Literature DB >> 21582476

(1'S,2R,3R)-(-)-2-Hydr-oxy-3-morpholino-3-phenyl-N-(1'-phenyl-ethyl)propion-amide.

Angel Mendoza1, David M Aparicio, Joel L Terán, Dino Gnecco, Jorge R Juárez.   

Abstract

In the title compound, C(21)H(26)N(2)O(3), the morpholine ring has a chair conformation and the dihedral angle between the two phenyl rings is 59.0 (3)°. The crystal packing is stabilized by inter-molecular O-H⋯O hydrogen bonds, generating a ribbon structure along the a axis. An intra-molecular N-H⋯O contact is also present.

Entities:  

Year:  2009        PMID: 21582476      PMCID: PMC2968871          DOI: 10.1107/S1600536809008198

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Barbaro et al. (1992 ▶); Szymanski et al. (2006 ▶); Sheppard et al. (2004 ▶); Chen et al. (1996 ▶); Concellón et al. (2003a ▶,b ▶); Martín et al. (2004 ▶). For related structures, see: Romero et al. (2005a ▶,b ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H26N2O3 M = 354.44 Orthorhombic, a = 6.0010 (17) Å b = 15.659 (3) Å c = 20.746 (4) Å V = 1949.5 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.72 × 0.28 × 0.16 mm

