| Literature DB >> 21582458 |
Hoong-Kun Fun, Reza Kia, Hadi Kargar, Arezoo Jamshidvand.
Abstract
The title Schiff base compound, C(21)H(26)N(2)O(4), is a second triclinic polymorph of a previously reported room-temperature structure [Jia (2009 ▶). Acta Cryst. E65, o646]. Strong intra-molecular O-H⋯N hydrogen bonds generate S(6) ring motifs. Inter-molecular C-H⋯O inter-actions link neighbouring mol-ecules into dimers with an R(2) (2)(16) ring motif. The mean planes of the two benzene rings are almost perpendicular to each other, making a dihedral angle of 88.24 (5)°. An inter-esting feature of the crystal structure is the intermolecular short C⋯O [3.1878 (13) Å] contact which is shorter than the sum of the van der Waals radii of the relevant atoms. The crystal structure is further stabilized by inter-molecular C-H⋯π and π-π inter-actions [centroid-centroid distance = 3.7414 (6) Å]. The structure has a stereogenic centre but the space group is centrosymmetric, so the mol-ecule exists as a racemate.Entities:
Year: 2009 PMID: 21582458 PMCID: PMC2968989 DOI: 10.1107/S1600536809008137
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H26N2O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9912 reflections | |
| θ = 2.5–33.9° | |
| µ = 0.09 mm−1 | |
| α = 107.432 (1)° | |
| β = 108.487 (1)° | Block, yellow |
| γ = 95.979 (1)° | 0.56 × 0.27 × 0.25 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 5527 independent reflections |
| Radiation source: fine-focus sealed tube | 4721 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 19581 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5527 reflections | (Δ/σ)max = 0.001 |
| 249 parameters | Δρmax = 0.53 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.45973 (9) | 0.68396 (7) | 1.04387 (8) | 0.02067 (16) | |
| H1 | 0.3996 | 0.6074 | 0.9989 | 0.031* | |
| O2 | 0.23678 (10) | 0.61221 (7) | 0.56112 (7) | 0.02165 (17) | |
| H2 | 0.2199 | 0.5617 | 0.6018 | 0.032* | |
| O3 | 0.60593 (9) | 0.93704 (7) | 1.19014 (7) | 0.02040 (16) | |
| O4 | 0.30071 (10) | 0.74269 (7) | 0.41348 (7) | 0.02157 (17) | |
| N1 | 0.20357 (10) | 0.51029 (9) | 0.87252 (9) | 0.01932 (18) | |
| N2 | 0.22170 (11) | 0.39204 (9) | 0.61688 (9) | 0.01981 (18) | |
| C1 | 0.37342 (12) | 0.77863 (10) | 1.03131 (9) | 0.01695 (19) | |
| C2 | 0.45003 (12) | 0.91483 (10) | 1.10727 (10) | 0.01745 (19) | |
| C3 | 0.36454 (13) | 1.01381 (10) | 1.09335 (10) | 0.0202 (2) | |
| H3A | 0.4165 | 1.1055 | 1.1421 | 0.024* | |
