Literature DB >> 21582560

(4S,5S)-2-(2-Bromo-phen-yl)-1,3-dioxolane-4,5-dicarboxamide.

Hua-Quan Liu1, De-Cai Wang, Wei Xu, Zheng Yang, Tao Gai.   

Abstract

The asymmetric unit of the title compound, C(11)H(11)BrN(2)O(4), contains two crystallographically independent mol-ecules in which the bromo-phenyl rings are oriented at dihedral angles of 39.28 (3)°. The dioxolane rings adopt envelope conformations. Intra-molecular N-H⋯O hydrogen bonds result in the formation of four five-membered rings, having planar and envelope conformations. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link mol-ecules into chains along the b axis, forming R(2) (2)(8) ring motifs.

Entities:  

Year:  2009        PMID: 21582560      PMCID: PMC2969105          DOI: 10.1107/S1600536809010009

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of similar compounds in the synthesis of platinum based anti-tumour agents and in organic syntheses, see: Kim et al. (1994 ▶); Pandey et al. (1997 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H11BrN2O4 M = 315.12 Monoclinic, a = 9.4150 (19) Å b = 14.458 (3) Å c = 9.6170 (19) Å β = 111.14 (3)° V = 1221.0 (5) Å3 Z = 4 Mo Kα radiation μ = 3.38 mm−1 T = 294 K 0.20 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.552, T max = 0.729 4504 measured reflections 4256 independent reflections 2669 reflections with I > 2σ(I) R int = 0.061 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.181 S = 1.00 4256 reflections 325 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.82 e Å−3 Absolute structure: Flack (1983 ▶), 1758 Friedel pairs Flack parameter: 0.00 (2) Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809010009/hk2643sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010009/hk2643Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H11BrN2O4F(000) = 632
Mr = 315.12Dx = 1.714 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 9.4150 (19) Åθ = 10–13°
b = 14.458 (3) ŵ = 3.38 mm1
c = 9.6170 (19) ÅT = 294 K
β = 111.14 (3)°Block, colorless
V = 1221.0 (5) Å30.20 × 0.10 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2669 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.061
graphiteθmax = 26.0°, θmin = 2.3°
ω/2θ scansh = 0→11
Absorption correction: ψ scan (North et al., 1968)k = −10→17
Tmin = 0.552, Tmax = 0.729l = −11→11
4504 measured reflections3 standard reflections every 120 min
