Literature DB >> 21582422

(E)-6-Chloro-N'-(3,5-dichloro-2-hydroxy-benzyl-idene)-nicotinohydrazide.

Chun-Yan Ren1.   

Abstract

The title Schiff base compound, C(13)H(8)Cl(3)N(3)O(2), was synthesized by the condensation reaction of 3,5-dichloro-salicyl-aldehyde with 6-chloro-nicotinic acid hydrazide in 95% ethanol. The mol-ecule is nearly planar, with a dihedral angle of 1.9 (2)° between the aromatic ring planes, and an intra-molecular O-H⋯N hydrogen bond is observed. In the crystal, the mol-ecules are connected by inter-molecular N-H⋯O hydrogen bonds into infinite chains propagating in [100].

Entities:  

Year:  2009        PMID: 21582422      PMCID: PMC2968879          DOI: 10.1107/S1600536809007272

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Kim et al. (2005 ▶); Fan et al. (2007 ▶). For background on the biological activities of Schiff bases, see: Ren et al. (2002 ▶); Takeuchi et al. (1998 ▶). For a related structure, see: Zhi (2008 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C13H8Cl3N3O2 M = 344.57 Monoclinic, a = 4.8920 (10) Å b = 18.014 (4) Å c = 16.112 (3) Å β = 97.90 (3)° V = 1406.4 (5) Å3 Z = 4 Mo Kα radiation μ = 0.66 mm−1 T = 298 K 0.27 × 0.23 × 0.23 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Siemens, 1996 ▶) T min = 0.842, T max = 0.864 7275 measured reflections 2478 independent reflections 1323 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.114 S = 1.01 2478 reflections 191 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.40 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007272/hb2920sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007272/hb2920Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8Cl3N3O2F(000) = 696
Mr = 344.57Dx = 1.627 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 669 reflections
a = 4.892 (1) Åθ = 2.6–18.8°
b = 18.014 (4) ŵ = 0.66 mm1
c = 16.112 (3) ÅT = 298 K
β = 97.90 (3)°Block, light yellow
V = 1406.4 (5) Å30.27 × 0.23 × 0.23 mm
Z = 4
Siemens SMART CCD diffractometer2478 independent reflections
Radiation source: fine-focus sealed tube1323 reflections with I > 2σ(I)
graphiteRint = 0.078
φ and ω scansθmax = 25.1°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Siemens, 1996)h = −5→5
Tmin = 0.842, Tmax = 0.864k = −15→21
7275 measured reflectionsl = −19→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0343P)2 + 0.2069P] where P = (Fo2 + 2Fc2)/3
2478 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.3842 (2)0.62724 (6)0.45177 (7)0.0534 (3)
Cl21.2166 (3)0.50424 (7)0.65897 (7)0.0651 (4)
Cl31.2331 (3)1.28010 (7)0.69130 (8)0.0698 (4)
N10.9665 (7)0.8466 (2)0.6071 (2)0.0471 (9)
N21.0608 (7)0.91708 (18)0.6266 (2)0.0474 (9)
H21.23180.92610.64370.057*
O10.6119 (6)0.76626 (15)0.51866 (18)0.0542 (8)
H10.68000.80460.53970.081*
O20.6214 (6)0.95721 (16)0.59872 (19)0.0619 (9)
C11.0059 (8)0.7165 (2)0.6081 (2)0.0408 (10)
C20.7633 (8)0.7076 (2)0.5502 (2)0.0399 (10)
C30.6750 (8)0.6374 (2)0.5262 (2)0.0411 (11)
C40.8115 (8)0.5751 (2)0.5595 (3)0.0455 (11)
H40.74790.52800.54280.055*
C51.0456 (9)0.5834 (2)0.6182 (3)0.0461 (11)
C61.1444 (9)0.6532 (2)0.6417 (3)0.0450 (11)
H61.30360.65810.68010.054*
C71.1106 (9)0.7906 (3)0.6314 (2)0.0452 (11)