| C4 | 0.20267 (13) | 0.98033 (11) | 1.00838 (11) | 0.0230 (2) | |
| H4A | 0.1456 | 1.0492 | 1.0003 | 0.028* | |
| C5 | 0.12610 (12) | 0.84751 (11) | 0.93638 (11) | 0.0218 (2) | |
| H5A | 0.0158 | 0.8249 | 0.8801 | 0.026* | |
| C6 | 0.21104 (12) | 0.74568 (10) | 0.94623 (10) | 0.01782 (19) | |
| C7 | 0.13033 (12) | 0.60568 (10) | 0.86605 (10) | 0.0193 (2) | |
| H7A | 0.0211 | 0.5852 | 0.8079 | 0.023* | |
| C8 | 0.11726 (12) | 0.37212 (10) | 0.78846 (10) | 0.0197 (2) | |
| H8A | 0.0055 | 0.3712 | 0.7325 | 0.024* | |
| C9 | 0.20882 (13) | 0.31383 (10) | 0.70025 (10) | 0.0209 (2) | |
| H9A | 0.3182 | 0.3127 | 0.7564 | 0.025* | |
| H9B | 0.1525 | 0.2200 | 0.6432 | 0.025* | |
| C10 | 0.25539 (12) | 0.33633 (10) | 0.51501 (10) | 0.0195 (2) | |
| H10A | 0.2624 | 0.2448 | 0.4936 | 0.023* | |
| C11 | 0.28343 (12) | 0.40753 (10) | 0.43059 (10) | 0.01798 (19) | |
| C12 | 0.32606 (13) | 0.34087 (11) | 0.32285 (10) | 0.0224 (2) | |
| H12A | 0.3319 | 0.2492 | 0.3041 | 0.027* | |
| C13 | 0.35938 (13) | 0.40746 (11) | 0.24449 (10) | 0.0236 (2) | |
| H13A | 0.3881 | 0.3617 | 0.1721 | 0.028* | |
| C14 | 0.35108 (12) | 0.54260 (11) | 0.27131 (10) | 0.0211 (2) | |
| H14A | 0.3732 | 0.5880 | 0.2165 | 0.025* | |
| C15 | 0.31054 (12) | 0.61053 (10) | 0.37785 (10) | 0.01799 (19) | |
| C16 | 0.27562 (11) | 0.54322 (10) | 0.45865 (9) | 0.01716 (19) | |
| C17 | 0.11095 (14) | 0.29050 (11) | 0.87711 (11) | 0.0251 (2) | |
| H17A | 0.0583 | 0.3321 | 0.9376 | 0.038* | |
| H17B | 0.2207 | 0.2884 | 0.9286 | 0.038* | |
| H17C | 0.0497 | 0.1987 | 0.8220 | 0.038* | |
| C18 | 0.68435 (13) | 1.07531 (10) | 1.27022 (10) | 0.0207 (2) | |
| H18A | 0.6284 | 1.1129 | 1.3306 | 0.025* | |
| H18B | 0.6818 | 1.1295 | 1.2129 | 0.025* | |
| C19 | 0.85652 (13) | 1.07880 (11) | 1.34933 (11) | 0.0250 (2) | |
| H19A | 0.9117 | 1.1714 | 1.4071 | 0.038* | |
| H19B | 0.9119 | 1.0446 | 1.2887 | 0.038* | |
| H19C | 0.8576 | 1.0226 | 1.4036 | 0.038* | |
| C20 | 0.32265 (13) | 0.81235 (11) | 0.32824 (11) | 0.0228 (2) | |
| H20A | 0.2482 | 0.7626 | 0.2357 | 0.027* | |
| H20B | 0.4345 | 0.8213 | 0.3305 | 0.027* | |
| C21 | 0.28754 (16) | 0.94927 (12) | 0.37877 (13) | 0.0284 (2) | |
| H21A | 0.3039 | 1.0011 | 0.3242 | 0.043* | |
| H21B | 0.3602 | 0.9965 | 0.4710 | 0.043* | |
| H21C | 0.1757 | 0.9390 | 0.3739 | 0.043* |
| O1 | 0.0213 (3) | 0.0161 (3) | 0.0204 (4) | 0.0042 (3) | 0.0039 (3) | 0.0045 (3) |
| O2 | 0.0338 (4) | 0.0181 (3) | 0.0173 (3) | 0.0072 (3) | 0.0154 (3) | 0.0053 (3) |
