Literature DB >> 21582545

tert-Butyl 3-[2,2-bis-(ethoxy-carbon-yl)-vinyl]-2-methyl-1H-indole-1-carboxyl-ate.

M Thenmozhi, T Kavitha, V Dhayalan, A K Mohanakrishnan, M N Ponnuswamy.   

Abstract

In the title compound, C(22)H(27)NO(6), the indole ring system is planar and the ethoxy-carbonyl chains adopt extended conformations. In the crystal, inversion dimers linked by pairs of C-H⋯O hydrogen bonds occur, resulting in R(2) (2)(16) dimers, which are inter-linked into a chain propagating along the a axis by π-π stacking inter-actions [centroid-centroid distance 3.5916 (9) Å].

Entities:  

Year:  2009        PMID: 21582545      PMCID: PMC2968933          DOI: 10.1107/S1600536809009635

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Hood et al. (1992 ▶); Cram et al. (2001 ▶). For hybridization, see: Beddoes et al. (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C22H27NO6 M = 401.45 Monoclinic, a = 9.1933 (3) Å b = 21.8495 (6) Å c = 10.7676 (3) Å β = 96.510 (2)° V = 2148.93 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.978, T max = 0.982 24241 measured reflections 4766 independent reflections 3534 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.134 S = 1.04 4766 reflections 286 parameters 28 restraints H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809009635/ci2766sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009635/ci2766Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H27NO6F(000) = 856
Mr = 401.45Dx = 1.241 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4766 reflections
a = 9.1933 (3) Åθ = 2.1–27.2°
b = 21.8495 (6) ŵ = 0.09 mm1
c = 10.7676 (3) ÅT = 293 K
β = 96.510 (2)°Block, brown
V = 2148.93 (11) Å30.25 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII area-detector diffractometer4766 independent reflections
Radiation source: fine-focus sealed tube3534 reflections with I > 2σ(I)
graphiteRint = 0.030
ω and φ scansθmax = 27.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −11→11
Tmin = 0.978, Tmax = 0.982k = −27→28
24241 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0561P)2 + 0.6467P] where P = (Fo2 + 2Fc2)/3
4766 reflections(Δ/σ)max = 0.001
286 parametersΔρmax = 0.25 e Å3
28 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.11345 (14)0.63504 (5)0.68637 (11)0.0507 (3)
O20.00198 (17)0.68868 (6)0.52523 (12)0.0639 (4)
O30.39872 (13)0.51263 (5)0.24128 (12)0.0508 (3)
O40.34111 (19)0.43222 (8)0.11765 (15)0.0797 (5)
