| Literature DB >> 21582468 |
Mei-Yan Wei, Zhen Liu, Xiu-Li Zhang, Chang-Lun Shao, Chang-Yun Wang.
Abstract
The title compound, C(13)H(16)O(4), was isolated from culture extracts of the endophytic fungus Cephalosporium sp. The ester and ether substituents are twisted only slightly out of the benzene ring plane, making dihedral angles of 2.16 (2) and 3.63 (5)°, respectively. The non-H atoms of all three substituents are almost coplanar with the benzene ring, with an r.m.s. deviation of 0.0284 Å from the mean plane through all non-H atoms in the structure. A weak intra-molecular O-H⋯O hydrogen bond contributes to this conformation. In the crystal structure, mol-ecules are linked into a one-dimensional chain by inter-molecular O-H⋯O hydrogen bonds. Weak non-classical C-H⋯π contacts are also observed in the structure.Entities:
Year: 2009 PMID: 21582468 PMCID: PMC2968826 DOI: 10.1107/S160053680900806X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4817 reflections | |
| θ = 1.9–26.0° | |
| µ = 0.09 mm−1 | |
| α = 100.655 (3)° | |
| β = 98.771 (3)° | Block, colorless |
| γ = 115.456 (3)° | 0.40 × 0.38 × 0.35 mm |
| Bruker APEXII CCD diffractometer | 2420 independent reflections |
| Radiation source: fine-focus sealed tube | 2058 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 4817 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2420 reflections | (Δ/σ)max < 0.001 |
| 158 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | −0.4408 (3) | 0.2951 (3) | 0.50642 (16) | 0.0716 (5) | |
| H1A | −0.3697 | 0.3458 | 0.5944 | 0.107* | |
| H1B | −0.4681 | 0.1692 | 0.4784 | 0.107* | |
| H1C | −0.5616 | 0.3009 | 0.4960 | 0.107* | |
| C2 | −0.4029 (2) | 0.34671 (19) | 0.30738 (14) | 0.0490 (4) | |
| C3 | −0.2748 (2) | 0.46837 (17) | 0.24198 (13) | 0.0453 (3) | |
| C4 | −0.0924 (2) | 0.61796 (19) | 0.30835 (13) | 0.0481 (4) | |
| H4A | −0.0474 | 0.6410 | 0.3955 | 0.058* | |
| C5 | 0.02077 (19) | 0.73115 (19) | 0.24510 (13) | 0.0457 (3) | |
| C6 | −0.04479 (19) | 0.69490 (18) | 0.11391 (13) | 0.0452 (3) | |
| C7 | −0.2253 (2) | 0.5465 (2) | 0.04830 (14) | 0.0558 (4) | |
| H7A | −0.2702 | 0.5224 | −0.0389 | 0.067* | |
| C8 | −0.3388 (2) | 0.4343 (2) | 0.11268 (14) | 0.0544 (4) | |
| H8A | −0.4597 | 0.3346 | 0.0682 | 0.065* | |
| C9 | 0.0269 (2) | 0.7902 (2) | −0.07071 (14) | 0.0557 (4) | |
| H9A | −0.0895 | 0.8036 | −0.0942 | 0.067* | |
| H9B | 0.0003 | 0.6684 | −0.1169 | 0.067* | |
| C10 | 0.1952 (2) | 0.9336 (2) | −0.10072 (15) | 0.0578 (4) | |
| H10A | 0.3061 | 1.0114 | −0.0342 | 0.069* | |
| C11 | 0.1993 (2) | 0.9589 (2) | −0.21421 (14) | 0.0546 (4) | |
| C12 | 0.0315 (3) | 0.8410 (3) | −0.32730 (17) | 0.0836 (6) | |
| H12A | −0.0725 | 0.7516 | −0.3026 | 0.125* | |