H71.28170.79640.66390.054*
C80.8673 (9)0.9716 (2)0.6171 (3)0.0450 (11)
C90.9672 (8)1.0483 (2)0.6324 (3)0.0410 (10)
C100.8110 (9)1.1062 (2)0.5936 (3)0.0506 (12)
H100.65191.09620.55660.061*
C110.8935 (9)1.1786 (3)0.6102 (3)0.0543 (12)
H110.79491.21830.58420.065*
C121.1270 (9)1.1895 (2)0.6666 (3)0.0477 (12)
N31.2807 (7)1.1365 (2)0.7059 (2)0.0502 (10)
C131.1988 (9)1.0670 (2)0.6874 (3)0.0493 (11)
H131.30511.02850.71330.059*
U11U22U33U12U13U23
Cl10.0452 (7)0.0496 (7)0.0632 (8)−0.0075 (6)0.0002 (5)−0.0027 (6)
Cl20.0715 (9)0.0529 (8)0.0676 (8)0.0141 (7)−0.0015 (6)0.0027 (6)
Cl30.0842 (10)0.0520 (8)0.0722 (9)−0.0184 (7)0.0071 (7)−0.0060 (7)
N10.040 (2)0.040 (2)0.062 (3)−0.0058 (19)0.0091 (18)−0.0038 (19)
N20.036 (2)0.037 (2)0.067 (3)−0.0058 (19)−0.0010 (18)−0.0074 (19)
O10.0454 (19)0.045 (2)0.069 (2)−0.0041 (16)−0.0032 (15)−0.0010 (16)
O20.0317 (19)0.060 (2)0.092 (2)−0.0082 (16)0.0027 (16)−0.0115 (18)
C10.030 (2)0.045 (3)0.048 (3)−0.004 (2)0.010 (2)−0.005 (2)
C20.034 (3)0.035 (3)0.050 (3)−0.002 (2)0.005 (2)−0.001 (2)
C30.030 (2)0.049 (3)0.043 (3)−0.002 (2)0.0032 (19)0.000 (2)
C40.048 (3)0.038 (3)0.053 (3)−0.005 (2)0.016 (2)−0.003 (2)
C50.048 (3)0.047 (3)0.044 (3)0.006 (2)0.010 (2)0.002 (2)
C60.041 (3)0.049 (3)0.045 (3)0.005 (2)0.007 (2)−0.004 (2)
C70.035 (3)0.053 (3)0.048 (3)−0.007 (2)0.006 (2)−0.008 (2)
C80.040 (3)0.046 (3)0.049 (3)−0.008 (2)0.006 (2)−0.005 (2)
C90.033 (3)0.041 (3)0.049 (3)−0.005 (2)0.006 (2)−0.005 (2)
C100.041 (3)0.053 (3)0.055 (3)−0.008 (2)−0.001 (2)−0.001 (2)
C110.053 (3)0.048 (3)0.061 (3)−0.003 (2)0.003 (2)0.006 (2)
C120.052 (3)0.046 (3)0.047 (3)−0.015 (2)0.013 (2)−0.001 (2)
N30.043 (2)0.048 (3)0.057 (2)−0.004 (2)−0.0001 (18)−0.006 (2)
C130.043 (3)0.044 (3)0.061 (3)−0.002 (2)0.004 (2)−0.006 (2)
Cl1—C31.739 (4)C4—C51.389 (5)
Cl2—C51.736 (4)C4—H40.9300
Cl3—C121.742 (4)C5—C61.382 (5)
N1—C71.263 (5)C6—H60.9300
N1—N21.372 (4)C7—H70.9300
N2—C81.358 (5)C8—C91.474 (5)
N2—H20.8600C9—C131.380 (5)
O1—C21.349 (4)C9—C101.391 (5)
O1—H10.8200C10—C111.380 (6)
O2—C81.227 (5)C10—H100.9300
C1—C61.396 (5)C11—C121.373 (6)
C1—C21.414 (5)C11—H110.9300
C1—C71.460 (5)C12—N31.321 (5)
C2—C31.375 (5)N3—C131.337 (5)
C3—C41.376 (5)C13—H130.9300
C7—N1—N2120.9 (4)N1—C7—C1119.3 (4)
C8—N2—N1115.9 (4)N1—C7—H7120.3
C8—N2—H2122.1C1—C7—H7120.3
N1—N2—H2122.1O2—C8—N2121.3 (4)
C2—O1—H1109.5O2—C8—C9122.0 (4)
C6—C1—C2118.8 (4)N2—C8—C9116.7 (4)
C6—C1—C7120.8 (4)C13—C9—C10117.2 (4)
C2—C1—C7120.4 (4)C13—C9—C8124.0 (4)
O1—C2—C3118.6 (4)C10—C9—C8118.6 (4)
O1—C2—C1121.8 (4)C11—C10—C9119.6 (4)
C3—C2—C1119.5 (4)C11—C10—H10120.2
C2—C3—C4121.5 (4)C9—C10—H10120.2
C2—C3—Cl1119.1 (3)C12—C11—C10117.3 (4)
C4—C3—Cl1119.4 (3)C12—C11—H11121.4
C3—C4—C5119.3 (4)C10—C11—H11121.4
C3—C4—H4120.4N3—C12—C11125.5 (4)
C5—C4—H4120.4N3—C12—Cl3115.8 (3)
C6—C5—C4120.6 (4)C11—C12—Cl3118.7 (4)
C6—C5—Cl2120.8 (4)C12—N3—C13115.9 (4)
C4—C5—Cl2118.6 (3)N3—C13—C9124.5 (4)
C5—C6—C1120.3 (4)N3—C13—H13117.7
C5—C6—H6119.9C9—C13—H13117.7
C1—C6—H6119.9
D—H···AD—HH···AD···AD—H···A
N2—H2···O2i0.862.202.930 (4)142
O1—H1···N10.821.822.540 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O2i0.862.202.930 (4)142
O1—H1⋯N10.821.822.540 (4)147

Symmetry code: (i) .

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