O50.3720 (2)0.33528 (7)0.4564 (2)0.0942 (6)
O60.49107 (19)0.34337 (7)0.2910 (2)0.0947 (6)
N10.09171 (14)0.59345 (5)0.49600 (12)0.0370 (3)
C20.03282 (17)0.58731 (7)0.37025 (14)0.0378 (3)
C3−0.06844 (19)0.62313 (8)0.29745 (16)0.0482 (4)
H3−0.10610.65870.32870.058*
C4−0.1107 (2)0.60389 (9)0.17750 (17)0.0572 (5)
H4−0.17750.62730.12630.069*
C5−0.0566 (2)0.55057 (10)0.13070 (16)0.0571 (5)
H5−0.08770.53870.04900.069*
C60.0423 (2)0.51497 (9)0.20315 (16)0.0491 (4)
H60.07760.47900.17150.059*
C70.08915 (17)0.53353 (7)0.32463 (14)0.0386 (3)
C80.18327 (17)0.50633 (7)0.42574 (15)0.0381 (3)
C90.18175 (16)0.54260 (7)0.52819 (14)0.0368 (3)
C100.06355 (18)0.64434 (7)0.56895 (15)0.0425 (4)
C110.1044 (2)0.68359 (8)0.78201 (17)0.0514 (4)
C120.1872 (3)0.65426 (12)0.89548 (19)0.0792 (7)
H12A0.13990.61670.91400.119*
H12B0.18850.68150.96550.119*
H12C0.28570.64590.87920.119*
C130.1810 (2)0.74056 (9)0.7464 (2)0.0657 (5)
H13A0.27680.73020.72560.099*
H13B0.18970.76870.81530.099*
H13C0.12560.75920.67540.099*
C14−0.0535 (2)0.69411 (10)0.7993 (2)0.0672 (6)
H14A−0.10320.71200.72480.101*
H14B−0.05950.72130.86860.101*
H14C−0.09860.65580.81570.101*
C150.26345 (17)0.44895 (7)0.42693 (16)0.0431 (4)
H150.26550.42630.50020.052*
C160.33461 (18)0.42406 (7)0.33802 (17)0.0465 (4)
C170.35749 (19)0.45525 (8)0.21940 (18)0.0513 (4)
C180.4202 (3)0.55038 (11)0.1348 (2)0.0752 (6)
H18A0.33630.54740.07180.090*
H18B0.50670.53730.09810.090*
C190.4382 (4)0.61385 (13)0.1811 (3)0.1133 (11)
H19A0.34980.62700.21280.170*
H19B0.45850.64020.11390.170*
H19C0.51790.61560.24680.170*
C200.4073 (2)0.36390 (8)0.3563 (2)0.0626 (5)
C21A0.4535 (8)0.2800 (2)0.5168 (11)0.093 (2)0.580 (10)
H21A0.54730.27410.48530.111*0.580 (10)
H21B0.46840.28360.60710.111*0.580 (10)
C22A0.3500 (8)0.2300 (3)0.4765 (13)0.089 (3)0.420 (10)
H22A0.38970.19170.50810.134*0.420 (10)
H22B0.33500.22860.38690.134*0.420 (10)
H22C0.25820.23740.50840.134*0.420 (10)
C21B0.4319 (10)0.2723 (3)0.4519 (9)0.0645 (19)0.420 (10)
H21C0.39360.25110.37600.077*0.420 (10)
H21D0.53800.27240.45910.077*0.420 (10)
C22B0.3768 (8)0.2453 (3)0.5638 (9)0.096 (2)0.580 (10)
H22D0.40680.20330.57190.144*0.580 (10)
H22E0.27180.24750.55520.144*0.580 (10)
H22F0.41600.26750.63690.144*0.580 (10)
C230.26713 (19)0.53322 (8)0.65178 (16)0.0478 (4)
H23A0.32830.49780.64870.072*
H23B0.20140.52730.71390.072*
H23C0.32710.56850.67290.072*
U11U22U33U12U13U23
O10.0686 (8)0.0437 (6)0.0384 (6)0.0115 (6)−0.0001 (6)−0.0066 (5)
