Literature DB >> 21582540

Di-tert-butyl N-[2,6-bis-(methoxy-meth-oxy)phen-yl]imino-diacetate.

Ben Capuano, Ian T Crosby, Craig M Forsyth, Yelena Khakham, David T Manallack.   

Abstract

The title mol-ecule, C(20)H(31)NO(8), has pseudo-C2 symmetry about the C-N bond, with the bis-(tert-butoxy-carbon-yl)amino group twisted from the benzene ring plane by ca 60° and the bulky tert-butoxy-carbonyl (Boc) groups are orientated away from the substituted aniline group. As part of an anti-bacterial drug discovery programme furnishing analogues of platensimycin, we unexpectedly synthesized the bis-Boc-protected aniline.

Entities:  

Year:  2009        PMID: 21582540      PMCID: PMC2968827          DOI: 10.1107/S1600536809009246

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Nicolaou et al. (2006 ▶)Khakham (2007 ▶). For related structures, see: Marino et al. (2002 ▶); Macleod et al. (2003 ▶). For the protection of amino groups in synthesis, see: ; Kshirsagar (2008 ▶).

Experimental

Crystal data

C20H31NO8 M = 413.46 Monoclinic, a = 11.2544 (3) Å b = 19.6759 (6) Å c = 9.8325 (3) Å β = 93.207 (1)° V = 2173.90 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 123 K 0.25 × 0.25 × 0.25 mm

