Literature DB >> 21582508

Gabapentinium picrate.

Hongqi Li, H S Yathirajan, L Mallesha, K N Mohana, B Narayana.   

Abstract

The title compound {systematic name: [1-(carboxy-meth-yl)cyclo-hexyl]methanaminium 2,4,6-trinitro-phenolate}, C(9)H(18)NO(2) (+)·C(6)H(2)N(3)O(7) (-), was synthesized from picric acid and gabapentin. The crystal packing is stabilized by intra-molecular N-H⋯O=N and N-H⋯O-Ph hydrogen bonds. An O-H⋯O inter-action is also present.

Entities:  

Year:  2009        PMID: 21582508      PMCID: PMC2969093          DOI: 10.1107/S1600536809008952

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background, see: Bryans & Wustrow (1999 ▶). For related structures, see: Ibers (2001 ▶); Swamy et al. (2007 ▶) and references cited therein.

Experimental

Crystal data

C9H18NO2 +·C6H2N3O7 − M = 400.35 Monoclinic, a = 11.576 (2) Å b = 7.7312 (16) Å c = 19.973 (4) Å β = 91.425 (2)° V = 1787.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.25 × 0.25 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.970, T max = 0.976 8899 measured reflections 3150 independent reflections 2408 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.182 S = 1.07 3150 reflections 256 parameters H-atom parameters constrained Δρmax = 1.06 e Å−3 Δρmin = −0.55 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008952/cs2105sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008952/cs2105Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H18NO2+·C6H2N3O7F(000) = 840
Mr = 400.35Dx = 1.488 Mg m3
Monoclinic, P21/nMelting point = 431–434 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 11.576 (2) ÅCell parameters from 2666 reflections
b = 7.7312 (16) Åθ = 2.8–25.1°
c = 19.973 (4) ŵ = 0.12 mm1
β = 91.425 (2)°T = 296 K
V = 1787.0 (6) Å3Block, yellow
Z = 40.25 × 0.25 × 0.20 mm
Bruker SMART CCD area-detector diffractometer3150 independent reflections
Radiation source: fine-focus sealed tube2408 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 25.1°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −12→13
Tmin = 0.970, Tmax = 0.976k = −7→9
8899 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H-atom parameters constrained
wR(F2) = 0.182w = 1/[σ2(Fo2) + (0.083P)2 + 1.5949P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3150 reflectionsΔρmax = 1.06 e Å3
256 parametersΔρmin = −0.55 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.075 (5)
xyzUiso*/Ueq
C10.2919 (2)0.3970 (4)0.05392 (13)0.0375 (6)
C20.3067 (2)0.5162 (3)0.10930 (13)0.0362 (6)
C30.3639 (2)0.6728 (3)0.08832 (16)0.0432 (7)
C40.3949 (2)0.7066 (4)0.02348 (17)0.0499 (8)
H40.43230.80930.01310.060*
C50.3701 (2)0.5869 (4)−0.02563 (15)0.0466 (8)
C60.3199 (2)0.4315 (4)−0.01060 (14)0.0433 (7)
H60.30520.3503−0.04410.052*
C70.4810 (2)0.6530 (3)0.67642 (12)0.0328 (6)
C80.5192 (2)0.4847 (3)0.71209 (13)0.0372 (6)
H8A0.60300.48110.71440.045*
H8B0.49200.48710.75760.045*
C90.4752 (3)0.3205 (4)0.67810 (17)0.0521 (8)
H9A0.51120.30840.63500.063*
H9B0.49720.22130.70530.063*
C100.3458 (3)0.3223 (5)0.6679 (2)0.0727 (11)
H10A0.30930.32140.71110.087*
H10B0.32160.21920.64370.087*