4256 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.063H-atom parameters constrained
wR(F2) = 0.181w = 1/[σ2(Fo2) + (0.1P)2 + 1.54P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4256 reflectionsΔρmax = 0.54 e Å3
325 parametersΔρmin = −0.82 e Å3
0 restraintsAbsolute structure: Flack (1983), 1758 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.02596 (15)0.99788 (7)0.97303 (14)0.0608 (5)
Br20.51991 (15)0.59675 (7)0.96846 (14)0.0584 (4)
O10.2071 (7)0.8476 (4)1.2310 (7)0.0342 (15)
O20.3547 (9)0.7557 (5)1.1503 (8)0.045 (2)
O30.5492 (8)0.9264 (5)1.5118 (7)0.0425 (17)
O40.5063 (11)0.6732 (6)1.5238 (9)0.072 (3)
O50.1786 (8)0.3598 (6)0.8478 (8)0.0402 (19)
O60.3262 (6)0.4292 (4)0.7424 (6)0.0289 (14)
O7−0.0743 (8)0.2608 (5)0.5162 (8)0.051 (2)
O8−0.0128 (9)0.5151 (6)0.4748 (10)0.077 (3)
N10.3494 (10)1.0032 (7)1.3501 (9)0.054 (2)
H1A0.38721.05691.37980.065*
H1B0.26180.99831.27980.065*
N20.3894 (12)0.6010 (7)1.3088 (9)0.065 (3)
H2A0.39360.54871.35270.078*
H2B0.34800.60461.21330.078*
N30.1299 (12)0.2007 (8)0.6938 (12)0.083 (4)
H3B0.11230.14610.65570.100*
H3C0.20750.21030.77370.100*
N40.2056 (10)0.5835 (6)0.5937 (10)0.058 (3)
H4B0.18040.63540.54750.070*
H4C0.29460.57680.66090.070*
C1−0.1253 (13)0.8539 (9)0.7843 (12)0.054 (3)
H1C−0.19730.89940.74060.065*
C2−0.1452 (15)0.7645 (9)0.7283 (14)0.063 (3)
H2C−0.23350.74900.64910.076*
C3−0.0347 (14)0.6989 (9)0.7897 (12)0.060 (3)
H3A−0.04770.63970.74920.072*
C40.0952 (12)0.7193 (8)0.9104 (12)0.045 (3)
H4A0.16850.67380.95010.055*
C50.1177 (10)0.8071 (7)0.9733 (10)0.032 (2)
C60.0023 (11)0.8736 (7)0.9049 (11)0.041 (2)
C70.2506 (12)0.8300 (7)1.1051 (11)0.042 (3)
H7A0.30170.88461.08460.051*
C80.4385 (13)0.7664 (7)1.3091 (12)0.043 (3)
H8A0.54060.79131.32840.051*
C90.3383 (11)0.8363 (7)1.3586 (10)0.033 (2)
H9A0.31100.80911.43890.040*
C100.4257 (11)0.9281 (7)1.4125 (10)0.035 (2)
C110.4458 (12)0.6747 (7)1.3868 (11)0.040 (2)
C120.6632 (12)0.4664 (8)1.1863 (12)0.047 (3)
H12A0.73770.51191.21950.057*
C130.6768 (12)0.3799 (8)1.2638 (11)0.047 (3)
H13A0.76290.36791.34750.056*
C140.5657 (12)0.3166 (9)1.2157 (12)0.050 (3)
H14A0.57210.26191.26870.060*
C150.4429 (12)0.3328 (7)1.0882 (11)0.042 (2)
H15A0.36870.28721.05420.051*
C160.4242 (11)0.4149 (7)1.0072 (10)0.038 (2)
C170.5378 (11)0.4786 (7)1.0634 (10)0.038 (2)
C180.2854 (10)0.4319 (7)0.8716 (10)0.035 (2)
H18A0.23920.49150.87890.042*
C190.0858 (10)0.3643 (7)0.6949 (11)0.033 (2)
H19A−0.00530.40070.68420.040*
C200.1849 (12)0.4189 (7)0.6234 (10)0.041 (3)