| H12B | 0.0724 | 0.7793 | −0.3892 | 0.125* | |
| H12C | −0.0138 | 0.9160 | −0.3632 | 0.125* | |
| C13 | 0.3751 (3) | 1.1067 (3) | −0.2368 (2) | 0.0752 (5) | |
| H13A | 0.4748 | 1.1741 | −0.1582 | 0.113* | |
| H13B | 0.3387 | 1.1889 | −0.2699 | 0.113* | |
| H13C | 0.4242 | 1.0518 | −0.2968 | 0.113* | |
| O1 | −0.32509 (16) | 0.39913 (15) | 0.43211 (10) | 0.0640 (4) | |
| O2 | −0.56125 (16) | 0.21602 (16) | 0.25485 (12) | 0.0702 (4) | |
| O3 | 0.19557 (16) | 0.87793 (16) | 0.31218 (11) | 0.0663 (4) | |
| H3A | 0.231 (4) | 0.943 (4) | 0.263 (2) | 0.102 (8)* | |
| O4 | 0.08089 (14) | 0.81567 (13) | 0.06303 (9) | 0.0537 (3) |
| C1 | 0.0731 (11) | 0.0727 (11) | 0.0615 (10) | 0.0165 (9) | 0.0292 (9) | 0.0378 (9) |
| C2 | 0.0446 (7) | 0.0438 (7) | 0.0559 (8) | 0.0141 (6) | 0.0170 (6) | 0.0222 (6) |
| C3 | 0.0414 (7) | 0.0383 (7) | 0.0526 (8) | 0.0122 (6) | 0.0151 (6) | 0.0191 (6) |
| C4 | 0.0452 (7) | 0.0459 (7) | 0.0446 (7) | 0.0117 (6) | 0.0118 (6) | 0.0186 (6) |
| C5 | 0.0377 (7) | 0.0407 (7) | 0.0492 (7) | 0.0089 (5) | 0.0108 (5) | 0.0166 (6) |
| C6 | 0.0434 (7) | 0.0397 (7) | 0.0494 (8) | 0.0127 (6) | 0.0169 (6) | 0.0192 (6) |
| C7 | 0.0535 (8) | 0.0494 (8) | 0.0451 (7) | 0.0067 (7) | 0.0093 (6) | 0.0177 (6) |
| C8 | 0.0456 (7) | 0.0441 (7) | 0.0523 (8) | 0.0029 (6) | 0.0078 (6) | 0.0166 (6) |
| C9 | 0.0579 (9) | 0.0501 (8) | 0.0481 (8) | 0.0119 (7) | 0.0171 (6) | 0.0208 (6) |
| C10 | 0.0588 (9) | 0.0500 (8) | 0.0534 (8) | 0.0114 (7) | 0.0210 (7) | 0.0205 (7) |
| C11 | 0.0688 (10) | 0.0527 (8) | 0.0556 (8) | 0.0316 (8) | 0.0311 (7) | 0.0252 (7) |
| C12 | 0.0918 (14) | 0.0981 (15) | 0.0565 (10) | 0.0370 (12) | 0.0193 (10) | 0.0314 (10) |
| C13 | 0.0933 (14) | 0.0714 (11) | 0.0806 (12) | 0.0382 (11) | 0.0533 (11) | 0.0417 (10) |
| O1 | 0.0574 (6) | 0.0626 (7) | 0.0561 (6) | 0.0075 (5) | 0.0189 (5) | 0.0305 (5) |
| O2 | 0.0530 (7) | 0.0590 (7) | 0.0689 (7) | −0.0030 (5) | 0.0148 (5) | 0.0275 (6) |
| O3 | 0.0486 (6) | 0.0604 (7) | 0.0555 (7) | −0.0055 (5) | 0.0056 (5) | 0.0255 (5) |
| O4 | 0.0496 (6) | 0.0489 (6) | 0.0470 (6) | 0.0055 (5) | 0.0153 (4) | 0.0212 (5) |
| C1—O1 | 1.4418 (17) | C8—H8A | 0.9300 |
| C1—H1A | 0.9600 | C9—O4 | 1.4289 (18) |
| C1—H1B | 0.9600 | C9—C10 | 1.489 (2) |
| C1—H1C | 0.9600 | C9—H9A | 0.9700 |
| C2—O2 | 1.2066 (18) | C9—H9B | 0.9700 |
| C2—O1 | 1.3300 (18) | C10—C11 | 1.319 (2) |
| C2—C3 | 1.4808 (18) | C10—H10A | 0.9300 |
| C3—C8 | 1.378 (2) | C11—C12 | 1.484 (3) |
| C3—C4 | 1.399 (2) | C11—C13 | 1.500 (2) |
| C4—C5 | 1.3763 (18) | C12—H12A | 0.9600 |
| C4—H4A | 0.9300 | C12—H12B | 0.9600 |
| C5—O3 | 1.3594 (17) | C12—H12C | 0.9600 |
| C5—C6 | 1.397 (2) | C13—H13A | 0.9600 |
| C6—O4 | 1.3563 (16) | C13—H13B | 0.9600 |
