Literature DB >> 21582500

5,7-Dihydro-dibenzo[c,e]thiepine.

Nobuto Yoshinari1, Takumi Konno.   

Abstract

In the title compound, C(14)H(12)S, the central seven-membered C(6)S ring has a twist-boat conformation. The dihedral angle between the two benzene rings is 52.4 (1)°.

Entities:  

Year:  2009        PMID: 21582500      PMCID: PMC2968810          DOI: 10.1107/S1600536809008769

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of a pair of atrop diastereomeric RhIII complexes having a 2,2′-bis­(2-amino­ethyl­thio­meth­yl)-1,1′-biphenyl ligand, see: Yoshinari & Konno (2008 ▶). For the synthesis, see: Foubelo et al. (2005 ▶).

Experimental

Crystal data

C14H12S M = 212.30 Monoclinic, a = 5.645 (3) Å b = 17.316 (9) Å c = 11.398 (5) Å β = 92.444 (19)° V = 1113.1 (10) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 200 K 0.15 × 0.15 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (; Higashi, 1995 ▶) T min = 0.962, T max = 0.975 7548 measured reflections 2464 independent reflections 1324 reflections with I > 2σ(I) R int = 0.114

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.165 S = 1.06 2464 reflections 136 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.30 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809008769/is2397sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008769/is2397Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12SF(000) = 448
Mr = 212.30Dx = 1.267 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ynCell parameters from 4537 reflections
a = 5.645 (3) Åθ = 3.6–27.5°
b = 17.316 (9) ŵ = 0.25 mm1
c = 11.398 (5) ÅT = 200 K
β = 92.444 (19)°Prismatic, colourless
V = 1113.1 (10) Å30.15 × 0.15 × 0.10 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2464 independent reflections
Radiation source: fine-focus sealed tube1324 reflections with I > 2σ(I)
graphiteRint = 0.114
Detector resolution: 10.00 pixels mm-1θmax = 27.5°, θmin = 3.6°
ω scansh = −4→7
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −22→22
Tmin = 0.962, Tmax = 0.975l = −14→14
7548 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0655P)2] where P = (Fo2 + 2Fc2)/3
2464 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.30 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.27862 (17)0.41043 (5)−0.05701 (6)0.0391 (3)
C11.3831 (7)0.39078 (19)0.0932 (2)0.0357 (8)
H11.41030.33460.10230.043*
H21.53690.41720.10830.043*
C21.2131 (6)0.41676 (17)0.1826 (2)0.0281 (7)
C31.2565 (7)0.48526 (17)0.2447 (2)0.0330 (8)
H31.39260.51530.22940.040*
C41.1020 (7)0.50965 (19)0.3284 (2)0.0363 (9)
H41.12890.55720.36840.044*
C50.9098 (6)0.4648 (2)0.3532 (2)0.0363 (9)
H50.80610.48100.41200.044*
C60.8660 (6)0.39652 (19)0.2937 (2)0.0332 (8)
H60.73310.36590.31230.040*
C71.0160 (6)0.37196 (17)0.2059 (2)0.0276 (8)
C80.9612 (6)0.30059 (17)0.1387 (2)0.0293 (7)
C90.9182 (7)0.23099 (19)0.1957 (3)0.0369 (8)
H70.92360.22950.27900.044*
C100.8682 (7)0.1646 (2)0.1335 (3)0.0420 (9)
H80.84060.11760.17380.050*
C110.8582 (8)0.1662 (2)0.0120 (3)0.0483 (10)
H90.82420.1204−0.03130.058*
C120.8979 (7)0.23477 (19)−0.0461 (3)0.0395 (9)
H100.88920.2357−0.12950.047*