Data collection

Bruker P4 diffractometer Absorption correction: none 3964 measured reflections 2959 independent reflections 1116 reflections with I > 2σ(I) R int = 0.055 3 standard reflections every 97 reflections intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.163 S = 0.89 2959 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.19 e Å−3 Data collection: XSCANS (Siemens, 1994 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809008198/is2398sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008198/is2398Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H26N2O3Dx = 1.208 Mg m3
Mr = 354.44Melting point: 431 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 30 reflections
a = 6.0010 (17) Åθ = 3.9–23.9°
b = 15.659 (3) ŵ = 0.08 mm1
c = 20.746 (4) ÅT = 293 K
V = 1949.5 (8) Å3Prism, colorless
Z = 40.72 × 0.28 × 0.16 mm
F(000) = 760
Bruker P4 diffractometerRint = 0.055
Radiation source: fine-focus sealed tubeθmax = 29.0°, θmin = 1.6°
graphiteh = −1→8
2θ/ω scansk = −1→21
3964 measured reflectionsl = −1→28
2959 independent reflections3 standard reflections every 97 reflections
1116 reflections with I > 2σ(I) intensity decay: 3%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.163w = 1/[σ2(Fo2) + (0.0711P)2] where P = (Fo2 + 2Fc2)/3
S = 0.89(Δ/σ)max < 0.001
2959 reflectionsΔρmax = 0.24 e Å3
251 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.008 (2)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O1−0.1563 (5)0.92034 (19)0.75127 (13)0.0567 (8)
N2−0.1559 (5)0.90373 (19)0.60796 (14)0.0464 (8)
O20.4127 (5)0.96834 (18)0.72379 (13)0.0598 (8)
N10.2201 (6)0.9177 (2)0.81024 (16)0.0516 (9)
C100.0914 (6)0.8018 (2)0.66365 (17)0.0447 (9)
C70.2354 (6)0.9439 (2)0.74924 (19)0.0445 (9)
O3−0.3564 (6)0.9556 (2)0.48787 (14)0.0770 (10)
C50.0430 (7)0.8947 (2)0.64872 (18)0.0449 (9)
C60.0197 (6)0.9474 (2)0.71116 (18)0.0434 (9)
C4−0.2007 (7)0.9933 (2)0.5920 (2)0.0554 (11)
H4A−0.06971.01830.57210.066*
H4B−0.23221.02480.63120.066*
C80.3993 (7)0.9216 (3)0.8565 (2)0.0552 (11)
C150.3024 (8)0.7691 (2)0.65361 (19)0.0535 (10)
H150.41450.80450.63800.064*
C160.5180 (7)0.8364 (3)0.86521 (19)0.0558 (11)
C11−0.0702 (7)0.7484 (3)0.6885 (2)0.0610 (11)
H11−0.21250.76950.69640.073*
C170.4526 (9)0.7626 (3)0.8349 (2)0.0703 (13)
H170.32920.76350.80780.084*
C3−0.3969 (8)1.0009 (3)0.5463 (2)0.0676 (13)
H3A−0.52940.97820.56690.081*
H3B−0.42351.06070.53670.081*
C1−0.1284 (8)0.8570 (3)0.54712 (19)0.0637 (12)
H1A−0.10970.79670.55640.076*
H1B0.00550.87680.52570.076*
C2−0.3229 (9)0.8683 (3)0.5030 (2)0.0765 (15)
H2A−0.29730.83650.46350.092*
H2B−0.45590.84570.52330.092*
C130.1855 (9)0.6310 (3)0.6898 (2)0.0699 (14)
H130.21580.57360.69730.084*
C140.3492 (8)0.6836 (3)0.6666 (2)0.0638 (12)
H140.49180.66230.65940.077*
C210.7048 (9)0.8339 (4)0.9047 (3)0.0896 (17)
H210.75330.88350.92500.107*
C90.3070 (9)0.9542 (4)0.9206 (2)0.0938 (18)
H9A0.23311.00780.91380.141*
H9B0.42710.96180.95060.141*
H9C0.20270.91350.93750.141*