| O3 | 0.0215 (3) | 0.0164 (3) | 0.0181 (3) | 0.0023 (3) | 0.0042 (3) | 0.0027 (3) |
| O4 | 0.0309 (4) | 0.0184 (3) | 0.0173 (3) | 0.0041 (3) | 0.0113 (3) | 0.0066 (3) |
| N1 | 0.0206 (4) | 0.0199 (4) | 0.0153 (4) | 0.0007 (3) | 0.0065 (3) | 0.0044 (3) |
| N2 | 0.0234 (4) | 0.0187 (4) | 0.0165 (4) | 0.0036 (3) | 0.0070 (3) | 0.0059 (3) |
| C1 | 0.0202 (4) | 0.0180 (4) | 0.0139 (4) | 0.0042 (3) | 0.0082 (3) | 0.0053 (3) |
| C2 | 0.0204 (4) | 0.0183 (4) | 0.0145 (4) | 0.0037 (3) | 0.0085 (3) | 0.0049 (3) |
| C3 | 0.0257 (5) | 0.0191 (4) | 0.0187 (5) | 0.0064 (4) | 0.0124 (4) | 0.0055 (4) |
| C4 | 0.0251 (5) | 0.0247 (5) | 0.0240 (5) | 0.0110 (4) | 0.0132 (4) | 0.0090 (4) |
| C5 | 0.0199 (4) | 0.0271 (5) | 0.0209 (5) | 0.0080 (4) | 0.0096 (4) | 0.0087 (4) |
| C6 | 0.0191 (4) | 0.0202 (4) | 0.0153 (4) | 0.0039 (3) | 0.0084 (3) | 0.0057 (3) |
| C7 | 0.0190 (4) | 0.0231 (5) | 0.0150 (4) | 0.0018 (3) | 0.0070 (3) | 0.0058 (4) |
| C8 | 0.0195 (4) | 0.0194 (4) | 0.0169 (4) | 0.0010 (3) | 0.0047 (3) | 0.0050 (4) |
| C9 | 0.0264 (5) | 0.0188 (4) | 0.0178 (4) | 0.0055 (4) | 0.0078 (4) | 0.0070 (4) |
| C10 | 0.0226 (4) | 0.0166 (4) | 0.0164 (4) | 0.0043 (3) | 0.0055 (4) | 0.0038 (3) |
| C11 | 0.0194 (4) | 0.0181 (4) | 0.0140 (4) | 0.0041 (3) | 0.0052 (3) | 0.0033 (3) |
| C12 | 0.0276 (5) | 0.0212 (5) | 0.0169 (4) | 0.0079 (4) | 0.0088 (4) | 0.0033 (4) |
| C13 | 0.0272 (5) | 0.0277 (5) | 0.0155 (4) | 0.0083 (4) | 0.0103 (4) | 0.0037 (4) |
| C14 | 0.0218 (5) | 0.0262 (5) | 0.0152 (4) | 0.0041 (4) | 0.0075 (4) | 0.0066 (4) |
| C15 | 0.0184 (4) | 0.0188 (4) | 0.0146 (4) | 0.0026 (3) | 0.0052 (3) | 0.0043 (3) |
| C16 | 0.0185 (4) | 0.0185 (4) | 0.0125 (4) | 0.0036 (3) | 0.0059 (3) | 0.0029 (3) |
| C17 | 0.0282 (5) | 0.0245 (5) | 0.0222 (5) | 0.0000 (4) | 0.0093 (4) | 0.0096 (4) |
| C18 | 0.0247 (5) | 0.0160 (4) | 0.0181 (4) | 0.0019 (3) | 0.0081 (4) | 0.0021 (3) |
| C19 | 0.0253 (5) | 0.0213 (5) | 0.0222 (5) | 0.0020 (4) | 0.0049 (4) | 0.0042 (4) |
| C20 | 0.0276 (5) | 0.0240 (5) | 0.0205 (5) | 0.0041 (4) | 0.0116 (4) | 0.0105 (4) |
| C21 | 0.0377 (6) | 0.0249 (5) | 0.0295 (6) | 0.0082 (4) | 0.0168 (5) | 0.0140 (4) |
| O1—C1 | 1.3514 (12) | C9—H9B | 0.9900 |
| O1—H1 | 0.8400 | C10—C11 | 1.4542 (15) |
| O2—C16 | 1.3484 (11) | C10—H10A | 0.9500 |
| O2—H2 | 0.8400 | C11—C16 | 1.4046 (13) |
| O3—C2 | 1.3643 (12) | C11—C12 | 1.4087 (14) |
| O3—C18 | 1.4432 (12) | C12—C13 | 1.3765 (16) |
| O4—C15 | 1.3701 (12) | C12—H12A | 0.9500 |
| O4—C20 | 1.4338 (13) | C13—C14 | 1.4008 (15) |
| N1—C7 | 1.2780 (14) | C13—H13A | 0.9500 |
