Literature DB >> 21582511

N-(2-Pyridylmethyleneamino)dehydro-abietylamine.

Yong Wu, Xiao-Ping Rao, Zong-De Wang, Zhan-Qian Song, Xu-Jie Yao.   

Abstract

The title compound {systematic name: 1-[(1R,4aS,10aR)-7-isopropyl-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthren-1-yl]-N-[(E)-2-pyridylmethyleneamino]methanamine}, C(26)H(33)N(2), has been synthesized from dehydro-abietylamine. The two cyclo-hexane rings form a trans ring junction with classic chair and half-chair conformations, respectively, whereas the benzene and pyridine rings are almost planar, and the dihedral angle between them is 80.4°. The two methyl groups directly attached to the tricyclic nucleus are on the same side of the tricyclic hydro-phenanthrene structure.

Entities:  

Year:  2009        PMID: 21582511      PMCID: PMC2968828          DOI: 10.1107/S1600536809009040

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of a related compound, , see: Cannon (1952 ▶); Heinrich (1981 ▶); Kalser & Scheer (1976 ▶); Rao, Song & He (2008 ▶); Rao, Song, He & Jia (2008 ▶); Wilkerson et al. (1991 ▶, 1993 ▶). For the crystal structure of a related compound, see: Rao et al. (2006 ▶, 2007 ▶); Rao, Song, Jia & Shang (2008 ▶).

