Literature DB >> 21582458

A second tricilinc polymorph of 6,6'-dieth-oxy-2,2'-[propane-1,2-diylbis(nitrilo-methyl-idyne)]diphenol.

Hoong-Kun Fun, Reza Kia, Hadi Kargar, Arezoo Jamshidvand.   

Abstract

The title Schiff base compound, C(21)H(26)N(2)O(4), is a second triclinic polymorph of a previously reported room-temperature structure [Jia (2009 ▶). Acta Cryst. E65, o646]. Strong intra-molecular O-H⋯N hydrogen bonds generate S(6) ring motifs. Inter-molecular C-H⋯O inter-actions link neighbouring mol-ecules into dimers with an R(2) (2)(16) ring motif. The mean planes of the two benzene rings are almost perpendicular to each other, making a dihedral angle of 88.24 (5)°. An inter-esting feature of the crystal structure is the intermolecular short C⋯O [3.1878 (13) Å] contact which is shorter than the sum of the van der Waals radii of the relevant atoms. The crystal structure is further stabilized by inter-molecular C-H⋯π and π-π inter-actions [centroid-centroid distance = 3.7414 (6) Å]. The structure has a stereogenic centre but the space group is centrosymmetric, so the mol-ecule exists as a racemate.

Entities:  

Year:  2009        PMID: 21582458      PMCID: PMC2968989          DOI: 10.1107/S1600536809008137

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For information on Schiff base ligands, complexes and their applications, see: Calligaris & Randaccio (1987 ▶). For the other polymorph, see: Jia, (2009 ▶). For related structures, see: Li et al. (2005 ▶); Bomfim et al. (2005 ▶); Glidewell et al. (2005, 2006 ▶); Sun et al. (2004 ▶); Fun et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶). For stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H26N2O4 M = 370.44 Triclinic, a = 8.9729 (2) Å b = 10.7008 (4) Å c = 11.3633 (2) Å α = 107.432 (1)° β = 108.487 (1)° γ = 95.979 (1)° V = 963.03 (5) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.56 × 0.27 × 0.25 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.952, T max = 0.978 19581 measured reflections 5527 independent reflections 4721 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.136 S = 1.05 5527 reflections 249 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809008137/at2736sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008137/at2736Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H26N2O4Z = 2
Mr = 370.44F(000) = 396
Triclinic, P1Dx = 1.277 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9729 (2) ÅCell parameters from 9912 reflections
b = 10.7008 (4) Åθ = 2.5–33.9°
c = 11.3633 (2) ŵ = 0.09 mm1
α = 107.432 (1)°T = 100 K
β = 108.487 (1)°Block, yellow
γ = 95.979 (1)°0.56 × 0.27 × 0.25 mm
V = 963.03 (5) Å3
Bruker SMART APEXII CCD area-detector diffractometer5527 independent reflections
Radiation source: fine-focus sealed tube4721 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 30.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.952, Tmax = 0.978k = −15→15