C12−0.0219 (9)0.6627 (3)0.7018 (3)0.0742 (14)
H12−0.13160.62740.71890.089*
C180.5674 (12)0.6867 (3)0.8440 (3)0.0958 (18)
H180.52070.63700.82360.115*
C190.7512 (13)0.6857 (5)0.8837 (4)0.119 (2)
H190.82970.63510.88990.143*
C200.8184 (12)0.7586 (5)0.9141 (3)0.122 (2)
H200.94180.75740.94120.147*
H1O−0.307 (14)0.929 (5)0.735 (4)0.184*
H1N0.059 (12)0.906 (4)0.819 (3)0.147*
H50.180 (12)0.915 (4)0.627 (3)0.147*
H6−0.004 (11)1.009 (4)0.697 (3)0.147*
H80.535 (12)0.960 (4)0.839 (3)0.147*
U11U22U33U12U13U23
O10.0370 (14)0.0800 (19)0.0531 (15)0.0034 (16)0.0045 (14)0.0008 (15)
N20.0476 (19)0.0465 (17)0.0450 (16)0.0034 (17)−0.0023 (16)0.0024 (14)
O20.0429 (17)0.0697 (18)0.0668 (18)−0.0070 (15)0.0011 (15)0.0061 (15)
N10.0388 (18)0.065 (2)0.0507 (19)0.0006 (18)−0.0067 (17)−0.0002 (17)
C100.041 (2)0.045 (2)0.049 (2)0.003 (2)0.0017 (19)0.0029 (17)
C70.038 (2)0.044 (2)0.051 (2)0.0032 (18)−0.001 (2)−0.0001 (19)
O30.091 (3)0.086 (2)0.0543 (17)0.013 (2)−0.0085 (19)0.0103 (16)
C50.041 (2)0.046 (2)0.048 (2)0.0057 (19)0.0005 (19)0.0005 (17)
C60.034 (2)0.047 (2)0.049 (2)0.0020 (19)0.0026 (18)0.0012 (18)
C40.058 (3)0.050 (2)0.058 (2)0.007 (2)−0.009 (2)0.008 (2)
C80.047 (2)0.064 (3)0.055 (2)0.008 (2)−0.011 (2)−0.009 (2)
C150.050 (2)0.052 (2)0.058 (2)0.002 (2)0.005 (2)−0.001 (2)
C160.048 (3)0.067 (3)0.053 (2)0.005 (2)0.002 (2)0.003 (2)
C110.048 (3)0.050 (2)0.085 (3)0.002 (2)0.008 (3)0.009 (2)
C170.069 (3)0.068 (3)0.074 (3)0.007 (3)0.004 (3)0.008 (3)
C30.073 (3)0.072 (3)0.058 (2)0.016 (3)−0.003 (3)0.005 (2)
C10.080 (3)0.061 (2)0.051 (2)0.007 (3)−0.003 (3)−0.010 (2)
C20.083 (4)0.088 (3)0.058 (3)0.004 (3)−0.016 (3)−0.010 (3)
C130.072 (3)0.047 (2)0.090 (3)0.006 (3)−0.002 (3)0.008 (2)
C140.057 (3)0.051 (2)0.084 (3)0.016 (2)0.004 (3)−0.004 (2)
C210.075 (4)0.098 (4)0.096 (4)0.018 (4)−0.030 (3)0.003 (3)
C90.080 (3)0.134 (5)0.068 (3)0.034 (4)−0.018 (3)−0.042 (3)
C120.063 (3)0.052 (3)0.107 (4)−0.003 (2)0.003 (3)0.018 (3)
C180.108 (5)0.063 (3)0.116 (4)0.014 (4)0.016 (4)0.011 (3)
C190.114 (6)0.094 (5)0.149 (6)0.045 (5)−0.001 (5)0.025 (5)
C200.104 (5)0.125 (5)0.137 (6)0.035 (5)−0.042 (5)0.025 (5)
O1—C61.410 (5)C16—C211.389 (6)
O1—H1O0.98 (8)C11—C121.401 (6)
N2—C41.466 (5)C11—H110.9300
N2—C11.468 (5)C17—C181.387 (7)
N2—C51.470 (5)C17—H170.9300
O2—C71.248 (4)C3—H3A0.9700
N1—C71.333 (5)C3—H3B0.9700
N1—C81.443 (5)C1—C21.494 (7)
N1—H1N1.00 (7)C1—H1A0.9700
C10—C111.380 (5)C1—H1B0.9700
C10—C151.382 (6)C2—H2A0.9700
C10—C51.514 (5)C2—H2B0.9700
C7—C61.517 (5)C13—C121.363 (7)
O3—C21.416 (5)C13—C141.370 (6)
O3—C31.426 (5)C13—H130.9300
C5—C61.542 (5)C14—H140.9300
C5—H50.99 (7)C21—C201.376 (8)
C6—H61.02 (6)C21—H210.9300
C4—C31.516 (6)C9—H9A0.9600
C4—H4A0.9700C9—H9B0.9600
C4—H4B0.9700C9—H9C0.9600
C8—C161.523 (6)C12—H120.9300
C8—C91.528 (6)C18—C191.376 (9)
C8—H81.08 (7)C18—H180.9300
C15—C141.393 (5)C19—C201.365 (9)
C15—H150.9300C19—H190.9300
C16—C171.373 (6)C20—H200.9300
C6—O1—H1O116 (4)C16—C17—H17119.5
C4—N2—C1107.6 (3)C18—C17—H17119.5