Data collection

Bruker X8 APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.95, T max = 0.97 15504 measured reflections 4207 independent reflections 3714 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.095 S = 1.05 4207 reflections 264 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 and SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: CIFTAB (Sheldrick, 1997 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809009246/pv2145sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009246/pv2145Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H31NO8F(000) = 888
Mr = 413.46Dx = 1.263 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 15504 reflections
a = 11.2544 (3) Åθ = 2.1–26.0°
b = 19.6759 (6) ŵ = 0.10 mm1
c = 9.8325 (3) ÅT = 123 K
β = 93.207 (1)°Prism, colourless
V = 2173.90 (11) Å30.25 × 0.25 × 0.25 mm
Z = 4
Bruker X8 APEX CCD diffractometer4207 independent reflections
Radiation source: fine-focus sealed tube3714 reflections with I > 2σ(I)
graphiteRint = 0.026
Thin–slice φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −13→11
Tmin = 0.95, Tmax = 0.97k = −24→24
15504 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0455P)2 + 0.7413P] where P = (Fo2 + 2Fc2)/3
4207 reflections(Δ/σ)max < 0.001
264 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. 1H NMR (CDCl3) δ 1.45(18H, s, tert-Bu), 3.51 (6H, s, OCH3), 5.21 (4H, s, OCH2O), 6.85 (2H, d, J = 8 Hz, H3 H5), 7.21 (1H, t, J = 8 Hz, H4). 13C NMR (CDCl3) δ 27.9 (CH3), 56.0 (CH3), 82.0 (CH2), 95.0 (CH2), 108.7 (CH), 128.7 (CH), 151.5 (Cq), 162.0 (Cq). ESI MS (20 V) m/z 844 ([2M+NH4]+, 25%), 414 ([M+H]+, 26%), 358 (35%), 302 (100%), 258 (40%), 182 (39%).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.01820 (8)0.15220 (4)0.49516 (9)0.0208 (2)
O2−0.17789 (8)0.19162 (5)0.45496 (10)0.0239 (2)
O30.20418 (8)0.02812 (4)0.84955 (9)0.0222 (2)
O40.22082 (9)−0.08991 (5)0.87902 (10)0.0275 (2)
O50.32175 (8)0.04924 (4)0.57699 (9)0.0226 (2)
O60.40454 (8)0.13528 (5)0.70366 (9)0.0215 (2)
O70.10556 (8)0.22153 (4)0.75269 (9)0.0209 (2)
O80.26357 (8)0.23752 (4)0.62311 (9)0.0189 (2)
N10.20550 (9)0.13091 (5)0.66923 (10)0.0170 (2)
C10.10389 (11)0.08748 (6)0.67245 (12)0.0169 (3)
C20.00578 (11)0.09870 (6)0.58212 (12)0.0183 (3)
C3−0.09338 (12)0.05666 (6)0.58451 (14)0.0224 (3)
H3−0.16120.06460.52470.027*
C4−0.09125 (12)0.00289 (7)0.67605 (14)0.0245 (3)
H4−0.1581−0.02660.67660.029*
C50.00498 (12)−0.00910 (6)0.76637 (14)0.0228 (3)
H50.0042−0.04610.82830.027*
C60.10309 (11)0.03395 (6)0.76507 (12)0.0188 (3)
C7−0.07663 (12)0.16675 (7)0.39715 (13)0.0223 (3)
H7A−0.04890.20060.33150.027*
H7B−0.09760.12470.34590.027*
C8−0.15998 (14)0.25694 (7)0.51580 (17)0.0344 (4)
H8A−0.10330.25310.59480.052*
H8B−0.23600.27440.54520.052*
H8C−0.12840.28820.44920.052*
C90.21192 (14)−0.02718 (7)0.94256 (13)0.0283 (3)
H9A0.2824−0.02061.00610.034*
H9B0.1405−0.02710.99690.034*
C100.32667 (13)−0.09618 (8)0.80655 (16)0.0331 (3)
H10A0.3254−0.06260.73280.050*
H10B0.3310−0.14200.76810.050*
H10C0.3962−0.08820.86900.050*
C110.31523 (11)0.10078 (6)0.64174 (12)0.0174 (3)
C120.18617 (11)0.20088 (6)0.68888 (11)0.0159 (2)
C130.52977 (12)0.11794 (7)0.67929 (14)0.0246 (3)
C140.55807 (14)0.04678 (8)0.73059 (17)0.0376 (4)
H14A0.51290.01360.67410.056*