C110.3074 (3)0.4818 (5)0.6289 (2)0.0664 (10)
H11A0.22370.48330.62470.080*
H11B0.33810.47710.58420.080*
C120.3490 (3)0.6467 (4)0.66370 (16)0.0502 (8)
H12A0.31090.65690.70620.060*
H12B0.32610.74530.63640.060*
C130.5043 (3)0.8069 (4)0.72276 (14)0.0429 (7)
H13A0.48660.91220.69820.051*
H13B0.45170.80030.75970.051*
C140.5472 (2)0.6665 (3)0.61064 (12)0.0354 (6)
H14A0.62900.66690.62220.042*
H14B0.53190.56150.58530.042*
C150.5244 (2)0.8160 (3)0.56474 (13)0.0365 (6)
N10.2450 (3)0.2259 (3)0.06681 (13)0.0530 (7)
N20.3944 (3)0.8022 (3)0.13862 (17)0.0582 (8)
N30.4040 (2)0.6182 (5)−0.09448 (17)0.0633 (9)
N40.6251 (2)0.8199 (3)0.75081 (12)0.0490 (7)
H4A0.64430.72100.77100.074*
H4B0.62920.90600.78030.074*
H4C0.67340.84040.71780.074*
O10.1815 (4)0.1631 (5)0.02309 (16)0.1380 (18)
O20.2579 (2)0.1585 (3)0.11974 (12)0.0681 (8)
O30.2754 (2)0.4861 (3)0.16754 (10)0.0492 (6)
O40.3311 (2)0.8242 (3)0.18624 (13)0.0638 (7)
O50.4804 (3)0.8876 (4)0.1315 (2)0.1066 (12)
O60.4584 (2)0.7510 (5)−0.10551 (16)0.0911 (10)
O70.3773 (3)0.5105 (5)−0.13704 (14)0.0893 (10)
O80.4688 (2)0.9447 (3)0.57786 (10)0.0609 (7)
O90.5759 (2)0.7959 (3)0.50733 (11)0.0616 (7)
H90.55760.87540.48200.092*
U11U22U33U12U13U23
C10.0436 (15)0.0344 (14)0.0344 (14)−0.0022 (12)−0.0046 (11)0.0041 (11)
C20.0400 (14)0.0318 (14)0.0364 (15)0.0020 (11)−0.0054 (11)0.0019 (11)
C30.0420 (15)0.0297 (14)0.0575 (18)−0.0008 (12)−0.0075 (13)0.0030 (13)
C40.0384 (16)0.0382 (16)0.073 (2)0.0036 (13)0.0079 (14)0.0239 (16)
C50.0394 (15)0.0549 (19)0.0457 (16)0.0112 (14)0.0059 (12)0.0156 (15)
C60.0428 (16)0.0514 (18)0.0356 (15)0.0031 (13)−0.0026 (12)0.0021 (13)
C70.0415 (14)0.0297 (13)0.0271 (13)0.0035 (11)0.0006 (10)0.0015 (10)
C80.0490 (16)0.0323 (14)0.0301 (14)−0.0001 (12)−0.0014 (11)0.0044 (11)
C90.073 (2)0.0313 (16)0.0520 (18)−0.0097 (15)−0.0040 (15)0.0041 (13)
C100.076 (3)0.058 (2)0.084 (3)−0.031 (2)0.002 (2)0.004 (2)
C110.0460 (19)0.078 (3)0.074 (2)−0.0127 (18)−0.0084 (16)−0.001 (2)
C120.0416 (16)0.059 (2)0.0505 (18)0.0065 (14)0.0054 (13)0.0072 (15)
C130.0624 (19)0.0337 (15)0.0325 (14)0.0073 (13)0.0012 (13)−0.0009 (11)
C140.0466 (15)0.0311 (14)0.0285 (13)0.0016 (11)0.0016 (11)0.0015 (10)
C150.0480 (16)0.0346 (15)0.0268 (13)−0.0010 (12)−0.0009 (11)0.0005 (11)
N10.0781 (19)0.0435 (15)0.0369 (14)−0.0202 (13)−0.0054 (12)−0.0054 (12)
N20.0603 (17)0.0320 (14)0.082 (2)−0.0054 (13)−0.0139 (16)−0.0025 (14)
N30.0510 (16)0.078 (2)0.0612 (19)0.0195 (16)0.0141 (14)0.0320 (18)
N40.0808 (19)0.0321 (13)0.0337 (13)−0.0104 (12)−0.0085 (12)−0.0038 (10)
O10.240 (5)0.111 (3)0.0613 (19)−0.105 (3)−0.031 (2)0.0042 (18)
O20.0992 (19)0.0492 (14)0.0547 (15)−0.0240 (13)−0.0203 (13)0.0170 (11)
O30.0769 (15)0.0367 (11)0.0340 (11)−0.0009 (10)0.0009 (10)0.0000 (8)
O40.0849 (18)0.0401 (13)0.0655 (16)0.0009 (12)−0.0174 (14)−0.0124 (11)
O50.089 (2)0.072 (2)0.159 (3)−0.0438 (18)0.005 (2)−0.029 (2)
O60.0774 (19)0.101 (2)0.096 (2)0.0071 (17)0.0278 (16)0.0562 (19)
O70.106 (2)0.116 (3)0.0471 (15)0.016 (2)0.0227 (15)0.0115 (17)
O80.1037 (19)0.0422 (13)0.0375 (12)0.0242 (13)0.0137 (11)0.0090 (10)
O90.0925 (18)0.0544 (14)0.0389 (12)0.0224 (13)0.0198 (11)0.0148 (10)
