Literature DB >> 21582468

Methyl 3-hydr-oxy-4-(3-methyl-but-2-en-yloxy)benzoate.

Mei-Yan Wei, Zhen Liu, Xiu-Li Zhang, Chang-Lun Shao, Chang-Yun Wang.   

Abstract

The title compound, C(13)H(16)O(4), was isolated from culture extracts of the endophytic fungus Cephalosporium sp. The ester and ether substituents are twisted only slightly out of the benzene ring plane, making dihedral angles of 2.16 (2) and 3.63 (5)°, respectively. The non-H atoms of all three substituents are almost coplanar with the benzene ring, with an r.m.s. deviation of 0.0284 Å from the mean plane through all non-H atoms in the structure. A weak intra-molecular O-H⋯O hydrogen bond contributes to this conformation. In the crystal structure, mol-ecules are linked into a one-dimensional chain by inter-molecular O-H⋯O hydrogen bonds. Weak non-classical C-H⋯π contacts are also observed in the structure.

Entities:  

Year:  2009        PMID: 21582468      PMCID: PMC2968826          DOI: 10.1107/S160053680900806X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures with C—H⋯O and C—H⋯π contacts, see: Nangia (2002 ▶); Umezawa et al. (1999 ▶). For new bioactive secondary metabolites from the endophytic strain B60, see: Shao et al. (2007 ▶, 2008 ▶). For an investigation of the endophytic fungus, see: Shao et al. (2008 ▶). For a related structure, see: Huang et al. (2005 ▶).