O20.0922 (10)0.0455 (7)0.0517 (8)0.0258 (7)−0.0018 (7)−0.0023 (6)
O30.0479 (7)0.0487 (7)0.0557 (8)0.0009 (5)0.0059 (6)0.0031 (5)
O40.0929 (12)0.0852 (11)0.0638 (9)−0.0061 (9)0.0205 (8)−0.0259 (8)
O50.0943 (12)0.0479 (8)0.1461 (17)0.0286 (8)0.0386 (12)0.0268 (10)
O60.0797 (11)0.0628 (10)0.1485 (17)0.0245 (8)0.0437 (11)−0.0134 (10)
N10.0403 (7)0.0349 (6)0.0353 (7)0.0041 (5)0.0019 (5)−0.0001 (5)
C20.0400 (8)0.0386 (8)0.0349 (8)0.0015 (6)0.0047 (6)0.0018 (6)
C30.0525 (10)0.0458 (9)0.0454 (10)0.0110 (7)0.0022 (8)0.0056 (7)
C40.0592 (11)0.0679 (12)0.0421 (10)0.0134 (9)−0.0045 (8)0.0110 (8)
C50.0597 (11)0.0756 (13)0.0348 (9)0.0058 (10)−0.0003 (8)−0.0023 (8)
C60.0504 (10)0.0566 (10)0.0406 (9)0.0053 (8)0.0058 (7)−0.0074 (7)
C70.0378 (8)0.0409 (8)0.0375 (8)0.0012 (6)0.0058 (6)0.0008 (6)
C80.0361 (8)0.0367 (8)0.0416 (9)0.0019 (6)0.0050 (6)0.0006 (6)
C90.0337 (7)0.0344 (7)0.0419 (8)0.0017 (6)0.0027 (6)0.0028 (6)
C100.0488 (9)0.0369 (8)0.0417 (9)0.0052 (7)0.0043 (7)−0.0016 (7)
C110.0596 (11)0.0500 (10)0.0446 (10)0.0031 (8)0.0055 (8)−0.0149 (7)
C120.1044 (18)0.0845 (16)0.0454 (11)0.0108 (14)−0.0056 (11)−0.0163 (11)
C130.0655 (13)0.0569 (11)0.0758 (14)−0.0066 (9)0.0130 (11)−0.0185 (10)
C140.0648 (13)0.0679 (13)0.0716 (14)−0.0075 (10)0.0198 (11)−0.0251 (10)
C150.0403 (8)0.0369 (8)0.0517 (10)0.0015 (6)0.0037 (7)0.0014 (7)
C160.0400 (9)0.0372 (8)0.0625 (11)0.0010 (7)0.0070 (8)−0.0074 (7)
C170.0416 (9)0.0527 (10)0.0606 (11)0.0030 (8)0.0098 (8)−0.0116 (9)
C180.0777 (15)0.0826 (16)0.0658 (14)−0.0049 (12)0.0107 (11)0.0210 (12)
C190.147 (3)0.0703 (17)0.117 (2)−0.0217 (17)−0.009 (2)0.0326 (16)
C200.0486 (10)0.0378 (9)0.1030 (17)0.0015 (8)0.0151 (11)−0.0059 (10)
C21A0.107 (4)0.057 (3)0.112 (5)0.024 (3)0.001 (4)0.002 (4)
C22A0.094 (4)0.072 (4)0.101 (6)0.004 (3)0.008 (4)0.009 (4)
C21B0.090 (4)0.038 (3)0.067 (4)0.022 (3)0.014 (3)0.011 (3)
C22B0.117 (4)0.073 (3)0.102 (5)0.028 (3)0.031 (4)0.037 (3)
C230.0466 (9)0.0463 (9)0.0477 (10)0.0074 (7)−0.0065 (7)0.0002 (7)
O1—C101.311 (2)C12—H12C0.96
O1—C111.4874 (19)C13—H13A0.96
O2—C101.1917 (19)C13—H13B0.96
O3—C171.323 (2)C13—H13C0.96
O3—C181.444 (2)C14—H14A0.96
O4—C171.200 (2)C14—H14B0.96
O5—C201.318 (3)C14—H14C0.96
O5—C21B1.484 (6)C15—C161.335 (2)
O5—C21A1.528 (6)C15—H150.93
O6—C201.188 (2)C16—C201.478 (2)
N1—C101.402 (2)C16—C171.484 (3)
N1—C91.4053 (19)C18—C191.477 (4)
N1—C21.4065 (19)C18—H18A0.97
C2—C31.389 (2)C18—H18B0.97
C2—C71.396 (2)C19—H19A0.96
C3—C41.372 (3)C19—H19B0.96