Experimental

Crystal data

C26H33N2 M = 373.54 Monoclinic, a = 11.294 (2) Å b = 6.0870 (12) Å c = 16.129 (3) Å β = 98.71 (3)° V = 1096.0 (4) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.951, T max = 0.974 2478 measured reflections 2357 independent reflections 1434 reflections with I > 2σ(I) R int = 0.045 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.188 S = 1.00 2357 reflections 253 parameters 1 restraint H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXL97; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809009040/at2704sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009040/at2704Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H33N2F(000) = 406
Mr = 373.54Dx = 1.132 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 11.294 (2) Åθ = 10–13°
b = 6.0870 (12) ŵ = 0.07 mm1
c = 16.129 (3) ÅT = 293 K
β = 98.71 (3)°Block, white
V = 1096.0 (4) Å30.30 × 0.20 × 0.10 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer1434 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.045
graphiteθmax = 26.0°, θmin = 1.3°
ω/2θ scansh = 0→13
Absorption correction: ψ scan (North et al., 1968)k = 0→7
Tmin = 0.951, Tmax = 0.974l = −19→19
2478 measured reflections3 standard reflections every 200 reflections
2357 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2357 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.19 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2116 (4)0.1781 (8)−0.1368 (2)0.0616 (12)
N20.0270 (5)0.4047 (9)−0.3125 (3)0.0814 (15)
C10.6341 (7)0.9761 (12)0.3876 (4)0.108 (3)
H1B0.56471.05190.35980.162*
H1C0.68610.94070.34770.162*
H1D0.67581.06840.43070.162*
C20.7016 (5)0.6441 (12)0.4723 (4)0.088 (2)
H2B0.67500.51390.49750.132*
H2C0.74360.73690.51510.132*
H2D0.75430.60410.43330.132*
C30.5953 (5)0.7653 (10)0.4268 (3)0.0653 (15)
H3A0.54690.80990.46950.078*
C40.5153 (5)0.6250 (9)0.3642 (3)0.0560 (14)
C50.3996 (4)0.5769 (10)0.3732 (3)0.0602 (15)
H5A0.36900.63030.41970.072*
C60.3280 (4)0.4524 (9)0.3157 (3)0.0541 (13)
H6A0.24950.42610.32390.065*
C70.3671 (4)0.3638 (8)0.2458 (3)0.0455 (11)
C80.4870 (4)0.4045 (9)0.2362 (3)0.0519 (12)
C90.5572 (4)0.5346 (10)0.2954 (3)0.0604 (14)
H9A0.63600.56230.28830.072*
C100.2857 (4)0.2215 (8)0.1825 (3)0.0444 (11)
C110.3278 (4)0.2466 (8)0.0964 (2)0.0433 (10)
H11A0.32900.40540.08650.052*
C120.4589 (4)0.1745 (10)0.1029 (3)0.0636 (15)
H12A0.46580.02180.12000.076*
H12B0.48400.18630.04820.076*
C130.5392 (5)0.3102 (14)0.1640 (3)0.092 (2)
H13A0.61850.33560.15760.110*
C140.1547 (4)0.2973 (9)0.1759 (3)0.0534 (13)
H14A0.12600.26720.22840.064*
H14B0.15070.45470.16660.064*
C150.0736 (4)0.1820 (11)0.1046 (3)0.0639 (15)
H15A0.07390.02510.11520.077*
H15B−0.00780.23490.10220.077*
C160.1160 (4)0.2251 (9)0.0222 (3)0.0538 (13)
H16A0.10990.38140.01060.065*
H16B0.06290.1501−0.02170.065*
C170.2442 (4)0.1517 (8)0.0188 (3)0.0482 (12)
C180.2950 (5)−0.0156 (9)0.2187 (3)0.0686 (16)
H18A0.2672−0.01710.27210.103*
H18B0.3769−0.06330.22560.103*
H18C0.2466−0.11280.18080.103*
C190.2519 (5)−0.1014 (9)0.0118 (3)0.0617 (15)
H19A0.2274−0.16780.06040.093*
H19B0.3329−0.14320.00820.093*
H19C0.2002−0.1500−0.03760.093*
C200.2829 (4)0.2563 (10)−0.0602 (3)0.0568 (13)
H20A0.27530.4147−0.05710.068*
H20B0.36650.2223−0.06150.068*
C210.1584 (5)0.3134 (10)−0.1878 (3)0.0612 (14)
H21A0.16540.4626−0.17560.073*
