
C4—C5—O2—C16−13.0 (5)C8—C9—C10—C11−60.5 (4)
C6—C5—O2—C16167.4 (3)O1—C9—C10—C15−111.9 (3)
O2—C5—C6—O3−0.4 (4)C8—C9—C10—C15123.6 (3)
C4—C5—C6—O3−179.9 (3)C15—C10—C11—F1−178.8 (3)
O2—C5—C6—C7−179.2 (3)C9—C10—C11—F15.1 (5)
C4—C5—C6—C71.2 (5)C15—C10—C11—C121.1 (5)
C7—C6—O3—C17−4.7 (5)C9—C10—C11—C12−174.9 (3)
C5—C6—O3—C17176.6 (3)F1—C11—C12—C13179.9 (3)
O3—C6—C7—C8−179.3 (3)C10—C11—C12—C130.0 (5)
C5—C6—C7—C8−0.6 (5)C11—C12—C13—C14−1.0 (5)
C4—C3—C8—C70.8 (5)C12—C13—C14—C150.8 (5)
C2—C3—C8—C7−178.7 (3)C13—C14—C15—C100.3 (5)
C4—C3—C8—C9177.1 (3)C11—C10—C15—C14−1.3 (5)
C2—C3—C8—C9−2.4 (5)C9—C10—C15—C14174.8 (3)
C6—C7—C8—C3−0.5 (5)
D—H···AD—HH···AD···AD—H···A
C1—H1B···O2i0.992.593.360 (5)134
C7—H7···F1ii0.952.453.360 (4)160
C17—H17B···O1iii0.982.493.430 (4)160
C17—H17A···Cgii0.982.703.557 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1B⋯O2i0.992.593.360 (5)134
C7—H7⋯F1ii0.952.453.360 (4)160
C17—H17B⋯O1iii0.982.493.430 (4)160
C17—H17ACgii0.982.703.557 (3)146

Symmetry codes: (i) ; (ii) ; (iii) . Cg2 is the centroid of the C3–C8 benzene ring.

  12 in total

1.  Pseudodeflectusin, a novel isochroman derivative from Aspergillus pseudodeflectus a parasite of the sea weed, Sargassum fusiform, as a selective human cancer cytotoxin.

Authors:  Akitsu Ogawa; Chikako Murakami; Shinji Kamisuki; Isoko Kuriyama; Hiromi Yoshida; Fumio Sugawara; Yoshiyuki Mizushina
Journal:  Bioorg Med Chem Lett       Date:  2004-07-05       Impact factor: 2.823

2.  Estrogen receptor ligands. Part 11: Synthesis and activity of isochromans and isothiochromans.

Authors:  Jian Liu; Elizabeth T Birzin; Wanda Chan; Yi Tien Yang; Lee-Yuh Pai; Carolyn Dasilva; Edward C Hayes; Ralph T Mosley; Frank Dininno; Susan P Rohrer; James M Schaeffer; Milton L Hammond
Journal:  Bioorg Med Chem Lett       Date:  2005-02-01       Impact factor: 2.823

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  (S)-(-)-4-[4-[2-(isochroman-1-yl)ethyl]-piperazin-1-yl] benzenesulfonamide, a selective dopamine D4 antagonist.

Authors:  R E TenBrink; C L Bergh; J N Duncan; D W Harris; R M Huff; R A Lahti; C F Lawson; B S Lutzke; I J Martin; S A Rees; S K Schlachter; J C Sih; M W Smith
Journal:  J Med Chem       Date:  1996-06-21       Impact factor: 7.446

5.  Synthesis and antitumor activity of tropolone derivatives. 2.

Authors:  M Yamato; K Hashigaki; S Ishikawa; N Kokubu; Y Inoue; T Tsuruo; T Tashiro
Journal:  J Med Chem       Date:  1985-08       Impact factor: 7.446

6.  An antibiotic from Penicillium sp. covering the cocoon of the leaf-rolling moth, Dactylioglypha tonica.

Authors:  N Imamura; T Ishikawa; T Ohtsuka; K Yamamoto; M Dekura; H Fukami; R Nishida
Journal:  Biosci Biotechnol Biochem       Date:  2000-10       Impact factor: 2.043

7.  Natural and newly synthesized hydroxy-1-aryl-isochromans: a class of potential antioxidants and radical scavengers.

Authors:  Peter Lorenz; Michael Zeh; Jens Martens-Lobenhoffer; Harry Schmidt; Gerald Wolf; Thomas F W Horn
Journal:  Free Radic Res       Date:  2005-05

8.  1-(alkylamino)isochromans: hypotensives with peripheral and central activities.

Authors:  J M McCall; R B McCall; R E TenBrink; B V Kamdar; S J Humphrey; V H Sethy; D W Harris; C Daenzer
Journal:  J Med Chem       Date:  1982-01       Impact factor: 7.446

9.  A novel isochroman derivative inhibited apoptosis in vascular endothelial cells through depressing the levels of integrin beta4, p53 and ROS.

Authors:  Lu Zhang; Xingshang Zhu; BaoXiang Zhao; Jing Zhao; Yun Zhang; ShangLi Zhang; JunYing Miao
Journal:  Vascul Pharmacol       Date:  2008-02-06       Impact factor: 5.773

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.