Experimental

Crystal data

C13H16O4 M = 236.26 Triclinic, a = 7.8401 (16) Å b = 8.3899 (17) Å c = 11.099 (2) Å α = 100.655 (3)° β = 98.771 (3)° γ = 115.456 (3)° V = 625.3 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 291 K 0.40 × 0.38 × 0.35 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.964, T max = 0.968 4817 measured reflections 2420 independent reflections 2058 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.161 S = 1.05 2420 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680900806X/sj2576sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900806X/sj2576Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16O4Z = 2
Mr = 236.26F(000) = 252
Triclinic, P1Dx = 1.255 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.8401 (16) ÅCell parameters from 4817 reflections
b = 8.3899 (17) Åθ = 1.9–26.0°
c = 11.099 (2) ŵ = 0.09 mm1
α = 100.655 (3)°T = 291 K
β = 98.771 (3)°Block, colorless
γ = 115.456 (3)°0.40 × 0.38 × 0.35 mm
V = 625.3 (2) Å3
Bruker APEXII CCD diffractometer2420 independent reflections
Radiation source: fine-focus sealed tube2058 reflections with I > 2σ(I)
graphiteRint = 0.014
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.964, Tmax = 0.968k = −10→10
4817 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.1024P)2 + 0.0667P] where P = (Fo2 + 2Fc2)/3
2420 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.4408 (3)0.2951 (3)0.50642 (16)0.0716 (5)
H1A−0.36970.34580.59440.107*
H1B−0.46810.16920.47840.107*
H1C−0.56160.30090.49600.107*
C2−0.4029 (2)0.34671 (19)0.30738 (14)0.0490 (4)
C3−0.2748 (2)0.46837 (17)0.24198 (13)0.0453 (3)
C4−0.0924 (2)0.61796 (19)0.30835 (13)0.0481 (4)
H4A−0.04740.64100.39550.058*
C50.02077 (19)0.73115 (19)0.24510 (13)0.0457 (3)
C6−0.04479 (19)0.69490 (18)0.11391 (13)0.0452 (3)
C7−0.2253 (2)0.5465 (2)0.04830 (14)0.0558 (4)
H7A−0.27020.5224−0.03890.067*
C8−0.3388 (2)0.4343 (2)0.11268 (14)0.0544 (4)
H8A−0.45970.33460.06820.065*
C90.0269 (2)0.7902 (2)−0.07071 (14)0.0557 (4)
H9A−0.08950.8036−0.09420.067*
H9B0.00030.6684−0.11690.067*
C100.1952 (2)0.9336 (2)−0.10072 (15)0.0578 (4)
H10A0.30611.0114−0.03420.069*
C110.1993 (2)0.9589 (2)−0.21421 (14)0.0546 (4)
C120.0315 (3)0.8410 (3)−0.32730 (17)0.0836 (6)
H12A−0.07250.7516−0.30260.125*
H12B0.07240.7793−0.38920.125*
H12C−0.01380.9160−0.36320.125*
C130.3751 (3)1.1067 (3)−0.2368 (2)0.0752 (5)
H13A0.47481.1741−0.15820.113*
H13B0.33871.1889−0.26990.113*
H13C0.42421.0518−0.29680.113*
O1−0.32509 (16)0.39913 (15)0.43211 (10)0.0640 (4)
O2−0.56125 (16)0.21602 (16)0.25485 (12)0.0702 (4)
O30.19557 (16)0.87793 (16)0.31218 (11)0.0663 (4)
H3A0.231 (4)0.943 (4)0.263 (2)0.102 (8)*
O40.08089 (14)0.81567 (13)0.06303 (9)0.0537 (3)
U11U22U33U12U13U23
C10.0731 (11)0.0727 (11)0.0615 (10)0.0165 (9)0.0292 (9)0.0378 (9)
C20.0446 (7)0.0438 (7)0.0559 (8)0.0141 (6)0.0170 (6)0.0222 (6)
C30.0414 (7)0.0383 (7)0.0526 (8)0.0122 (6)0.0151 (6)0.0191 (6)
C40.0452 (7)0.0459 (7)0.0446 (7)0.0117 (6)0.0118 (6)0.0186 (6)
C50.0377 (7)0.0407 (7)0.0492 (7)0.0089 (5)0.0108 (5)0.0166 (6)
C60.0434 (7)0.0397 (7)0.0494 (8)0.0127 (6)0.0169 (6)0.0192 (6)
C70.0535 (8)0.0494 (8)0.0451 (7)0.0067 (7)0.0093 (6)0.0177 (6)
C80.0456 (7)0.0441 (7)0.0523 (8)0.0029 (6)0.0078 (6)0.0166 (6)
C90.0579 (9)0.0501 (8)0.0481 (8)0.0119 (7)0.0171 (6)0.0208 (6)