C220.0852 (4)0.2423 (10)−0.2665 (3)0.0559 (13)
C23−0.0394 (6)0.3452 (14)−0.3848 (4)0.094 (2)
H23A−0.08070.4544−0.41760.113*
C24−0.0503 (6)0.1341 (14)−0.4132 (4)0.085 (2)
H24A−0.09810.1010−0.46380.102*
C250.0104 (6)−0.0273 (12)−0.3659 (4)0.0780 (18)
H25A0.0054−0.1723−0.38430.094*
C260.0784 (5)0.0259 (11)−0.2916 (3)0.0672 (15)
H26A0.1196−0.0824−0.25820.081*
U11U22U33U12U13U23
N10.074 (3)0.052 (3)0.055 (2)−0.001 (2)0.000 (2)−0.007 (2)
N20.091 (4)0.069 (4)0.079 (3)0.008 (3)−0.008 (3)0.003 (3)
C10.152 (7)0.067 (5)0.095 (5)−0.038 (5)−0.014 (4)−0.001 (4)
C20.084 (4)0.077 (5)0.092 (4)−0.001 (4)−0.027 (3)−0.013 (4)
C30.073 (4)0.058 (4)0.062 (3)−0.005 (3)0.003 (3)−0.007 (3)
C40.067 (3)0.047 (3)0.049 (3)0.006 (3)−0.006 (2)−0.003 (2)
C50.066 (3)0.063 (4)0.051 (3)0.004 (3)0.008 (3)−0.001 (3)
C60.056 (3)0.052 (3)0.054 (3)−0.001 (3)0.005 (2)0.007 (3)
C70.055 (3)0.037 (3)0.043 (2)0.002 (2)0.004 (2)0.009 (2)
C80.050 (3)0.053 (3)0.051 (3)−0.002 (3)0.001 (2)−0.005 (3)
C90.049 (3)0.066 (4)0.064 (3)−0.012 (3)0.002 (2)0.005 (3)
C100.044 (2)0.033 (3)0.054 (2)−0.001 (2)0.003 (2)0.009 (2)
C110.046 (2)0.033 (2)0.050 (2)−0.001 (2)0.0013 (19)0.001 (2)
C120.049 (3)0.075 (4)0.066 (3)−0.001 (3)0.006 (2)−0.016 (3)
C130.049 (3)0.146 (7)0.083 (4)−0.026 (4)0.020 (3)−0.055 (5)
C140.050 (3)0.052 (3)0.060 (3)0.000 (2)0.013 (2)0.004 (3)
C150.043 (2)0.078 (4)0.069 (3)−0.001 (3)0.000 (2)0.001 (3)
C160.049 (3)0.047 (3)0.061 (3)0.000 (3)−0.005 (2)0.005 (3)
C170.055 (3)0.030 (2)0.059 (3)−0.002 (2)0.005 (2)−0.001 (2)
C180.087 (4)0.046 (3)0.068 (3)−0.012 (3)−0.002 (3)0.019 (3)
C190.067 (3)0.041 (3)0.073 (3)−0.003 (3)−0.002 (3)−0.004 (3)
C200.067 (3)0.050 (3)0.053 (3)−0.008 (3)0.005 (2)−0.002 (3)
C210.068 (3)0.054 (3)0.061 (3)−0.001 (3)0.008 (3)−0.006 (3)
C220.061 (3)0.053 (3)0.053 (3)0.002 (3)0.007 (2)0.006 (3)
C230.089 (5)0.088 (6)0.094 (5)0.014 (4)−0.021 (4)0.016 (5)
C240.087 (4)0.098 (6)0.065 (4)−0.029 (4)−0.001 (3)0.001 (4)
C250.102 (5)0.063 (4)0.067 (4)−0.014 (4)0.008 (3)−0.005 (4)
C260.076 (4)0.060 (4)0.064 (3)−0.005 (3)0.007 (3)0.003 (3)
N1—C211.251 (6)C12—H12A0.9700
N1—C201.449 (6)C12—H12B0.9700
N2—C231.337 (8)C13—H13A0.9300
N2—C221.345 (7)C14—C151.528 (7)
C1—C31.523 (9)C14—H14A0.9700
C1—H1B0.9600C14—H14B0.9700
C1—H1C0.9600C15—C161.501 (6)
C1—H1D0.9600C15—H15A0.9700
C2—C31.502 (8)C15—H15B0.9700
C2—H2B0.9600C16—C171.524 (6)
C2—H2C0.9600C16—H16A0.9700
C2—H2D0.9600C16—H16B0.9700
C3—C41.513 (7)C17—C201.545 (7)
C3—H3A0.9800C17—C191.548 (7)
C4—C51.368 (7)C18—H18A0.9600
C4—C91.386 (7)C18—H18B0.9600
C5—C61.364 (7)C18—H18C0.9600
C5—H5A0.9300C19—H19A0.9600
C6—C71.381 (6)C19—H19B0.9600
C6—H6A0.9300C19—H19C0.9600
C7—C81.407 (6)C20—H20A0.9700
C7—C101.534 (6)C20—H20B0.9700
C8—C91.392 (7)C21—C221.473 (7)
C8—C131.498 (7)C21—H21A0.9300
C9—H9A0.9300C22—C261.376 (8)
C10—C141.537 (6)C23—C241.363 (10)
C10—C111.543 (6)C23—H23A0.9300
C10—C181.555 (7)C24—C251.363 (9)
C11—C121.532 (6)C24—H24A0.9300
C11—C171.560 (6)C25—C261.361 (8)
C11—H11A0.9800C25—H25A0.9300
C12—C131.485 (7)C26—H26A0.9300
C21—N1—C20119.6 (5)C15—C14—H14A109.2
C23—N2—C22116.4 (6)C10—C14—H14A109.2
C3—C1—H1B109.5C15—C14—H14B109.2
C3—C1—H1C109.5C10—C14—H14B109.2
H1B—C1—H1C109.5H14A—C14—H14B107.9
C3—C1—H1D109.5C16—C15—C14110.5 (4)
H1B—C1—H1D109.5C16—C15—H15A109.5
H1C—C1—H1D109.5C14—C15—H15A109.5
C3—C2—H2B109.5C16—C15—H15B109.5