| C6—C7 | 1.386 (2) | C13—H13C | 0.9600 |
| C7—C8 | 1.382 (2) | O3—H3A | 0.84 (3) |
| C7—H7A | 0.9300 | ||
| O1—C1—H1A | 109.5 | O4—C9—C10 | 106.75 (12) |
| O1—C1—H1B | 109.5 | O4—C9—H9A | 110.4 |
| H1A—C1—H1B | 109.5 | C10—C9—H9A | 110.4 |
| O1—C1—H1C | 109.5 | O4—C9—H9B | 110.4 |
| H1A—C1—H1C | 109.5 | C10—C9—H9B | 110.4 |
| H1B—C1—H1C | 109.5 | H9A—C9—H9B | 108.6 |
| O2—C2—O1 | 123.26 (13) | C11—C10—C9 | 125.11 (15) |
| O2—C2—C3 | 124.42 (14) | C11—C10—H10A | 117.4 |
| O1—C2—C3 | 112.31 (12) | C9—C10—H10A | 117.4 |
| C8—C3—C4 | 119.39 (13) | C10—C11—C12 | 121.92 (15) |
| C8—C3—C2 | 118.91 (13) | C10—C11—C13 | 121.91 (16) |
| C4—C3—C2 | 121.69 (13) | C12—C11—C13 | 116.16 (15) |
| C5—C4—C3 | 120.19 (13) | C11—C12—H12A | 109.5 |
| C5—C4—H4A | 119.9 | C11—C12—H12B | 109.5 |
| C3—C4—H4A | 119.9 | H12A—C12—H12B | 109.5 |
| O3—C5—C4 | 119.06 (13) | C11—C12—H12C | 109.5 |
| O3—C5—C6 | 120.93 (12) | H12A—C12—H12C | 109.5 |
| C4—C5—C6 | 120.01 (12) | H12B—C12—H12C | 109.5 |
| O4—C6—C7 | 126.11 (13) | C11—C13—H13A | 109.5 |
| O4—C6—C5 | 114.18 (12) | C11—C13—H13B | 109.5 |
| C7—C6—C5 | 119.71 (13) | H13A—C13—H13B | 109.5 |
| C8—C7—C6 | 119.92 (14) | C11—C13—H13C | 109.5 |
| C8—C7—H7A | 120.0 | H13A—C13—H13C | 109.5 |
| C6—C7—H7A | 120.0 | H13B—C13—H13C | 109.5 |
| C3—C8—C7 | 120.78 (13) | C2—O1—C1 | 117.18 (12) |
| C3—C8—H8A | 119.6 | C5—O3—H3A | 105.7 (18) |
| C7—C8—H8A | 119.6 | C6—O4—C9 | 118.40 (11) |
| O2—C2—C3—C8 | 0.9 (2) | C5—C6—C7—C8 | −0.6 (2) |
| O1—C2—C3—C8 | −178.13 (12) | C4—C3—C8—C7 | −0.3 (2) |
| O2—C2—C3—C4 | −179.95 (14) | C2—C3—C8—C7 | 178.79 (13) |
| O1—C2—C3—C4 | 1.0 (2) | C6—C7—C8—C3 | 0.2 (3) |
| C8—C3—C4—C5 | 0.8 (2) | O4—C9—C10—C11 | −177.76 (15) |
| C2—C3—C4—C5 | −178.28 (12) | C9—C10—C11—C12 | −0.9 (3) |
| C3—C4—C5—O3 | 178.57 (13) | C9—C10—C11—C13 | −179.89 (15) |
| C3—C4—C5—C6 | −1.2 (2) | O2—C2—O1—C1 | −1.6 (2) |
| O3—C5—C6—O4 | 0.8 (2) | C3—C2—O1—C1 | 177.47 (13) |
| C4—C5—C6—O4 | −179.48 (12) | C7—C6—O4—C9 | −0.6 (2) |
| O3—C5—C6—C7 | −178.70 (14) | C5—C6—O4—C9 | 179.99 (12) |
| C4—C5—C6—C7 | 1.0 (2) | C10—C9—O4—C6 | −176.59 (12) |
| O4—C6—C7—C8 | −179.96 (13) |
| H··· | ||||
| O3—H3A···O4 | 0.84 (3) | 2.16 (2) | 2.6519 (15) | 117 (2) |
| O3—H3A···O2i | 0.84 (3) | 2.20 (3) | 2.9111 (16) | 143 (2) |
| C9—H9B···Cg1ii | 0.97 | 2.90 | 3.7483 (2) | 146 |
| C13—H13B···Cg1iii | 0.96 | 2.96 | 3.688 (3) | 134 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3 | 0.84 (3) | 2.16 (2) | 2.6519 (15) | 117 (2) |
| O3—H3 | 0.84 (3) | 2.20 (3) | 2.9111 (16) | 143 (2) |
| C9—H9 | 0.97 | 2.90 | 3.7483 (2) | 146 |
| C13—H13 | 0.96 | 2.96 | 3.688 (3) | 134 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C3–C8 ring.