C3—H30.93C19—H19C0.96
C4—C51.384 (3)C21A—C22A1.481 (7)
C4—H40.93C21A—H21A0.97
C5—C61.371 (3)C21A—H21B0.97
C5—H50.93C22A—H22A0.96
C6—C71.390 (2)C22A—H22B0.96
C6—H60.93C22A—H22C0.96
C7—C81.440 (2)C21B—C22B1.482 (6)
C8—C91.360 (2)C21B—H21C0.97
C8—C151.454 (2)C21B—H21D0.97
C9—C231.481 (2)C22B—H22D0.96
C11—C131.501 (3)C22B—H22E0.96
C11—C141.502 (3)C22B—H22F0.96
C11—C121.507 (3)C23—H23A0.96
C12—H12A0.96C23—H23B0.96
C12—H12B0.96C23—H23C0.96
C10—O1—C11121.09 (13)H14A—C14—H14C109.5
C17—O3—C18117.53 (16)H14B—C14—H14C109.5
C20—O5—C21B106.6 (3)C16—C15—C8129.37 (16)
C20—O5—C21A124.6 (4)C16—C15—H15115.3
C10—N1—C9129.03 (13)C8—C15—H15115.3
C10—N1—C2122.65 (12)C15—C16—C20121.19 (18)
C9—N1—C2108.28 (12)C15—C16—C17123.98 (15)
C3—C2—C7121.85 (15)C20—C16—C17114.67 (16)
C3—C2—N1130.54 (15)O4—C17—O3124.32 (19)
C7—C2—N1107.54 (13)O4—C17—C16125.33 (18)
C4—C3—C2117.33 (16)O3—C17—C16110.35 (15)
C4—C3—H3121.3O3—C18—C19106.8 (2)
C2—C3—H3121.3O3—C18—H18A110.4
C3—C4—C5121.69 (17)C19—C18—H18A110.4
C3—C4—H4119.2O3—C18—H18B110.4
C5—C4—H4119.2C19—C18—H18B110.4
C6—C5—C4120.87 (17)H18A—C18—H18B108.6
C6—C5—H5119.6C18—C19—H19A109.5
C4—C5—H5119.6C18—C19—H19B109.5
C5—C6—C7118.98 (17)H19A—C19—H19B109.5
C5—C6—H6120.5C18—C19—H19C109.5
C7—C6—H6120.5H19A—C19—H19C109.5
C6—C7—C2119.28 (15)H19B—C19—H19C109.5
C6—C7—C8133.34 (15)O6—C20—O5122.79 (19)
C2—C7—C8107.25 (13)O6—C20—C16124.8 (2)
C9—C8—C7108.20 (13)O5—C20—C16112.41 (17)
C9—C8—C15123.19 (14)C22A—C21A—O5101.0 (5)
C7—C8—C15128.55 (15)C22A—C21A—H21A111.6
C8—C9—N1108.70 (13)O5—C21A—H21A111.6
C8—C9—C23126.54 (14)C22A—C21A—H21B111.6
N1—C9—C23124.65 (14)O5—C21A—H21B111.6
O2—C10—O1127.26 (15)H21A—C21A—H21B109.4
O2—C10—N1122.20 (15)C21A—C22A—H22A109.5
O1—C10—N1110.53 (13)C21A—C22A—H22B109.5
O1—C11—C13110.46 (15)H22A—C22A—H22B109.5
O1—C11—C14109.02 (15)C21A—C22A—H22C109.5
C13—C11—C14113.14 (17)H22A—C22A—H22C109.5
O1—C11—C12101.26 (14)H22B—C22A—H22C109.5
C13—C11—C12110.58 (18)C22B—C21B—O5100.4 (4)
C14—C11—C12111.74 (19)C22B—C21B—H21C111.7
C11—C12—H12A109.5O5—C21B—H21C111.7
C11—C12—H12B109.5C22B—C21B—H21D111.7
H12A—C12—H12B109.5O5—C21B—H21D111.7
C11—C12—H12C109.5H21C—C21B—H21D109.5
H12A—C12—H12C109.5C21B—C22B—H22D109.5
H12B—C12—H12C109.5C21B—C22B—H22E109.5
C11—C13—H13A109.5H22D—C22B—H22E109.5
C11—C13—H13B109.5C21B—C22B—H22F109.5
H13A—C13—H13B109.5H22D—C22B—H22F109.5
C11—C13—H13C109.5H22E—C22B—H22F109.5
H13A—C13—H13C109.5C9—C23—H23A109.5
H13B—C13—H13C109.5C9—C23—H23B109.5
C11—C14—H14A109.5H23A—C23—H23B109.5