| N1—C8 | 1.4644 (13) | C14—C15 | 1.3905 (14) |
| N2—C10 | 1.2777 (13) | C14—H14A | 0.9500 |
| N2—C9 | 1.4614 (14) | C15—C16 | 1.4112 (14) |
| C1—C6 | 1.4062 (13) | C17—H17A | 0.9800 |
| C1—C2 | 1.4153 (13) | C17—H17B | 0.9800 |
| C2—C3 | 1.3885 (14) | C17—H17C | 0.9800 |
| C3—C4 | 1.4018 (15) | C18—C19 | 1.5110 (15) |
| C3—H3A | 0.9500 | C18—H18A | 0.9900 |
| C4—C5 | 1.3802 (15) | C18—H18B | 0.9900 |
| C4—H4A | 0.9500 | C19—H19A | 0.9800 |
| C5—C6 | 1.4046 (14) | C19—H19B | 0.9800 |
| C5—H5A | 0.9500 | C19—H19C | 0.9800 |
| C6—C7 | 1.4617 (14) | C20—C21 | 1.5107 (16) |
| C7—H7A | 0.9500 | C20—H20A | 0.9900 |
| C8—C9 | 1.5242 (15) | C20—H20B | 0.9900 |
| C8—C17 | 1.5277 (15) | C21—H21A | 0.9800 |
| C8—H8A | 1.0000 | C21—H21B | 0.9800 |
| C9—H9A | 0.9900 | C21—H21C | 0.9800 |
| C1—O1—H1 | 109.5 | C13—C12—C11 | 120.54 (9) |
| C16—O2—H2 | 109.5 | C13—C12—H12A | 119.7 |
| C2—O3—C18 | 116.03 (8) | C11—C12—H12A | 119.7 |
| C15—O4—C20 | 116.95 (8) | C12—C13—C14 | 120.13 (9) |
| C7—N1—C8 | 118.97 (9) | C12—C13—H13A | 119.9 |
| C10—N2—C9 | 117.69 (9) | C14—C13—H13A | 119.9 |
| O1—C1—C6 | 122.09 (9) | C15—C14—C13 | 120.23 (10) |
| O1—C1—C2 | 118.39 (8) | C15—C14—H14A | 119.9 |
| C6—C1—C2 | 119.52 (9) | C13—C14—H14A | 119.9 |
| O3—C2—C3 | 125.27 (9) | O4—C15—C14 | 124.90 (9) |
| O3—C2—C1 | 115.48 (9) | O4—C15—C16 | 114.95 (8) |
| C3—C2—C1 | 119.25 (9) | C14—C15—C16 | 120.15 (9) |
| C2—C3—C4 | 120.94 (9) | O2—C16—C11 | 122.22 (9) |
| C2—C3—H3A | 119.5 | O2—C16—C15 | 118.56 (9) |
| C4—C3—H3A | 119.5 | C11—C16—C15 | 119.22 (9) |
| C5—C4—C3 | 120.10 (10) | C8—C17—H17A | 109.5 |
| C5—C4—H4A | 119.9 | C8—C17—H17B | 109.5 |
| C3—C4—H4A | 119.9 | H17A—C17—H17B | 109.5 |
| C4—C5—C6 | 120.06 (10) | C8—C17—H17C | 109.5 |
| C4—C5—H5A | 120.0 | H17A—C17—H17C | 109.5 |
| C6—C5—H5A | 120.0 | H17B—C17—H17C | 109.5 |
| C5—C6—C1 | 120.10 (9) | O3—C18—C19 | 107.74 (8) |
| C5—C6—C7 | 119.59 (9) | O3—C18—H18A | 110.2 |
| C1—C6—C7 | 120.30 (9) | C19—C18—H18A | 110.2 |
| N1—C7—C6 | 121.39 (9) | O3—C18—H18B | 110.2 |
| N1—C7—H7A | 119.3 | C19—C18—H18B | 110.2 |
| C6—C7—H7A | 119.3 | H18A—C18—H18B | 108.5 |
| N1—C8—C9 | 108.28 (8) | C18—C19—H19A | 109.5 |
| N1—C8—C17 | 108.78 (8) | C18—C19—H19B | 109.5 |
| C9—C8—C17 | 109.96 (9) | H19A—C19—H19B | 109.5 |
| N1—C8—H8A | 109.9 | C18—C19—H19C | 109.5 |
| C9—C8—H8A | 109.9 | H19A—C19—H19C | 109.5 |
| C17—C8—H8A | 109.9 | H19B—C19—H19C | 109.5 |
| N2—C9—C8 | 111.50 (8) | O4—C20—C21 | 106.98 (9) |