19581 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0795P)2 + 0.2658P] where P = (Fo2 + 2Fc2)/3
5527 reflections(Δ/σ)max = 0.001
249 parametersΔρmax = 0.53 e Å3
0 restraintsΔρmin = −0.23 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.45973 (9)0.68396 (7)1.04387 (8)0.02067 (16)
H10.39960.60740.99890.031*
O20.23678 (10)0.61221 (7)0.56112 (7)0.02165 (17)
H20.21990.56170.60180.032*
O30.60593 (9)0.93704 (7)1.19014 (7)0.02040 (16)
O40.30071 (10)0.74269 (7)0.41348 (7)0.02157 (17)
N10.20357 (10)0.51029 (9)0.87252 (9)0.01932 (18)
N20.22170 (11)0.39204 (9)0.61688 (9)0.01981 (18)
C10.37342 (12)0.77863 (10)1.03131 (9)0.01695 (19)
C20.45003 (12)0.91483 (10)1.10727 (10)0.01745 (19)
C30.36454 (13)1.01381 (10)1.09335 (10)0.0202 (2)
H3A0.41651.10551.14210.024*
C40.20267 (13)0.98033 (11)1.00838 (11)0.0230 (2)
H4A0.14561.04921.00030.028*
C50.12610 (12)0.84751 (11)0.93638 (11)0.0218 (2)
H5A0.01580.82490.88010.026*
C60.21104 (12)0.74568 (10)0.94623 (10)0.01782 (19)
C70.13033 (12)0.60568 (10)0.86605 (10)0.0193 (2)
H7A0.02110.58520.80790.023*
C80.11726 (12)0.37212 (10)0.78846 (10)0.0197 (2)
H8A0.00550.37120.73250.024*
C90.20882 (13)0.31383 (10)0.70025 (10)0.0209 (2)
H9A0.31820.31270.75640.025*
H9B0.15250.22000.64320.025*
C100.25539 (12)0.33633 (10)0.51501 (10)0.0195 (2)
H10A0.26240.24480.49360.023*
C110.28343 (12)0.40753 (10)0.43059 (10)0.01798 (19)
C120.32606 (13)0.34087 (11)0.32285 (10)0.0224 (2)
H12A0.33190.24920.30410.027*
C130.35938 (13)0.40746 (11)0.24449 (10)0.0236 (2)
H13A0.38810.36170.17210.028*
C140.35108 (12)0.54260 (11)0.27131 (10)0.0211 (2)
H14A0.37320.58800.21650.025*
C150.31054 (12)0.61053 (10)0.37785 (10)0.01799 (19)
C160.27562 (11)0.54322 (10)0.45865 (9)0.01716 (19)
C170.11095 (14)0.29050 (11)0.87711 (11)0.0251 (2)
H17A0.05830.33210.93760.038*
H17B0.22070.28840.92860.038*
H17C0.04970.19870.82200.038*
C180.68435 (13)1.07531 (10)1.27022 (10)0.0207 (2)
H18A0.62841.11291.33060.025*
H18B0.68181.12951.21290.025*
C190.85652 (13)1.07880 (11)1.34933 (11)0.0250 (2)
H19A0.91171.17141.40710.038*
H19B0.91191.04461.28870.038*
H19C0.85761.02261.40360.038*
C200.32265 (13)0.81235 (11)0.32824 (11)0.0228 (2)
H20A0.24820.76260.23570.027*
H20B0.43450.82130.33050.027*
C210.28754 (16)0.94927 (12)0.37877 (13)0.0284 (2)
H21A0.30391.00110.32420.043*
H21B0.36020.99650.47100.043*
H21C0.17570.93900.37390.043*
U11U22U33U12U13U23
O10.0213 (3)0.0161 (3)0.0204 (4)0.0042 (3)0.0039 (3)0.0045 (3)
O20.0338 (4)0.0181 (3)0.0173 (3)0.0072 (3)0.0154 (3)0.0053 (3)
O30.0215 (3)0.0164 (3)0.0181 (3)0.0023 (3)0.0042 (3)0.0027 (3)
O40.0309 (4)0.0184 (3)0.0173 (3)0.0041 (3)0.0113 (3)0.0066 (3)
N10.0206 (4)0.0199 (4)0.0153 (4)0.0007 (3)0.0065 (3)0.0044 (3)
N20.0234 (4)0.0187 (4)0.0165 (4)0.0036 (3)0.0070 (3)0.0059 (3)
C10.0202 (4)0.0180 (4)0.0139 (4)0.0042 (3)0.0082 (3)0.0053 (3)
C20.0204 (4)0.0183 (4)0.0145 (4)0.0037 (3)0.0085 (3)0.0049 (3)
C30.0257 (5)0.0191 (4)0.0187 (5)0.0064 (4)0.0124 (4)0.0055 (4)
C40.0251 (5)0.0247 (5)0.0240 (5)0.0110 (4)0.0132 (4)0.0090 (4)