C11—C14—H14B109.5C9—C23—H23C109.5
H14A—C14—H14B109.5H23A—C23—H23C109.5
C11—C14—H14C109.5H23B—C23—H23C109.5
C10—N1—C2—C3−6.4 (3)C2—N1—C10—O2−8.8 (3)
C9—N1—C2—C3175.54 (17)C9—N1—C10—O1−11.4 (2)
C10—N1—C2—C7176.75 (14)C2—N1—C10—O1171.02 (14)
C9—N1—C2—C7−1.29 (16)C10—O1—C11—C13−57.4 (2)
C7—C2—C3—C4−0.5 (3)C10—O1—C11—C1467.5 (2)
N1—C2—C3—C4−176.98 (17)C10—O1—C11—C12−174.57 (17)
C2—C3—C4—C50.8 (3)C9—C8—C15—C16−143.93 (18)
C3—C4—C5—C6−0.2 (3)C7—C8—C15—C1639.3 (3)
C4—C5—C6—C7−0.7 (3)C8—C15—C16—C20−178.54 (16)
C5—C6—C7—C20.9 (3)C8—C15—C16—C176.3 (3)
C5—C6—C7—C8176.11 (18)C18—O3—C17—O42.3 (3)
C3—C2—C7—C6−0.3 (2)C18—O3—C17—C16−177.62 (16)
N1—C2—C7—C6176.85 (14)C15—C16—C17—O4−135.4 (2)
C3—C2—C7—C8−176.65 (15)C20—C16—C17—O449.2 (3)
N1—C2—C7—C80.51 (17)C15—C16—C17—O344.5 (2)
C6—C7—C8—C9−175.13 (18)C20—C16—C17—O3−130.88 (16)
C2—C7—C8—C90.47 (18)C17—O3—C18—C19169.7 (2)
C6—C7—C8—C152.0 (3)C21B—O5—C20—O6−10.6 (5)
C2—C7—C8—C15177.64 (15)C21A—O5—C20—O613.0 (5)
C7—C8—C9—N1−1.27 (17)C21B—O5—C20—C16170.9 (5)
C15—C8—C9—N1−178.63 (14)C21A—O5—C20—C16−165.5 (4)
C7—C8—C9—C23−177.64 (15)C15—C16—C20—O6−167.6 (2)
C15—C8—C9—C235.0 (3)C17—C16—C20—O68.0 (3)
C10—N1—C9—C8−176.27 (15)C15—C16—C20—O510.9 (3)
C2—N1—C9—C81.60 (17)C17—C16—C20—O5−173.58 (18)
C10—N1—C9—C230.2 (2)C20—O5—C21A—C22A−105.2 (6)
C2—N1—C9—C23178.06 (15)C21B—O5—C21A—C22A−49.7 (9)
C11—O1—C10—O2−3.5 (3)C20—O5—C21B—C22B−176.8 (5)
C11—O1—C10—N1176.67 (14)C21A—O5—C21B—C22B48.2 (9)
C9—N1—C10—O2168.77 (17)
D—H···AD—HH···AD···AD—H···A
C23—H23C···O6i0.962.553.503 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C23—H23C⋯O6i0.962.553.503 (3)171

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Indole-3-carbinol inhibits CDK6 expression in human MCF-7 breast cancer cells by disrupting Sp1 transcription factor interactions with a composite element in the CDK6 gene promoter.

Authors:  E J Cram; B D Liu; L F Bjeldanes; G L Firestone
Journal:  J Biol Chem       Date:  2001-04-10       Impact factor: 5.157

3.  Characterization of indole-2-carboxylate derivatives as antagonists of N-methyl-D-aspartate receptor activity at the associated glycine recognition site.

Authors:  W F Hood; N M Gray; M S Dappen; G B Watson; R P Compton; A A Cordi; T H Lanthorn; J B Monahan
Journal:  J Pharmacol Exp Ther       Date:  1992-08       Impact factor: 4.030

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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