H14B0.53620.04270.82530.056*
H14C0.64340.03800.72550.056*
C150.59817 (13)0.17074 (9)0.76495 (17)0.0393 (4)
H15A0.58300.16400.86120.059*
H15B0.57210.21630.73650.059*
H15C0.68350.16590.75240.059*
C160.55154 (13)0.12683 (9)0.53009 (15)0.0351 (4)
H16A0.50670.09230.47670.053*
H16B0.63670.12170.51650.053*
H16C0.52530.17220.50030.053*
C170.26643 (12)0.31241 (6)0.63900 (13)0.0200 (3)
C180.15042 (12)0.34337 (7)0.58381 (13)0.0238 (3)
H18A0.13600.33040.48810.036*
H18B0.15510.39300.59100.036*
H18C0.08510.32670.63660.036*
C190.36707 (13)0.33176 (7)0.54976 (16)0.0295 (3)
H19A0.34530.31970.45490.044*
H19B0.43950.30730.58040.044*
H19C0.38130.38080.55630.044*
C200.29631 (14)0.33007 (7)0.78745 (14)0.0310 (3)
H20A0.37210.30880.81740.047*
H20B0.23320.31330.84340.047*
H20C0.30290.37950.79730.047*
U11U22U33U12U13U23
O10.0161 (5)0.0216 (5)0.0245 (5)−0.0008 (4)−0.0005 (4)0.0046 (4)
O20.0167 (5)0.0224 (5)0.0325 (5)0.0018 (4)0.0003 (4)−0.0031 (4)
O30.0259 (5)0.0183 (5)0.0222 (4)0.0018 (4)−0.0017 (4)0.0016 (3)
O40.0336 (6)0.0189 (5)0.0300 (5)0.0040 (4)0.0022 (4)0.0032 (4)
O50.0207 (5)0.0203 (5)0.0269 (5)0.0022 (4)0.0023 (4)−0.0058 (4)
O60.0128 (5)0.0250 (5)0.0265 (5)0.0006 (4)−0.0003 (4)−0.0060 (4)
O70.0225 (5)0.0181 (4)0.0227 (4)0.0014 (4)0.0074 (4)−0.0008 (3)
O80.0200 (5)0.0143 (4)0.0227 (4)−0.0020 (3)0.0056 (4)−0.0010 (3)
N10.0135 (5)0.0146 (5)0.0230 (5)0.0002 (4)0.0017 (4)−0.0006 (4)
C10.0150 (6)0.0138 (6)0.0222 (6)−0.0001 (5)0.0047 (5)−0.0026 (5)
C20.0176 (7)0.0157 (6)0.0219 (6)0.0022 (5)0.0050 (5)−0.0013 (5)
C30.0150 (7)0.0208 (6)0.0314 (7)0.0007 (5)0.0024 (5)−0.0028 (5)
C40.0177 (7)0.0174 (6)0.0394 (8)−0.0031 (5)0.0102 (6)−0.0032 (5)
C50.0251 (7)0.0142 (6)0.0302 (7)0.0006 (5)0.0114 (6)0.0019 (5)
C60.0203 (7)0.0159 (6)0.0205 (6)0.0038 (5)0.0042 (5)−0.0032 (5)
C70.0195 (7)0.0260 (7)0.0210 (6)0.0024 (5)−0.0016 (5)−0.0002 (5)
C80.0310 (9)0.0256 (7)0.0462 (9)0.0045 (6)−0.0015 (7)−0.0094 (6)
C90.0428 (9)0.0222 (7)0.0197 (6)0.0051 (6)0.0017 (6)0.0033 (5)
C100.0296 (8)0.0281 (8)0.0415 (8)0.0070 (6)0.0001 (6)−0.0030 (6)
C110.0158 (7)0.0188 (6)0.0175 (6)0.0001 (5)0.0020 (5)0.0025 (5)
C120.0170 (6)0.0156 (6)0.0149 (5)−0.0004 (5)−0.0011 (5)−0.0001 (4)
C130.0123 (7)0.0344 (8)0.0269 (7)0.0022 (5)0.0004 (5)−0.0017 (6)
C140.0230 (8)0.0432 (9)0.0461 (9)0.0101 (7)−0.0037 (7)0.0073 (7)
C150.0194 (8)0.0537 (10)0.0445 (9)−0.0062 (7)−0.0029 (7)−0.0104 (8)
C160.0192 (8)0.0569 (10)0.0295 (8)−0.0030 (7)0.0037 (6)0.0026 (7)
C170.0243 (7)0.0125 (6)0.0235 (6)−0.0036 (5)0.0021 (5)−0.0007 (5)
C180.0275 (8)0.0195 (6)0.0249 (6)0.0018 (5)0.0046 (5)0.0037 (5)
C190.0261 (8)0.0219 (7)0.0413 (8)−0.0044 (6)0.0085 (6)0.0039 (6)
C200.0412 (9)0.0235 (7)0.0275 (7)−0.0060 (6)−0.0066 (6)−0.0038 (6)
O1—C21.3683 (15)C8—H8C0.9800
O1—C71.4264 (15)C9—H9A0.9900
O2—C71.3907 (16)C9—H9B0.9900
O2—C81.4272 (16)C10—H10A0.9800
O3—C61.3754 (16)C10—H10B0.9800
O3—C91.4210 (15)C10—H10C0.9800
O4—C91.3894 (16)C13—C161.5109 (19)
O4—C101.4272 (18)C13—C141.516 (2)
O5—C111.2017 (15)C13—C151.519 (2)
O6—C111.3317 (15)C14—H14A0.9800
O6—C131.4825 (16)C14—H14B0.9800
O7—C121.2023 (15)C14—H14C0.9800
O8—C121.3266 (15)C15—H15A0.9800
O8—C171.4820 (14)C15—H15B0.9800
N1—C121.4088 (15)C15—H15C0.9800
N1—C111.4096 (16)C16—H16A0.9800
N1—C11.4292 (16)C16—H16B0.9800