H20A0.19840.38240.54330.049*
C210.0373 (12)0.2699 (7)0.6293 (12)0.041 (3)
C220.1035 (12)0.5114 (7)0.5599 (10)0.039 (2)
U11U22U33U12U13U23
Br10.0828 (10)0.0392 (9)0.0483 (8)0.0150 (7)0.0090 (7)0.0055 (7)
Br20.0742 (9)0.0320 (8)0.0488 (8)−0.0102 (7)−0.0022 (7)0.0053 (7)
O10.041 (3)0.031 (4)0.028 (4)0.001 (3)0.009 (3)−0.002 (3)
O20.070 (5)0.033 (5)0.028 (4)0.010 (4)0.011 (4)−0.001 (3)
O30.061 (4)0.026 (4)0.031 (4)−0.005 (3)0.006 (3)0.001 (3)
O40.113 (7)0.032 (5)0.035 (4)0.013 (4)−0.016 (4)−0.006 (4)
O50.048 (4)0.043 (5)0.023 (4)−0.007 (4)0.005 (3)0.000 (3)
O60.034 (3)0.031 (4)0.014 (3)0.007 (3)−0.001 (2)0.000 (3)
O70.060 (4)0.034 (5)0.032 (4)−0.001 (3)−0.016 (3)−0.005 (3)
O80.073 (5)0.043 (6)0.068 (6)−0.003 (4)−0.031 (5)0.019 (4)
N10.063 (5)0.030 (5)0.045 (5)−0.002 (5)−0.010 (4)−0.011 (5)
N20.121 (8)0.030 (5)0.024 (5)−0.022 (6)0.001 (5)0.002 (5)
N30.091 (7)0.033 (6)0.071 (7)0.008 (6)−0.038 (6)−0.003 (6)
N40.054 (5)0.042 (7)0.056 (6)−0.003 (5)−0.007 (4)0.023 (5)
C10.060 (5)0.062 (6)0.035 (5)0.007 (5)0.012 (4)0.007 (5)
C20.071 (6)0.059 (6)0.046 (6)−0.016 (5)0.006 (5)0.006 (5)
C30.086 (6)0.048 (6)0.040 (5)−0.012 (5)0.015 (4)−0.010 (5)
C40.062 (5)0.032 (5)0.037 (5)−0.003 (4)0.012 (4)0.001 (4)
C50.034 (4)0.033 (5)0.029 (4)−0.007 (4)0.012 (3)0.006 (4)
C60.054 (5)0.038 (5)0.030 (5)0.006 (4)0.015 (4)0.008 (4)
C70.067 (7)0.018 (6)0.038 (6)0.004 (5)0.016 (5)0.001 (5)
C80.064 (7)0.015 (6)0.033 (6)0.001 (5)−0.002 (5)−0.003 (5)
C90.052 (6)0.027 (6)0.022 (5)0.004 (4)0.015 (4)0.007 (4)
C100.052 (6)0.033 (7)0.019 (5)0.004 (5)0.010 (4)0.002 (4)
C110.058 (6)0.024 (6)0.025 (5)0.007 (5)0.000 (4)−0.005 (4)
C120.053 (5)0.044 (6)0.040 (5)0.002 (4)0.009 (4)−0.003 (4)
C130.052 (5)0.049 (6)0.030 (5)0.008 (4)0.004 (4)0.001 (4)
C140.058 (5)0.050 (6)0.034 (5)0.004 (4)0.008 (4)0.007 (4)
C150.062 (5)0.025 (5)0.031 (5)0.001 (4)0.007 (4)−0.003 (4)
C160.058 (5)0.027 (5)0.023 (4)0.004 (4)0.009 (4)−0.003 (4)
C170.055 (5)0.021 (5)0.031 (5)0.003 (4)0.006 (4)−0.004 (4)
C180.049 (5)0.031 (6)0.022 (5)−0.006 (5)0.009 (4)−0.003 (4)
C190.033 (5)0.025 (6)0.036 (6)−0.005 (4)0.008 (4)−0.007 (5)
C200.071 (7)0.021 (6)0.024 (5)0.020 (5)0.009 (5)0.000 (4)
C210.048 (6)0.028 (6)0.038 (6)−0.001 (5)0.003 (5)0.007 (5)
C220.059 (6)0.030 (7)0.019 (5)0.003 (5)0.002 (4)0.005 (4)
Br1—C61.897 (11)C2—H2C0.9300
Br2—C171.915 (10)C3—C41.381 (15)
O1—C91.402 (11)C3—H3A0.9300
O1—C71.434 (11)C4—C51.389 (15)
O2—C71.414 (12)C4—H4A0.9300