C50.0199 (4)0.0271 (5)0.0209 (5)0.0080 (4)0.0096 (4)0.0087 (4)
C60.0191 (4)0.0202 (4)0.0153 (4)0.0039 (3)0.0084 (3)0.0057 (3)
C70.0190 (4)0.0231 (5)0.0150 (4)0.0018 (3)0.0070 (3)0.0058 (4)
C80.0195 (4)0.0194 (4)0.0169 (4)0.0010 (3)0.0047 (3)0.0050 (4)
C90.0264 (5)0.0188 (4)0.0178 (4)0.0055 (4)0.0078 (4)0.0070 (4)
C100.0226 (4)0.0166 (4)0.0164 (4)0.0043 (3)0.0055 (4)0.0038 (3)
C110.0194 (4)0.0181 (4)0.0140 (4)0.0041 (3)0.0052 (3)0.0033 (3)
C120.0276 (5)0.0212 (5)0.0169 (4)0.0079 (4)0.0088 (4)0.0033 (4)
C130.0272 (5)0.0277 (5)0.0155 (4)0.0083 (4)0.0103 (4)0.0037 (4)
C140.0218 (5)0.0262 (5)0.0152 (4)0.0041 (4)0.0075 (4)0.0066 (4)
C150.0184 (4)0.0188 (4)0.0146 (4)0.0026 (3)0.0052 (3)0.0043 (3)
C160.0185 (4)0.0185 (4)0.0125 (4)0.0036 (3)0.0059 (3)0.0029 (3)
C170.0282 (5)0.0245 (5)0.0222 (5)0.0000 (4)0.0093 (4)0.0096 (4)
C180.0247 (5)0.0160 (4)0.0181 (4)0.0019 (3)0.0081 (4)0.0021 (3)
C190.0253 (5)0.0213 (5)0.0222 (5)0.0020 (4)0.0049 (4)0.0042 (4)
C200.0276 (5)0.0240 (5)0.0205 (5)0.0041 (4)0.0116 (4)0.0105 (4)
C210.0377 (6)0.0249 (5)0.0295 (6)0.0082 (4)0.0168 (5)0.0140 (4)
O1—C11.3514 (12)C9—H9B0.9900
O1—H10.8400C10—C111.4542 (15)
O2—C161.3484 (11)C10—H10A0.9500
O2—H20.8400C11—C161.4046 (13)
O3—C21.3643 (12)C11—C121.4087 (14)
O3—C181.4432 (12)C12—C131.3765 (16)
O4—C151.3701 (12)C12—H12A0.9500
O4—C201.4338 (13)C13—C141.4008 (15)
N1—C71.2780 (14)C13—H13A0.9500
N1—C81.4644 (13)C14—C151.3905 (14)
N2—C101.2777 (13)C14—H14A0.9500
N2—C91.4614 (14)C15—C161.4112 (14)
C1—C61.4062 (13)C17—H17A0.9800
C1—C21.4153 (13)C17—H17B0.9800
C2—C31.3885 (14)C17—H17C0.9800
C3—C41.4018 (15)C18—C191.5110 (15)
C3—H3A0.9500C18—H18A0.9900
C4—C51.3802 (15)C18—H18B0.9900
C4—H4A0.9500C19—H19A0.9800
C5—C61.4046 (14)C19—H19B0.9800
C5—H5A0.9500C19—H19C0.9800
C6—C71.4617 (14)C20—C211.5107 (16)
C7—H7A0.9500C20—H20A0.9900
C8—C91.5242 (15)C20—H20B0.9900
C8—C171.5277 (15)C21—H21A0.9800
C8—H8A1.0000C21—H21B0.9800
C9—H9A0.9900C21—H21C0.9800
C1—O1—H1109.5C13—C12—C11120.54 (9)
C16—O2—H2109.5C13—C12—H12A119.7
C2—O3—C18116.03 (8)C11—C12—H12A119.7
C15—O4—C20116.95 (8)C12—C13—C14120.13 (9)
C7—N1—C8118.97 (9)C12—C13—H13A119.9
C10—N2—C9117.69 (9)C14—C13—H13A119.9
O1—C1—C6122.09 (9)C15—C14—C13120.23 (10)
O1—C1—C2118.39 (8)C15—C14—H14A119.9
C6—C1—C2119.52 (9)C13—C14—H14A119.9
O3—C2—C3125.27 (9)O4—C15—C14124.90 (9)
O3—C2—C1115.48 (9)O4—C15—C16114.95 (8)
C3—C2—C1119.25 (9)C14—C15—C16120.15 (9)
C2—C3—C4120.94 (9)O2—C16—C11122.22 (9)
C2—C3—H3A119.5O2—C16—C15118.56 (9)
C4—C3—H3A119.5C11—C16—C15119.22 (9)
C5—C4—C3120.10 (10)C8—C17—H17A109.5
C5—C4—H4A119.9C8—C17—H17B109.5
C3—C4—H4A119.9H17A—C17—H17B109.5
C4—C5—C6120.06 (10)C8—C17—H17C109.5
C4—C5—H5A120.0H17A—C17—H17C109.5
C6—C5—H5A120.0H17B—C17—H17C109.5
C5—C6—C1120.10 (9)O3—C18—C19107.74 (8)
C5—C6—C7119.59 (9)O3—C18—H18A110.2
C1—C6—C7120.30 (9)C19—C18—H18A110.2
N1—C7—C6121.39 (9)O3—C18—H18B110.2
N1—C7—H7A119.3C19—C18—H18B110.2
C6—C7—H7A119.3H18A—C18—H18B108.5
N1—C8—C9108.28 (8)C18—C19—H19A109.5
N1—C8—C17108.78 (8)C18—C19—H19B109.5