C100.0588 (9)0.0500 (8)0.0534 (8)0.0114 (7)0.0210 (7)0.0205 (7)
C110.0688 (10)0.0527 (8)0.0556 (8)0.0316 (8)0.0311 (7)0.0252 (7)
C120.0918 (14)0.0981 (15)0.0565 (10)0.0370 (12)0.0193 (10)0.0314 (10)
C130.0933 (14)0.0714 (11)0.0806 (12)0.0382 (11)0.0533 (11)0.0417 (10)
O10.0574 (6)0.0626 (7)0.0561 (6)0.0075 (5)0.0189 (5)0.0305 (5)
O20.0530 (7)0.0590 (7)0.0689 (7)−0.0030 (5)0.0148 (5)0.0275 (6)
O30.0486 (6)0.0604 (7)0.0555 (7)−0.0055 (5)0.0056 (5)0.0255 (5)
O40.0496 (6)0.0489 (6)0.0470 (6)0.0055 (5)0.0153 (4)0.0212 (5)
C1—O11.4418 (17)C8—H8A0.9300
C1—H1A0.9600C9—O41.4289 (18)
C1—H1B0.9600C9—C101.489 (2)
C1—H1C0.9600C9—H9A0.9700
C2—O21.2066 (18)C9—H9B0.9700
C2—O11.3300 (18)C10—C111.319 (2)
C2—C31.4808 (18)C10—H10A0.9300
C3—C81.378 (2)C11—C121.484 (3)
C3—C41.399 (2)C11—C131.500 (2)
C4—C51.3763 (18)C12—H12A0.9600
C4—H4A0.9300C12—H12B0.9600
C5—O31.3594 (17)C12—H12C0.9600
C5—C61.397 (2)C13—H13A0.9600
C6—O41.3563 (16)C13—H13B0.9600
C6—C71.386 (2)C13—H13C0.9600
C7—C81.382 (2)O3—H3A0.84 (3)
C7—H7A0.9300
O1—C1—H1A109.5O4—C9—C10106.75 (12)
O1—C1—H1B109.5O4—C9—H9A110.4
H1A—C1—H1B109.5C10—C9—H9A110.4
O1—C1—H1C109.5O4—C9—H9B110.4
H1A—C1—H1C109.5C10—C9—H9B110.4
H1B—C1—H1C109.5H9A—C9—H9B108.6
O2—C2—O1123.26 (13)C11—C10—C9125.11 (15)
O2—C2—C3124.42 (14)C11—C10—H10A117.4
O1—C2—C3112.31 (12)C9—C10—H10A117.4
C8—C3—C4119.39 (13)C10—C11—C12121.92 (15)
C8—C3—C2118.91 (13)C10—C11—C13121.91 (16)
C4—C3—C2121.69 (13)C12—C11—C13116.16 (15)
C5—C4—C3120.19 (13)C11—C12—H12A109.5
C5—C4—H4A119.9C11—C12—H12B109.5
C3—C4—H4A119.9H12A—C12—H12B109.5
O3—C5—C4119.06 (13)C11—C12—H12C109.5
O3—C5—C6120.93 (12)H12A—C12—H12C109.5
C4—C5—C6120.01 (12)H12B—C12—H12C109.5
O4—C6—C7126.11 (13)C11—C13—H13A109.5
O4—C6—C5114.18 (12)C11—C13—H13B109.5
C7—C6—C5119.71 (13)H13A—C13—H13B109.5
C8—C7—C6119.92 (14)C11—C13—H13C109.5
C8—C7—H7A120.0H13A—C13—H13C109.5
C6—C7—H7A120.0H13B—C13—H13C109.5
C3—C8—C7120.78 (13)C2—O1—C1117.18 (12)
C3—C8—H8A119.6C5—O3—H3A105.7 (18)
C7—C8—H8A119.6C6—O4—C9118.40 (11)
O2—C2—C3—C80.9 (2)C5—C6—C7—C8−0.6 (2)
O1—C2—C3—C8−178.13 (12)C4—C3—C8—C7−0.3 (2)
O2—C2—C3—C4−179.95 (14)C2—C3—C8—C7178.79 (13)
O1—C2—C3—C41.0 (2)C6—C7—C8—C30.2 (3)
C8—C3—C4—C50.8 (2)O4—C9—C10—C11−177.76 (15)
C2—C3—C4—C5−178.28 (12)C9—C10—C11—C12−0.9 (3)
C3—C4—C5—O3178.57 (13)C9—C10—C11—C13−179.89 (15)
C3—C4—C5—C6−1.2 (2)O2—C2—O1—C1−1.6 (2)
O3—C5—C6—O40.8 (2)C3—C2—O1—C1177.47 (13)
C4—C5—C6—O4−179.48 (12)C7—C6—O4—C9−0.6 (2)
O3—C5—C6—C7−178.70 (14)C5—C6—O4—C9179.99 (12)
C4—C5—C6—C71.0 (2)C10—C9—O4—C6−176.59 (12)
O4—C6—C7—C8−179.96 (13)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O40.84 (3)2.16 (2)2.6519 (15)117 (2)
O3—H3A···O2i0.84 (3)2.20 (3)2.9111 (16)143 (2)
C9—H9B···Cg1ii0.972.903.7483 (2)146
C13—H13B···Cg1iii0.962.963.688 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O40.84 (3)2.16 (2)2.6519 (15)117 (2)
O3—H3A⋯O2i0.84 (3)2.20 (3)2.9111 (16)143 (2)
C9—H9BCg1ii0.972.903.7483 (2)146
C13—H13BCg1iii0.962.963.688 (3)134

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C3–C8 ring.

  3 in total

1.  CH/pi interaction in the conformation of peptides. A database study.

Authors:  Y Umezawa; S Tsuboyama; H Takahashi; J Uzawa; M Nishio
Journal:  Bioorg Med Chem       Date:  1999-09       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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