Literature DB >> 21582487

1H-Benzimidazole-2(3H)-thione.

De-Cai Wang, Shan Mi, Wei Xu, Liang Jiang, Xin-Ming Huang.   

Abstract

The asymmetric unit of the title compound, C(7)H(6)N(2)S, contains one half-mol-ecule; the C and S atoms of the C=S group lie on a crystallographic mirror plane. In the crystal structure, inter-molecular n class="Chemical">N-H⋯S hydrogen bonds link the mol-ecules.

Entities:  

Year:  2009        PMID: 21582487      PMCID: PMC2968823          DOI: 10.1107/S1600536809008058

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Mavrova et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C7H6N2S M = 150.21 Monoclinic, a = 4.915 (1) Å b = 8.5590 (17) Å c = 8.2920 (17) Å β = 91.76 (3)° V = 348.66 (12) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 294 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.896, T max = 0.963 903 measured reflections 813 independent reflections 647 reflections with I > 2σ(I) R int = 0.044 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.152 S = 1.00 813 reflections 45 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATOn class="Chemical">N (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008058/hk2638sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008058/hk2638Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6N2SF(000) = 156
Mr = 150.21Dx = 1.431 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 25 reflections
a = 4.915 (1) Åθ = 10–14°
b = 8.5590 (17) ŵ = 0.38 mm1
c = 8.2920 (17) ÅT = 294 K
β = 91.76 (3)°Block, colorless
V = 348.66 (12) Å30.30 × 0.20 × 0.10 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer647 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 27.0°, θmin = 2.5°
ω/2θ scansh = 0→6
Absorption correction: ψ scan (North et al., 1968)k = 0→10
Tmin = 0.896, Tmax = 0.963l = −10→10
903 measured reflections3 standard reflections every 120 min
813 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1P)2 + 0.059P] where P = (Fo2 + 2Fc2)/3
813 reflections(Δ/σ)max < 0.001
45 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.06322 (19)0.25000.88609 (10)0.0510 (3)
N−0.2841 (4)0.1239 (2)1.1022 (2)0.0465 (5)
H0A−0.25050.02811.07830.056*
C1−0.7826 (5)0.1687 (4)1.4250 (3)0.0644 (7)
H1A−0.89140.11541.49640.077*
C2−0.6229 (5)0.0844 (3)1.3201 (3)0.0561 (7)
H2A−0.6243−0.02421.31950.067*
C3−0.4611 (4)0.1684 (3)1.2162 (3)0.0437 (5)
C4−0.1646 (7)0.25001.0292 (4)0.047
U11U22U33U12U13U23
S0.0671 (6)0.0270 (5)0.0588 (6)0.0000.0015 (4)0.000
N0.0585 (11)0.0227 (9)0.0578 (12)−0.0010 (8)−0.0061 (9)0.0009 (8)
C10.0621 (14)0.0558 (17)0.0755 (18)−0.0084 (13)0.0082 (13)0.0065 (14)
C20.0681 (15)0.0359 (13)0.0640 (16)−0.0047 (12)−0.0032 (13)0.0047 (11)
C30.0484 (11)0.0302 (12)0.0519 (13)0.0009 (9)−0.0094 (9)−0.0003 (9)
C40.0570.0290.0540.000−0.0190.000
S—C41.656 (4)C1—H1A0.9300
N—C31.359 (3)C2—C31.390 (3)
N—C41.378 (3)C2—H2A0.9300
N—H0A0.8600C3—C3i1.398 (4)
C1—C21.391 (4)C4—Ni1.378 (3)
C1—C1i1.391 (6)
C3—N—C4112.1 (2)C1—C2—H2A121.2
C3—N—H0A123.9N—C3—C2132.6 (2)
C4—N—H0A123.9N—C3—C3i106.27 (12)
C2—C1—C1i121.24 (16)C2—C3—C3i121.11 (15)
C2—C1—H1A119.4N—C4—Ni103.2 (3)
C1i—C1—H1A119.4N—C4—S128.40 (15)
C3—C2—C1117.6 (2)Ni—C4—S128.40 (15)
C3—C2—H2A121.2
C1i—C1—C2—C30.6 (3)C1—C2—C3—C3i−0.6 (3)
C4—N—C3—C2−179.1 (2)C3—N—C4—Ni−1.5 (3)
C4—N—C3—C3i1.0 (2)C3—N—C4—S179.5 (2)
C1—C2—C3—N179.5 (2)
D—H···AD—HH···AD···AD—H···A
N—H0A···Sii0.862.573.3798 (19)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H0A⋯Si0.862.573.3798 (19)158

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antitrichinellosis activity of some bis(benzimidazol-2-yl)amines.

Authors:  Anelia Ts Mavrova; Pavletta Denkova; Yordan A Tsenov; Kameliya K Anichina; Dimitar I Vutchev
Journal:  Bioorg Med Chem       Date:  2007-06-13       Impact factor: 3.641

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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