C130.9499 (6)0.30201 (17)0.0150 (2)0.0270 (7)
C140.9761 (6)0.37741 (18)−0.0492 (2)0.0320 (8)
H110.88330.4175−0.00950.038*
H120.90730.3716−0.13000.038*
U11U22U33U12U13U23
S10.0500 (6)0.0390 (5)0.0295 (4)−0.0065 (5)0.0140 (4)0.0003 (4)
C10.038 (2)0.0342 (19)0.0360 (16)−0.0057 (17)0.0081 (14)−0.0011 (14)
C20.041 (2)0.0229 (16)0.0206 (13)0.0035 (15)0.0040 (12)0.0033 (12)
C30.046 (2)0.0246 (17)0.0286 (15)−0.0038 (16)0.0003 (14)0.0045 (13)
C40.057 (3)0.0234 (17)0.0289 (16)0.0046 (17)0.0016 (15)−0.0023 (13)
C50.044 (2)0.041 (2)0.0239 (15)0.0118 (18)0.0062 (14)−0.0004 (14)
C60.039 (2)0.039 (2)0.0226 (14)−0.0031 (16)0.0078 (13)0.0036 (13)
C70.038 (2)0.0242 (17)0.0213 (14)0.0017 (15)0.0039 (13)0.0045 (12)
C80.033 (2)0.0237 (17)0.0312 (15)−0.0039 (15)0.0029 (13)0.0009 (12)
C90.045 (2)0.0331 (19)0.0326 (16)−0.0082 (17)−0.0004 (14)0.0038 (14)
C100.048 (3)0.0267 (19)0.051 (2)−0.0082 (18)−0.0012 (17)0.0045 (15)
C110.069 (3)0.027 (2)0.048 (2)−0.009 (2)−0.0008 (18)−0.0093 (15)
C120.056 (3)0.0317 (19)0.0310 (16)−0.0033 (18)0.0023 (15)−0.0054 (14)
C130.0226 (18)0.0290 (18)0.0296 (15)−0.0006 (15)0.0033 (12)0.0012 (12)
C140.043 (2)0.0316 (18)0.0216 (14)0.0011 (17)0.0045 (13)0.0035 (12)
S1—C141.807 (4)C7—C81.480 (4)
S1—C11.819 (3)C8—C91.395 (4)
C1—C21.499 (4)C8—C131.409 (4)
C1—H10.9900C9—C101.374 (5)
C1—H20.9900C9—H70.9500
C2—C71.391 (4)C10—C111.384 (4)
C2—C31.397 (4)C10—H80.9500
C3—C41.386 (5)C11—C121.382 (5)
C3—H30.9500C11—H90.9500
C4—C51.373 (5)C12—C131.382 (4)
C4—H40.9500C12—H100.9500
C5—C61.381 (4)C13—C141.507 (4)
C5—H50.9500C14—H110.9900
C6—C71.404 (4)C14—H120.9900
C6—H60.9500
C14—S1—C199.41 (15)C9—C8—C13118.6 (3)
C2—C1—S1113.1 (3)C9—C8—C7121.2 (2)
C2—C1—H1109.0C13—C8—C7120.2 (2)
S1—C1—H1109.0C10—C9—C8121.3 (3)
C2—C1—H2109.0C10—C9—H7119.3
S1—C1—H2109.0C8—C9—H7119.3
H1—C1—H2107.8C9—C10—C11119.8 (3)
C7—C2—C3120.1 (3)C9—C10—H8120.1
C7—C2—C1120.2 (3)C11—C10—H8120.1
C3—C2—C1119.7 (3)C12—C11—C10119.8 (3)
C4—C3—C2120.3 (3)C12—C11—H9120.1
C4—C3—H3119.8C10—C11—H9120.1
C2—C3—H3119.8C13—C12—C11121.2 (3)
C5—C4—C3119.7 (3)C13—C12—H10119.4
C5—C4—H4120.1C11—C12—H10119.4
C3—C4—H4120.1C12—C13—C8119.3 (3)
C4—C5—C6120.6 (3)C12—C13—C14120.6 (3)
C4—C5—H5119.7C8—C13—C14120.0 (3)
C6—C5—H5119.7C13—C14—S1114.2 (2)
C5—C6—C7120.6 (3)C13—C14—H11108.7
C5—C6—H6119.7S1—C14—H11108.7
C7—C6—H6119.7C13—C14—H12108.7
C2—C7—C6118.6 (3)S1—C14—H12108.7
C2—C7—C8121.2 (3)H11—C14—H12107.6
C6—C7—C8120.2 (3)
C14—S1—C1—C2−45.4 (3)C2—C7—C8—C13−51.6 (5)
S1—C1—C2—C779.6 (3)C6—C7—C8—C13127.2 (3)
S1—C1—C2—C3−102.0 (3)C13—C8—C9—C100.7 (5)
C7—C2—C3—C4−1.0 (5)C7—C8—C9—C10−179.7 (4)
C1—C2—C3—C4−179.4 (3)C8—C9—C10—C11−0.5 (5)
C2—C3—C4—C52.2 (5)C9—C10—C11—C12−0.2 (6)
C3—C4—C5—C6−1.5 (5)C10—C11—C12—C130.6 (6)
C4—C5—C6—C7−0.5 (5)C11—C12—C13—C8−0.4 (6)
C3—C2—C7—C6−1.0 (4)C11—C12—C13—C14−175.8 (4)
C1—C2—C7—C6177.4 (3)C9—C8—C13—C12−0.3 (5)
C3—C2—C7—C8177.8 (3)C7—C8—C13—C12−179.8 (3)
C1—C2—C7—C8−3.7 (4)C9—C8—C13—C14175.1 (3)
C5—C6—C7—C21.8 (4)C7—C8—C13—C14−4.4 (5)
C5—C6—C7—C8−177.1 (3)C12—C13—C14—S1−105.8 (3)
C2—C7—C8—C9128.8 (3)C8—C13—C14—S178.8 (3)
C6—C7—C8—C9−52.3 (5)C1—S1—C14—C13−43.6 (2)
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