C4—N2—C5111.8 (3)O3—C3—C4111.1 (4)
C1—N2—C5110.8 (3)O3—C3—H3A109.4
C7—N1—C8124.5 (4)C4—C3—H3A109.4
C7—N1—H1N107 (4)O3—C3—H3B109.4
C8—N1—H1N127 (4)C4—C3—H3B109.4
C11—C10—C15118.4 (4)H3A—C3—H3B108.0
C11—C10—C5121.5 (4)N2—C1—C2112.3 (4)
C15—C10—C5120.1 (4)N2—C1—H1A109.1
O2—C7—N1123.7 (4)C2—C1—H1A109.1
O2—C7—C6119.7 (3)N2—C1—H1B109.1
N1—C7—C6116.5 (3)C2—C1—H1B109.1
C2—O3—C3108.5 (3)H1A—C1—H1B107.9
N2—C5—C10111.5 (3)O3—C2—C1111.2 (4)
N2—C5—C6111.0 (3)O3—C2—H2A109.4
C10—C5—C6111.1 (3)C1—C2—H2A109.4
N2—C5—H5112 (4)O3—C2—H2B109.4
C10—C5—H5104 (4)C1—C2—H2B109.4
C6—C5—H5107 (4)H2A—C2—H2B108.0
O1—C6—C7108.7 (3)C12—C13—C14120.0 (4)
O1—C6—C5113.8 (3)C12—C13—H13120.0
C7—C6—C5109.9 (3)C14—C13—H13120.0
O1—C6—H6110 (4)C13—C14—C15120.1 (4)
C7—C6—H6108 (4)C13—C14—H14120.0
C5—C6—H6106 (4)C15—C14—H14120.0
N2—C4—C3111.0 (3)C20—C21—C16120.5 (6)
N2—C4—H4A109.4C20—C21—H21119.8
C3—C4—H4A109.4C16—C21—H21119.8
N2—C4—H4B109.4C8—C9—H9A109.5
C3—C4—H4B109.4C8—C9—H9B109.5
H4A—C4—H4B108.0H9A—C9—H9B109.5
N1—C8—C16113.0 (3)C8—C9—H9C109.5
N1—C8—C9108.8 (3)H9A—C9—H9C109.5
C16—C8—C9111.1 (4)H9B—C9—H9C109.5
N1—C8—H8112 (3)C13—C12—C11120.1 (5)
C16—C8—H8100 (3)C13—C12—H12119.9
C9—C8—H8112 (3)C11—C12—H12119.9
C10—C15—C14120.8 (4)C19—C18—C17119.4 (6)
C10—C15—H15119.6C19—C18—H18120.3
C14—C15—H15119.6C17—C18—H18120.3
C17—C16—C21118.5 (5)C20—C19—C18120.2 (6)
C17—C16—C8123.3 (4)C20—C19—H19119.9
C21—C16—C8118.1 (4)C18—C19—H19119.9
C10—C11—C12120.6 (4)C19—C20—C21120.4 (6)
C10—C11—H11119.7C19—C20—H20119.8
C12—C11—H11119.7C21—C20—H20119.8
C16—C17—C18121.1 (5)
C8—N1—C7—O26.1 (6)N1—C8—C16—C17−3.5 (6)
C8—N1—C7—C6−170.8 (3)C9—C8—C16—C17119.1 (5)
C4—N2—C5—C10−178.6 (3)N1—C8—C16—C21175.0 (4)
C1—N2—C5—C10−58.5 (4)C9—C8—C16—C21−62.5 (5)
C4—N2—C5—C657.0 (4)C15—C10—C11—C12−1.3 (6)
C1—N2—C5—C6177.1 (3)C5—C10—C11—C12179.9 (4)
C11—C10—C5—N2−51.9 (5)C21—C16—C17—C181.0 (7)
C15—C10—C5—N2129.3 (4)C8—C16—C17—C18179.5 (4)
C11—C10—C5—C672.4 (5)C2—O3—C3—C460.3 (5)
C15—C10—C5—C6−106.4 (4)N2—C4—C3—O3−59.3 (5)
O2—C7—C6—O1−177.3 (3)C4—N2—C1—C2−54.6 (5)
N1—C7—C6—O1−0.2 (4)C5—N2—C1—C2−177.1 (4)
O2—C7—C6—C557.6 (5)C3—O3—C2—C1−59.9 (5)
N1—C7—C6—C5−125.4 (3)N2—C1—C2—O359.0 (5)
N2—C5—C6—O163.3 (4)C12—C13—C14—C15−1.7 (7)
C10—C5—C6—O1−61.3 (4)C10—C15—C14—C13−0.3 (7)
N2—C5—C6—C7−174.5 (3)C17—C16—C21—C20−1.3 (8)
C10—C5—C6—C760.9 (4)C8—C16—C21—C20−179.8 (6)
C1—N2—C4—C354.3 (5)C14—C13—C12—C112.1 (8)
C5—N2—C4—C3176.2 (3)C10—C11—C12—C13−0.6 (7)
C7—N1—C8—C16−99.7 (5)C16—C17—C18—C19−0.6 (8)
C7—N1—C8—C9136.4 (4)C17—C18—C19—C200.4 (10)
C11—C10—C15—C141.7 (6)C18—C19—C20—C21−0.7 (11)
C5—C10—C15—C14−179.4 (4)C16—C21—C20—C191.1 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O11.00 (7)1.92 (7)2.569 (5)120 (5)
O1—H1O···O2i0.98 (8)1.80 (8)2.753 (4)163 (7)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O11.00 (7)1.92 (7)2.569 (5)120 (5)
O1—H1O⋯O2i0.98 (8)1.80 (8)2.753 (4)163 (7)

Symmetry code: (i) .

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