C1—C61.363 (4)C10—H10B0.9700
C1—C21.447 (4)C11—C121.524 (5)
C1—N11.455 (4)C11—H11A0.9700
C2—O31.249 (3)C11—H11B0.9700
C2—C31.447 (4)C12—H12A0.9700
C3—C41.377 (4)C12—H12B0.9700
C3—N21.455 (4)C13—N41.497 (4)
C4—C51.374 (5)C13—H13A0.9700
C4—H40.9300C13—H13B0.9700
C5—C61.371 (4)C14—C151.495 (4)
C5—N31.460 (4)C14—H14A0.9700
C6—H60.9300C14—H14B0.9700
C7—C131.527 (4)C15—O81.217 (3)
C7—C141.541 (3)C15—O91.314 (3)
C7—C81.543 (3)N1—O21.185 (3)
C7—C121.544 (4)N1—O11.228 (4)
C8—C91.522 (4)N2—O51.205 (4)
C8—H8A0.9700N2—O41.227 (4)
C8—H8B0.9700N3—O71.225 (4)
C9—C101.506 (5)N3—O61.227 (4)
C9—H9A0.9700N4—H4A0.8900
C9—H9B0.9700N4—H4B0.8900
C10—C111.520 (5)N4—H4C0.8900
C10—H10A0.9700O9—H90.8200
C6—C1—C2124.9 (3)C10—C11—H11A109.4
C6—C1—N1116.3 (3)C12—C11—H11A109.4
C2—C1—N1118.8 (2)C10—C11—H11B109.4
O3—C2—C1124.2 (2)C12—C11—H11B109.4
O3—C2—C3124.8 (3)H11A—C11—H11B108.0
C1—C2—C3111.0 (2)C11—C12—C7113.7 (3)
C4—C3—C2124.2 (3)C11—C12—H12A108.8
C4—C3—N2117.0 (3)C7—C12—H12A108.8
C2—C3—N2118.7 (3)C11—C12—H12B108.8
C5—C4—C3119.3 (3)C7—C12—H12B108.8
C5—C4—H4120.4H12A—C12—H12B107.7
C3—C4—H4120.4N4—C13—C7115.4 (2)
C6—C5—C4121.1 (3)N4—C13—H13A108.4
C6—C5—N3118.5 (3)C7—C13—H13A108.4
C4—C5—N3120.3 (3)N4—C13—H13B108.4
C1—C6—C5119.4 (3)C7—C13—H13B108.4
C1—C6—H6120.3H13A—C13—H13B107.5
C5—C6—H6120.3C15—C14—C7119.4 (2)
C13—C7—C14112.4 (2)C15—C14—H14A107.5
C13—C7—C8109.4 (2)C7—C14—H14A107.5
C14—C7—C8107.9 (2)C15—C14—H14B107.5
C13—C7—C12106.5 (2)C7—C14—H14B107.5
C14—C7—C12111.9 (2)H14A—C14—H14B107.0
C8—C7—C12108.7 (2)O8—C15—O9122.6 (2)
C9—C8—C7114.1 (2)O8—C15—C14125.9 (2)
C9—C8—H8A108.7O9—C15—C14111.5 (2)
C7—C8—H8A108.7O2—N1—O1121.3 (3)
C9—C8—H8B108.7O2—N1—C1121.2 (2)
C7—C8—H8B108.7O1—N1—C1117.0 (3)
H8A—C8—H8B107.6O5—N2—O4121.8 (3)
C10—C9—C8111.9 (3)O5—N2—C3118.9 (3)
C10—C9—H9A109.2O4—N2—C3119.4 (3)
C8—C9—H9A109.2O7—N3—O6124.5 (3)
C10—C9—H9B109.2O7—N3—C5118.1 (3)
C8—C9—H9B109.2O6—N3—C5117.3 (4)
H9A—C9—H9B107.9C13—N4—H4A109.5
C9—C10—C11110.7 (3)C13—N4—H4B109.5
C9—C10—H10A109.5H4A—N4—H4B109.5
C11—C10—H10A109.5C13—N4—H4C109.5
C9—C10—H10B109.5H4A—N4—H4C109.5
C11—C10—H10B109.5H4B—N4—H4C109.5
H10A—C10—H10B108.1C15—O9—H9109.5
C10—C11—C12111.0 (3)
D—H···AD—HH···AD···AD—H···A
O9—H9···O8i0.821.862.672 (3)174
N4—H4C···O4ii0.892.322.957 (4)128
N4—H4C···O3ii0.892.062.862 (3)149
N4—H4B···O2iii0.892.412.894 (3)114
N4—H4B···O4i0.892.233.063 (3)155
N4—H4A···O3iii0.892.213.081 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O9—H9⋯O8i0.821.862.672 (3)174
N4—H4C⋯O4ii0.892.322.957 (4)128
N4—H4C⋯O3ii0.892.062.862 (3)149
N4—H4B⋯O2iii0.892.412.894 (3)114
N4—H4B⋯O4i0.892.233.063 (3)155
N4—H4A⋯O3iii0.892.213.081 (3)166

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Gabapentin and gabapentin monohydrate.

Authors:  J A Ibers
Journal:  Acta Crystallogr C       Date:  2001-05-15       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  3-substituted GABA analogs with central nervous system activity: a review.

Authors:  J S Bryans; D J Wustrow
Journal:  Med Res Rev       Date:  1999-03       Impact factor: 12.944

  3 in total

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