C1—C61.3928 (17)C16—H16C0.9800
C1—C21.3954 (18)C17—C181.5136 (19)
C2—C31.3903 (18)C17—C191.5195 (18)
C3—C41.3884 (19)C17—C201.5196 (18)
C3—H30.9500C18—H18A0.9800
C4—C51.382 (2)C18—H18B0.9800
C4—H40.9500C18—H18C0.9800
C5—C61.3923 (18)C19—H19A0.9800
C5—H50.9500C19—H19B0.9800
C7—H7A0.9900C19—H19C0.9800
C7—H7B0.9900C20—H20A0.9800
C8—H8A0.9800C20—H20B0.9800
C8—H8B0.9800C20—H20C0.9800
C2—O1—C7118.55 (10)O6—C11—N1110.18 (10)
C7—O2—C8112.86 (11)O7—C12—O8127.29 (11)
C6—O3—C9118.13 (10)O7—C12—N1121.92 (11)
C9—O4—C10112.61 (11)O8—C12—N1110.71 (10)
C11—O6—C13120.59 (10)O6—C13—C16109.73 (11)
C12—O8—C17120.00 (9)O6—C13—C14110.04 (11)
C12—N1—C11125.51 (10)C16—C13—C14112.79 (13)
C12—N1—C1116.83 (10)O6—C13—C15102.12 (11)
C11—N1—C1117.61 (10)C16—C13—C15110.76 (13)
C6—C1—C2120.13 (11)C14—C13—C15110.89 (13)
C6—C1—N1120.07 (11)C13—C14—H14A109.5
C2—C1—N1119.80 (11)C13—C14—H14B109.5
O1—C2—C3125.34 (12)H14A—C14—H14B109.5
O1—C2—C1114.49 (11)C13—C14—H14C109.5
C3—C2—C1120.17 (12)H14A—C14—H14C109.5
C4—C3—C2118.65 (12)H14B—C14—H14C109.5
C4—C3—H3120.7C13—C15—H15A109.5
C2—C3—H3120.7C13—C15—H15B109.5
C5—C4—C3122.09 (12)H15A—C15—H15B109.5
C5—C4—H4119.0C13—C15—H15C109.5
C3—C4—H4119.0H15A—C15—H15C109.5
C4—C5—C6118.93 (12)H15B—C15—H15C109.5
C4—C5—H5120.5C13—C16—H16A109.5
C6—C5—H5120.5C13—C16—H16B109.5
O3—C6—C5124.99 (11)H16A—C16—H16B109.5
O3—C6—C1115.00 (11)C13—C16—H16C109.5
C5—C6—C1120.01 (12)H16A—C16—H16C109.5
O2—C7—O1113.19 (10)H16B—C16—H16C109.5
O2—C7—H7A108.9O8—C17—C18110.43 (10)
O1—C7—H7A108.9O8—C17—C19101.58 (10)
O2—C7—H7B108.9C18—C17—C19110.37 (11)
O1—C7—H7B108.9O8—C17—C20109.33 (10)
H7A—C7—H7B107.8C18—C17—C20113.10 (11)
O2—C8—H8A109.5C19—C17—C20111.43 (12)
O2—C8—H8B109.5C17—C18—H18A109.5
H8A—C8—H8B109.5C17—C18—H18B109.5
O2—C8—H8C109.5H18A—C18—H18B109.5
H8A—C8—H8C109.5C17—C18—H18C109.5
H8B—C8—H8C109.5H18A—C18—H18C109.5
O4—C9—O3113.22 (10)H18B—C18—H18C109.5
O4—C9—H9A108.9C17—C19—H19A109.5
O3—C9—H9A108.9C17—C19—H19B109.5
O4—C9—H9B108.9H19A—C19—H19B109.5
O3—C9—H9B108.9C17—C19—H19C109.5
H9A—C9—H9B107.7H19A—C19—H19C109.5
O4—C10—H10A109.5H19B—C19—H19C109.5
O4—C10—H10B109.5C17—C20—H20A109.5
H10A—C10—H10B109.5C17—C20—H20B109.5
O4—C10—H10C109.5H20A—C20—H20B109.5
H10A—C10—H10C109.5C17—C20—H20C109.5
H10B—C10—H10C109.5H20A—C20—H20C109.5
O5—C11—O6127.26 (12)H20B—C20—H20C109.5
O5—C11—N1122.45 (11)
C2—C1—N1—C1257.65 (15)C6—C1—N1—C1159.68 (15)
  4 in total

1.  Total synthesis of platensimycin.

Authors:  K C Nicolaou; Ang Li; David J Edmonds
Journal:  Angew Chem Int Ed Engl       Date:  2006-10-27       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Total synthesis of (+)-aspidospermidine: a new strategy for the enantiospecific synthesis of aspidosperma alkaloids.

Authors:  Joseph P Marino; Maria B Rubio; Ganfeng Cao; Alfonso de Dios
Journal:  J Am Chem Soc       Date:  2002-11-13       Impact factor: 15.419

4.  Synthesis of 2-substituted benzofurans and indoles using functionalized titanium benzylidene reagents on solid phase.

Authors:  Calum Macleod; Gordon J McKiernan; Emma J Guthrie; Louis J Farrugia; Dieter W Hamprecht; Jackie Macritchie; Richard C Hartley
Journal:  J Org Chem       Date:  2003-01-24       Impact factor: 4.354

  4 in total

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