C3—C2—H2C109.5C14—C15—H15B109.5
H2B—C2—H2C109.5H15A—C15—H15B108.1
C3—C2—H2D109.5C15—C16—C17114.4 (4)
H2B—C2—H2D109.5C15—C16—H16A108.7
H2C—C2—H2D109.5C17—C16—H16A108.7
C2—C3—C4113.7 (5)C15—C16—H16B108.7
C2—C3—C1110.9 (6)C17—C16—H16B108.7
C4—C3—C1112.2 (4)H16A—C16—H16B107.6
C2—C3—H3A106.5C16—C17—C20107.4 (4)
C4—C3—H3A106.5C16—C17—C19111.0 (4)
C1—C3—H3A106.5C20—C17—C19108.9 (4)
C5—C4—C9116.6 (5)C16—C17—C11108.9 (4)
C5—C4—C3122.3 (5)C20—C17—C11107.2 (4)
C9—C4—C3121.1 (5)C19—C17—C11113.1 (4)
C6—C5—C4121.6 (5)C10—C18—H18A109.5
C6—C5—H5A119.2C10—C18—H18B109.5
C4—C5—H5A119.2H18A—C18—H18B109.5
C5—C6—C7122.8 (5)C10—C18—H18C109.5
C5—C6—H6A118.6H18A—C18—H18C109.5
C7—C6—H6A118.6H18B—C18—H18C109.5
C6—C7—C8116.9 (4)C17—C19—H19A109.5
C6—C7—C10122.0 (4)C17—C19—H19B109.5
C8—C7—C10121.1 (4)H19A—C19—H19B109.5
C9—C8—C7118.9 (4)C17—C19—H19C109.5
C9—C8—C13120.0 (4)H19A—C19—H19C109.5
C7—C8—C13121.1 (4)H19B—C19—H19C109.5
C4—C9—C8123.2 (5)N1—C20—C17112.2 (4)
C4—C9—H9A118.4N1—C20—H20A109.2
C8—C9—H9A118.4C17—C20—H20A109.2
C7—C10—C14110.5 (4)N1—C20—H20B109.2
C7—C10—C11107.9 (3)C17—C20—H20B109.2
C14—C10—C11109.4 (3)H20A—C20—H20B107.9
C7—C10—C18105.9 (3)N1—C21—C22121.6 (5)
C14—C10—C18108.3 (4)N1—C21—H21A119.2
C11—C10—C18114.7 (4)C22—C21—H21A119.2
C12—C11—C10109.6 (4)N2—C22—C26122.7 (5)
C12—C11—C17114.2 (4)N2—C22—C21115.0 (5)
C10—C11—C17117.0 (4)C26—C22—C21122.2 (5)
C12—C11—H11A104.9N2—C23—C24123.9 (7)
C10—C11—H11A104.9N2—C23—H23A118.0
C17—C11—H11A104.9C24—C23—H23A118.0
C13—C12—C11111.9 (5)C25—C24—C23118.6 (6)
C13—C12—H12A109.2C25—C24—H24A120.7
C11—C12—H12A109.2C23—C24—H24A120.7
C13—C12—H12B109.2C26—C25—C24119.4 (7)
C11—C12—H12B109.2C26—C25—H25A120.3
H12A—C12—H12B107.9C24—C25—H25A120.3
C12—C13—C8117.2 (4)C25—C26—C22119.0 (6)
C12—C13—H13A121.4C25—C26—H26A120.5
C8—C13—H13A121.4C22—C26—H26A120.5
C15—C14—C10112.1 (4)
C2—C3—C4—C5115.6 (6)C9—C8—C13—C12−179.5 (6)
C1—C3—C4—C5−117.5 (6)C7—C8—C13—C120.5 (9)
C2—C3—C4—C9−63.0 (7)C7—C10—C14—C15171.7 (4)
C1—C3—C4—C963.9 (7)C11—C10—C14—C1553.0 (5)
C9—C4—C5—C6−2.2 (8)C18—C10—C14—C15−72.6 (5)
C3—C4—C5—C6179.2 (5)C10—C14—C15—C16−58.8 (6)
C4—C5—C6—C71.1 (8)C14—C15—C16—C1758.4 (6)
C5—C6—C7—C80.9 (7)C15—C16—C17—C20−166.7 (4)
C5—C6—C7—C10179.1 (5)C15—C16—C17—C1974.4 (6)
C6—C7—C8—C9−1.8 (7)C15—C16—C17—C11−50.8 (6)
C10—C7—C8—C9180.0 (5)C12—C11—C17—C16176.9 (4)
C6—C7—C8—C13178.2 (5)C10—C11—C17—C1646.9 (5)
C10—C7—C8—C130.0 (8)C12—C11—C17—C20−67.1 (5)
C5—C4—C9—C81.3 (8)C10—C11—C17—C20162.8 (4)
C3—C4—C9—C8179.9 (5)C12—C11—C17—C1952.9 (6)
C7—C8—C9—C40.7 (8)C10—C11—C17—C19−77.1 (5)
C13—C8—C9—C4−179.2 (6)C21—N1—C20—C17124.8 (5)
C6—C7—C10—C1432.6 (6)C16—C17—C20—N1−63.6 (5)
C8—C7—C10—C14−149.3 (4)C19—C17—C20—N156.7 (6)
C6—C7—C10—C11152.2 (4)C11—C17—C20—N1179.5 (4)
C8—C7—C10—C11−29.7 (6)C20—N1—C21—C22179.8 (4)
C6—C7—C10—C18−84.5 (5)C23—N2—C22—C260.3 (9)
C8—C7—C10—C1893.6 (5)C23—N2—C22—C21179.4 (5)
C7—C10—C11—C1258.8 (5)N1—C21—C22—N2175.8 (5)
C14—C10—C11—C12179.2 (4)N1—C21—C22—C26−5.1 (8)
C18—C10—C11—C12−59.0 (5)C22—N2—C23—C24−0.2 (11)
C7—C10—C11—C17−169.0 (4)N2—C23—C24—C25−0.4 (12)
C14—C10—C11—C17−48.7 (5)C23—C24—C25—C260.9 (10)
C18—C10—C11—C1773.2 (5)C24—C25—C26—C22−0.7 (9)
C10—C11—C12—C13−60.7 (6)N2—C22—C26—C250.1 (9)
C17—C11—C12—C13165.7 (5)C21—C22—C26—C25−178.9 (5)
C11—C12—C13—C829.8 (8)
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