O2—C81.453 (12)C5—C61.422 (13)
O3—C101.210 (11)C5—C71.462 (14)
O4—C111.232 (12)C7—H7A0.9800
O5—C181.409 (11)C8—C111.511 (14)
O5—C191.416 (11)C8—C91.568 (14)
O6—C201.416 (11)C8—H8A0.9800
O6—C181.427 (11)C9—C101.549 (14)
O7—C211.217 (11)C9—H9A0.9800
O8—C221.107 (11)C12—C171.348 (13)
N1—C101.321 (12)C12—C131.437 (16)
N1—H1A0.8600C12—H12A0.9300
N1—H1B0.8600C13—C141.341 (15)
N2—C111.301 (13)C13—H13A0.9300
N2—H2A0.8600C14—C151.369 (14)
N2—H2B0.8600C14—H14A0.9300
N3—C211.324 (13)C15—C161.395 (14)
N3—H3B0.8600C15—H15A0.9300
N3—H3C0.8600C16—C171.367 (14)
N4—C221.375 (13)C16—C181.497 (12)
N4—H4B0.8600C18—H18A0.9800
N4—H4C0.8600C19—C211.504 (14)
C1—C61.366 (14)C19—C201.559 (15)
C1—C21.386 (18)C19—H19A0.9800
C1—H1C0.9300C20—C221.552 (13)
C2—C31.374 (17)C20—H20A0.9800
C9—O1—C7106.8 (7)C10—C9—H9A109.8
C7—O2—C8107.2 (8)C8—C9—H9A109.8
C18—O5—C19105.7 (7)O3—C10—N1125.8 (9)
C20—O6—C18103.7 (7)O3—C10—C9119.4 (8)
C10—N1—H1A120.0N1—C10—C9114.6 (8)
C10—N1—H1B120.0O4—C11—N2122.5 (10)
H1A—N1—H1B120.0O4—C11—C8117.7 (9)
C11—N2—H2A120.0N2—C11—C8119.8 (9)
C11—N2—H2B120.0C17—C12—C13117.1 (10)
H2A—N2—H2B120.0C17—C12—H12A121.5
C21—N3—H3B120.0C13—C12—H12A121.5
C21—N3—H3C120.0C14—C13—C12120.2 (10)
H3B—N3—H3C120.0C14—C13—H13A119.9
C22—N4—H4B120.0C12—C13—H13A119.9
C22—N4—H4C120.0C13—C14—C15119.6 (11)
H4B—N4—H4C120.0C13—C14—H14A120.2
C6—C1—C2118.7 (12)C15—C14—H14A120.2
C6—C1—H1C120.7C14—C15—C16122.8 (11)
C2—C1—H1C120.7C14—C15—H15A118.6
C3—C2—C1120.1 (12)C16—C15—H15A118.6
C3—C2—H2C120.0C17—C16—C15115.4 (9)
C1—C2—H2C120.0C17—C16—C18123.1 (9)
C2—C3—C4121.2 (12)C15—C16—C18121.4 (9)
C2—C3—H3A119.4C12—C17—C16124.8 (10)
C4—C3—H3A119.4C12—C17—Br2115.7 (8)
C3—C4—C5120.7 (11)C16—C17—Br2119.4 (7)
C3—C4—H4A119.6O5—C18—O6103.9 (7)
C5—C4—H4A119.6O5—C18—C16111.5 (8)
C4—C5—C6116.5 (9)O6—C18—C16109.3 (8)
C4—C5—C7122.2 (9)O5—C18—H18A110.7
C6—C5—C7121.3 (9)O6—C18—H18A110.7
C1—C6—C5122.8 (11)C16—C18—H18A110.7
C1—C6—Br1116.7 (8)O5—C19—C21112.0 (9)
C5—C6—Br1120.4 (8)O5—C19—C20103.8 (7)
O2—C7—O1104.7 (8)C21—C19—C20114.5 (9)
O2—C7—C5112.1 (8)O5—C19—H19A108.8
O1—C7—C5110.9 (8)C21—C19—H19A108.8
O2—C7—H7A109.7C20—C19—H19A108.8
O1—C7—H7A109.7O6—C20—C22114.5 (8)
C5—C7—H7A109.7O6—C20—C19103.5 (7)
O2—C8—C11109.7 (8)C22—C20—C19108.8 (8)
O2—C8—C9103.3 (8)O6—C20—H20A110.0
C11—C8—C9109.9 (9)C22—C20—H20A110.0
O2—C8—H8A111.2C19—C20—H20A110.0
C11—C8—H8A111.2O7—C21—N3123.2 (10)
C9—C8—H8A111.2O7—C21—C19120.4 (9)
O1—C9—C10112.7 (8)N3—C21—C19116.1 (9)