C9—C8—C17109.96 (9)H19A—C19—H19B109.5
N1—C8—H8A109.9C18—C19—H19C109.5
C9—C8—H8A109.9H19A—C19—H19C109.5
C17—C8—H8A109.9H19B—C19—H19C109.5
N2—C9—C8111.50 (8)O4—C20—C21106.98 (9)
N2—C9—H9A109.3O4—C20—H20A110.3
C8—C9—H9A109.3C21—C20—H20A110.3
N2—C9—H9B109.3O4—C20—H20B110.3
C8—C9—H9B109.3C21—C20—H20B110.3
H9A—C9—H9B108.0H20A—C20—H20B108.6
N2—C10—C11122.60 (9)C20—C21—H21A109.5
N2—C10—H10A118.7C20—C21—H21B109.5
C11—C10—H10A118.7H21A—C21—H21B109.5
C16—C11—C12119.72 (10)C20—C21—H21C109.5
C16—C11—C10120.87 (9)H21A—C21—H21C109.5
C12—C11—C10119.35 (9)H21B—C21—H21C109.5
C18—O3—C2—C31.11 (15)C17—C8—C9—N2−178.20 (8)
C18—O3—C2—C1−178.73 (8)C9—N2—C10—C11−175.17 (9)
O1—C1—C2—O3−1.69 (13)N2—C10—C11—C160.46 (15)
C6—C1—C2—O3177.98 (9)N2—C10—C11—C12177.59 (10)
O1—C1—C2—C3178.45 (9)C16—C11—C12—C13−0.30 (15)
C6—C1—C2—C3−1.88 (15)C10—C11—C12—C13−177.47 (9)
O3—C2—C3—C4−177.92 (10)C11—C12—C13—C14−0.02 (16)
C1—C2—C3—C41.92 (15)C12—C13—C14—C150.56 (16)
C2—C3—C4—C5−0.39 (17)C20—O4—C15—C144.75 (14)
C3—C4—C5—C6−1.17 (16)C20—O4—C15—C16−175.21 (8)
C4—C5—C6—C11.18 (16)C13—C14—C15—O4179.28 (9)
C4—C5—C6—C7−177.88 (9)C13—C14—C15—C16−0.76 (15)
O1—C1—C6—C5−179.99 (9)C12—C11—C16—O2−179.44 (9)
C2—C1—C6—C50.35 (15)C10—C11—C16—O2−2.33 (15)
O1—C1—C6—C7−0.94 (15)C12—C11—C16—C150.10 (14)
C2—C1—C6—C7179.41 (9)C10—C11—C16—C15177.22 (9)
C8—N1—C7—C6−179.15 (9)O4—C15—C16—O2−0.05 (13)
C5—C6—C7—N1−179.86 (10)C14—C15—C16—O2179.99 (9)
C1—C6—C7—N11.08 (15)O4—C15—C16—C11−179.61 (8)
C7—N1—C8—C9121.02 (10)C14—C15—C16—C110.43 (14)
C7—N1—C8—C17−119.50 (10)C2—O3—C18—C19−177.40 (9)
C10—N2—C9—C8−161.52 (9)C15—O4—C20—C21173.58 (9)
N1—C8—C9—N2−59.47 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.841.832.5752 (13)146
O2—H2···N20.841.882.6178 (13)147
C9—H9A···O1i0.992.493.4293 (14)159
C18—H18b···Cg1ii0.99002.98003.8340 (12)142.00
C7—H7A···Cg2iii0.962.723.5554 (12)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.841.832.5752 (13)146
O2—H2⋯N20.841.882.6178 (13)147
C9—H9A⋯O1i0.992.493.4293 (14)159
C18—H18b⋯Cg1ii0.992.983.8340 (12)142
C7—H7ACg2iii0.962.723.5554 (12)176

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 benzene rings, respectively.

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Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2005-12-10       Impact factor: 1.172

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Authors:  Joao A S Bomfim; James L Wardell; John N Low; Janet M S Skakle; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2004-12-18       Impact factor: 1.172

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Authors:  Zhen Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

6.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

2.  Di-μ3-acetato-bis-{μ-6,6'-dieth-oxy-2,2'-[propane-1,2-diylbis(nitrilo-methanylyl-idene)]diphenolato}dicadmiumdisodium ethanol 0.67-solvate.

Authors:  Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-28
  2 in total

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