| N2—C9—H9A | 109.3 | O4—C20—H20A | 110.3 |
| C8—C9—H9A | 109.3 | C21—C20—H20A | 110.3 |
| N2—C9—H9B | 109.3 | O4—C20—H20B | 110.3 |
| C8—C9—H9B | 109.3 | C21—C20—H20B | 110.3 |
| H9A—C9—H9B | 108.0 | H20A—C20—H20B | 108.6 |
| N2—C10—C11 | 122.60 (9) | C20—C21—H21A | 109.5 |
| N2—C10—H10A | 118.7 | C20—C21—H21B | 109.5 |
| C11—C10—H10A | 118.7 | H21A—C21—H21B | 109.5 |
| C16—C11—C12 | 119.72 (10) | C20—C21—H21C | 109.5 |
| C16—C11—C10 | 120.87 (9) | H21A—C21—H21C | 109.5 |
| C12—C11—C10 | 119.35 (9) | H21B—C21—H21C | 109.5 |
| C18—O3—C2—C3 | 1.11 (15) | C17—C8—C9—N2 | −178.20 (8) |
| C18—O3—C2—C1 | −178.73 (8) | C9—N2—C10—C11 | −175.17 (9) |
| O1—C1—C2—O3 | −1.69 (13) | N2—C10—C11—C16 | 0.46 (15) |
| C6—C1—C2—O3 | 177.98 (9) | N2—C10—C11—C12 | 177.59 (10) |
| O1—C1—C2—C3 | 178.45 (9) | C16—C11—C12—C13 | −0.30 (15) |
| C6—C1—C2—C3 | −1.88 (15) | C10—C11—C12—C13 | −177.47 (9) |
| O3—C2—C3—C4 | −177.92 (10) | C11—C12—C13—C14 | −0.02 (16) |
| C1—C2—C3—C4 | 1.92 (15) | C12—C13—C14—C15 | 0.56 (16) |
| C2—C3—C4—C5 | −0.39 (17) | C20—O4—C15—C14 | 4.75 (14) |
| C3—C4—C5—C6 | −1.17 (16) | C20—O4—C15—C16 | −175.21 (8) |
| C4—C5—C6—C1 | 1.18 (16) | C13—C14—C15—O4 | 179.28 (9) |
| C4—C5—C6—C7 | −177.88 (9) | C13—C14—C15—C16 | −0.76 (15) |
| O1—C1—C6—C5 | −179.99 (9) | C12—C11—C16—O2 | −179.44 (9) |
| C2—C1—C6—C5 | 0.35 (15) | C10—C11—C16—O2 | −2.33 (15) |
| O1—C1—C6—C7 | −0.94 (15) | C12—C11—C16—C15 | 0.10 (14) |
| C2—C1—C6—C7 | 179.41 (9) | C10—C11—C16—C15 | 177.22 (9) |
| C8—N1—C7—C6 | −179.15 (9) | O4—C15—C16—O2 | −0.05 (13) |
| C5—C6—C7—N1 | −179.86 (10) | C14—C15—C16—O2 | 179.99 (9) |
| C1—C6—C7—N1 | 1.08 (15) | O4—C15—C16—C11 | −179.61 (8) |
| C7—N1—C8—C9 | 121.02 (10) | C14—C15—C16—C11 | 0.43 (14) |
| C7—N1—C8—C17 | −119.50 (10) | C2—O3—C18—C19 | −177.40 (9) |
| C10—N2—C9—C8 | −161.52 (9) | C15—O4—C20—C21 | 173.58 (9) |
| N1—C8—C9—N2 | −59.47 (11) |
| H··· | ||||
| O1—H1···N1 | 0.84 | 1.83 | 2.5752 (13) | 146 |
| O2—H2···N2 | 0.84 | 1.88 | 2.6178 (13) | 147 |
| C9—H9A···O1i | 0.99 | 2.49 | 3.4293 (14) | 159 |
| C18—H18b···Cg1ii | 0.9900 | 2.9800 | 3.8340 (12) | 142.00 |
| C7—H7A···Cg2iii | 0.96 | 2.72 | 3.5554 (12) | 176 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N1 | 0.84 | 1.83 | 2.5752 (13) | 146 |
| O2—H2⋯N2 | 0.84 | 1.88 | 2.6178 (13) | 147 |
| C9—H9 | 0.99 | 2.49 | 3.4293 (14) | 159 |
| C18—H18b⋯ | 0.99 | 2.98 | 3.8340 (12) | 142 |
| C7—H7 | 0.96 | 2.72 | 3.5554 (12) | 176 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 benzene rings, respectively.