O1—C9—C8104.3 (7)O8—C22—N4124.0 (10)
C10—C9—C8110.4 (8)O8—C22—C20123.2 (10)
O1—C9—H9A109.8N4—C22—C20110.9 (8)
C6—C1—C2—C3−2.9 (18)C17—C12—C13—C14−1.8 (16)
C1—C2—C3—C42.1 (19)C12—C13—C14—C153.3 (17)
C2—C3—C4—C50.0 (19)C13—C14—C15—C16−2.5 (18)
C3—C4—C5—C6−1.2 (15)C14—C15—C16—C170.3 (16)
C3—C4—C5—C7177.3 (10)C14—C15—C16—C18−177.5 (10)
C2—C1—C6—C51.7 (16)C13—C12—C17—C16−0.5 (17)
C2—C1—C6—Br1178.3 (9)C13—C12—C17—Br2177.4 (8)
C4—C5—C6—C10.4 (15)C15—C16—C17—C121.2 (16)
C7—C5—C6—C1−178.2 (10)C18—C16—C17—C12179.0 (10)
C4—C5—C6—Br1−176.1 (8)C15—C16—C17—Br2−176.6 (7)
C7—C5—C6—Br15.3 (13)C18—C16—C17—Br21.2 (14)
C8—O2—C7—O1−33.6 (10)C19—O5—C18—O6−40.6 (9)
C8—O2—C7—C5−153.9 (9)C19—O5—C18—C16−158.2 (8)
C9—O1—C7—O238.4 (9)C20—O6—C18—O544.5 (8)
C9—O1—C7—C5159.5 (8)C20—O6—C18—C16163.6 (8)
C4—C5—C7—O24.6 (14)C17—C16—C18—O5−173.1 (9)
C6—C5—C7—O2−176.9 (8)C15—C16—C18—O54.5 (14)
C4—C5—C7—O1−111.9 (10)C17—C16—C18—O672.7 (12)
C6—C5—C7—O166.6 (11)C15—C16—C18—O6−109.7 (10)
C7—O2—C8—C11133.8 (9)C18—O5—C19—C21144.8 (9)
C7—O2—C8—C916.6 (10)C18—O5—C19—C2020.7 (10)
C7—O1—C9—C1092.9 (9)C18—O6—C20—C2288.1 (9)
C7—O1—C9—C8−26.9 (9)C18—O6—C20—C19−30.1 (9)
O2—C8—C9—O16.4 (10)O5—C19—C20—O66.1 (9)
C11—C8—C9—O1−110.6 (8)C21—C19—C20—O6−116.3 (8)
O2—C8—C9—C10−114.9 (9)O5—C19—C20—C22−116.0 (8)
C11—C8—C9—C10128.1 (9)C21—C19—C20—C22121.6 (9)
O1—C9—C10—O3−172.2 (8)O5—C19—C21—O7158.6 (10)
C8—C9—C10—O3−56.0 (11)C20—C19—C21—O7−83.5 (13)
O1—C9—C10—N112.7 (12)O5—C19—C21—N3−27.2 (14)
C8—C9—C10—N1128.9 (9)C20—C19—C21—N390.7 (13)
O2—C8—C11—O4−176.2 (9)O6—C20—C22—O8−173.5 (11)
C9—C8—C11—O4−63.3 (13)C19—C20—C22—O8−58.3 (14)
O2—C8—C11—N23.9 (15)O6—C20—C22—N421.5 (12)
C9—C8—C11—N2116.9 (11)C19—C20—C22—N4136.7 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O10.862.252.657 (12)109
N2—H2B···O20.862.272.660 (12)107
N3—H3B···O8i0.862.283.123 (14)167
N3—H3C···O50.862.322.684 (14)106
N4—H4B···O7ii0.862.052.876 (11)160
N4—H4C···O60.862.262.672 (11)110
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O10.862.252.657 (12)109
N2—H2B⋯O20.862.272.660 (12)107
N3—H3B⋯O8i0.862.283.123 (14)167
N3—H3C⋯O50.862.322.684 (14)106
N4—H4B⋯O7ii0.862.052.876 (11)160
N4—H4C⋯O60.862.262.672 (11)110

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  J Med Chem       Date:  1994-05-13       Impact factor: 7.446

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Authors:  Anthony L Spek
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